Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04487 and MPMX19_04488 are separated by 14 nucleotides MPMX19_04488 and MPMX19_04489 are separated by 20 nucleotides MPMX19_04489 and MPMX19_04490 are separated by 187 nucleotides
MPMX19_04487: MPMX19_04487 - L-cystine transport system permease protein YecS, at 853,917 to 854,567
_04487
MPMX19_04488: MPMX19_04488 - putative glutamine ABC transporter permease protein GlnM, at 854,582 to 855,250
_04488
MPMX19_04489: MPMX19_04489 - D-threonine aldolase, at 855,271 to 856,557
_04489
MPMX19_04490: MPMX19_04490 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 856,745 to 857,542
_04490
Position (kb) 855
856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.282 kb on - strand, within MPMX19_04487 at 854.282 kb on - strand, within MPMX19_04487 at 854.282 kb on - strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.354 kb on - strand, within MPMX19_04487 at 854.354 kb on - strand, within MPMX19_04487 at 854.354 kb on - strand, within MPMX19_04487 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.700 kb on + strand, within MPMX19_04488 at 854.700 kb on + strand, within MPMX19_04488 at 854.700 kb on + strand, within MPMX19_04488 at 854.701 kb on - strand, within MPMX19_04488 at 854.701 kb on - strand, within MPMX19_04488 at 854.701 kb on - strand, within MPMX19_04488 at 854.701 kb on - strand, within MPMX19_04488 at 854.811 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.944 kb on - strand, within MPMX19_04488 at 854.944 kb on - strand, within MPMX19_04488 at 854.955 kb on + strand, within MPMX19_04488 at 854.955 kb on + strand, within MPMX19_04488 at 854.956 kb on - strand, within MPMX19_04488 at 855.075 kb on + strand, within MPMX19_04488 at 855.075 kb on + strand, within MPMX19_04488 at 855.075 kb on + strand, within MPMX19_04488 at 855.075 kb on + strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.217 kb on - strand at 855.290 kb on + strand at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 856.361 kb on + strand, within MPMX19_04489 at 856.362 kb on - strand, within MPMX19_04489 at 856.362 kb on - strand, within MPMX19_04489 at 856.362 kb on - strand, within MPMX19_04489 at 856.362 kb on - strand, within MPMX19_04489 at 856.621 kb on + strand at 856.710 kb on + strand at 856.710 kb on + strand at 856.710 kb on + strand at 856.710 kb on + strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.923 kb on - strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.436 kb on - strand, within MPMX19_04490 at 857.436 kb on - strand, within MPMX19_04490 at 857.436 kb on - strand, within MPMX19_04490 at 857.546 kb on + strand at 857.546 kb on + strand at 857.546 kb on + strand at 857.546 kb on + strand at 857.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 854,281 + MPMX19_04487 0.56 -0.7 854,281 + MPMX19_04487 0.56 -0.1 854,281 + MPMX19_04487 0.56 -1.7 854,281 + MPMX19_04487 0.56 -0.7 854,281 + MPMX19_04487 0.56 -1.7 854,281 + MPMX19_04487 0.56 -1.8 854,281 + MPMX19_04487 0.56 +0.3 854,281 + MPMX19_04487 0.56 -0.1 854,282 - MPMX19_04487 0.56 -1.0 854,282 - MPMX19_04487 0.56 -2.8 854,282 - MPMX19_04487 0.56 +1.9 854,353 + MPMX19_04487 0.67 -0.2 854,353 + MPMX19_04487 0.67 -1.4 854,353 + MPMX19_04487 0.67 -1.3 854,353 + MPMX19_04487 0.67 -0.3 854,353 + MPMX19_04487 0.67 -1.9 854,353 + MPMX19_04487 0.67 -0.6 854,354 - MPMX19_04487 0.67 +0.4 854,354 - MPMX19_04487 0.67 +0.1 854,354 - MPMX19_04487 0.67 -2.9 854,661 + MPMX19_04488 0.12 -0.2 854,661 + MPMX19_04488 0.12 -1.1 854,661 + MPMX19_04488 0.12 -1.2 854,661 + MPMX19_04488 0.12 -1.3 854,661 + MPMX19_04488 0.12 -0.3 854,661 + MPMX19_04488 0.12 -0.3 854,661 + MPMX19_04488 0.12 -0.4 854,661 + MPMX19_04488 0.12 -0.6 854,661 + MPMX19_04488 0.12 +0.5 854,662 - MPMX19_04488 0.12 +0.1 854,662 - MPMX19_04488 0.12 -0.7 854,662 - MPMX19_04488 0.12 -1.2 854,662 - MPMX19_04488 0.12 -1.4 854,662 - MPMX19_04488 0.12 +0.0 854,662 - MPMX19_04488 0.12 -0.6 854,662 - MPMX19_04488 0.12 -1.1 854,662 - MPMX19_04488 0.12 +0.2 854,662 - MPMX19_04488 0.12 +0.6 854,662 - MPMX19_04488 0.12 -1.0 854,662 - MPMX19_04488 0.12 -1.3 854,682 + MPMX19_04488 0.15 -0.2 854,682 + MPMX19_04488 0.15 -0.4 854,682 + MPMX19_04488 0.15 -1.6 854,682 + MPMX19_04488 0.15 +0.4 854,682 + MPMX19_04488 0.15 +1.9 854,682 + MPMX19_04488 0.15 -0.7 854,682 + MPMX19_04488 0.15 +0.5 854,682 + MPMX19_04488 0.15 -0.6 854,682 + MPMX19_04488 0.15 +0.5 854,682 + MPMX19_04488 0.15 +0.0 854,683 - MPMX19_04488 0.15 -0.6 854,683 - MPMX19_04488 0.15 +0.5 854,683 - MPMX19_04488 0.15 -1.8 854,683 - MPMX19_04488 0.15 -1.3 854,683 - MPMX19_04488 0.15 +0.2 854,683 - MPMX19_04488 0.15 +1.2 854,683 - MPMX19_04488 0.15 +0.0 854,683 - MPMX19_04488 0.15 -0.4 854,683 - MPMX19_04488 0.15 +0.1 854,683 - MPMX19_04488 0.15 +0.1 854,683 - MPMX19_04488 0.15 +0.2 854,683 - MPMX19_04488 0.15 -2.0 854,683 - MPMX19_04488 0.15 +1.1 854,700 + MPMX19_04488 0.18 -0.8 854,700 + MPMX19_04488 0.18 -0.9 854,700 + MPMX19_04488 0.18 -2.1 854,701 - MPMX19_04488 0.18 +0.2 854,701 - MPMX19_04488 0.18 -0.4 854,701 - MPMX19_04488 0.18 -0.1 854,701 - MPMX19_04488 0.18 -1.7 854,811 + MPMX19_04488 0.34 -1.6 854,943 + MPMX19_04488 0.54 -2.6 854,943 + MPMX19_04488 0.54 -0.4 854,943 + MPMX19_04488 0.54 -1.4 854,943 + MPMX19_04488 0.54 +0.9 854,943 + MPMX19_04488 0.54 +1.7 854,944 - MPMX19_04488 0.54 -1.0 854,944 - MPMX19_04488 0.54 -0.8 854,955 + MPMX19_04488 0.56 -1.1 854,955 + MPMX19_04488 0.56 -1.1 854,956 - MPMX19_04488 0.56 -1.4 855,075 + MPMX19_04488 0.74 +0.4 855,075 + MPMX19_04488 0.74 -0.6 855,075 + MPMX19_04488 0.74 -1.7 855,075 + MPMX19_04488 0.74 +0.3 855,076 - MPMX19_04488 0.74 -1.2 855,076 - MPMX19_04488 0.74 -0.6 855,076 - MPMX19_04488 0.74 -1.3 855,076 - MPMX19_04488 0.74 -0.6 855,076 - MPMX19_04488 0.74 -1.1 855,076 - MPMX19_04488 0.74 -0.3 855,217 - -1.2 855,290 + -0.1 855,683 + MPMX19_04489 0.32 +1.2 855,683 + MPMX19_04489 0.32 +0.1 855,683 + MPMX19_04489 0.32 -0.7 855,683 + MPMX19_04489 0.32 -0.1 855,683 + MPMX19_04489 0.32 +0.2 855,683 + MPMX19_04489 0.32 -0.2 855,683 + MPMX19_04489 0.32 -0.4 855,683 + MPMX19_04489 0.32 -0.8 855,683 + MPMX19_04489 0.32 +0.4 855,683 + MPMX19_04489 0.32 -1.3 855,683 + MPMX19_04489 0.32 -1.3 855,683 + MPMX19_04489 0.32 +0.1 855,684 - MPMX19_04489 0.32 -0.2 855,684 - MPMX19_04489 0.32 +0.2 855,684 - MPMX19_04489 0.32 -2.0 855,684 - MPMX19_04489 0.32 -0.3 855,684 - MPMX19_04489 0.32 +1.9 855,684 - MPMX19_04489 0.32 -2.8 855,684 - MPMX19_04489 0.32 -0.0 855,932 + MPMX19_04489 0.51 -0.6 855,932 + MPMX19_04489 0.51 +1.9 855,932 + MPMX19_04489 0.51 -0.7 855,932 + MPMX19_04489 0.51 -0.1 855,932 + MPMX19_04489 0.51 -0.7 855,932 + MPMX19_04489 0.51 +1.2 855,932 + MPMX19_04489 0.51 -1.2 855,932 + MPMX19_04489 0.51 -0.5 855,932 + MPMX19_04489 0.51 +1.0 855,932 + MPMX19_04489 0.51 +0.2 855,932 + MPMX19_04489 0.51 +0.1 855,932 + MPMX19_04489 0.51 -0.7 855,932 + MPMX19_04489 0.51 -0.4 855,932 + MPMX19_04489 0.51 -0.1 855,932 + MPMX19_04489 0.51 -0.6 855,932 + MPMX19_04489 0.51 -0.3 855,933 - MPMX19_04489 0.51 +0.8 855,933 - MPMX19_04489 0.51 +0.3 855,933 - MPMX19_04489 0.51 +0.2 855,933 - MPMX19_04489 0.51 -0.7 855,933 - MPMX19_04489 0.51 -1.6 855,933 - MPMX19_04489 0.51 +0.7 855,933 - MPMX19_04489 0.51 +0.6 855,933 - MPMX19_04489 0.51 -0.3 855,933 - MPMX19_04489 0.51 -0.3 855,933 - MPMX19_04489 0.51 -1.7 856,361 + MPMX19_04489 0.85 +0.2 856,362 - MPMX19_04489 0.85 +0.8 856,362 - MPMX19_04489 0.85 +0.3 856,362 - MPMX19_04489 0.85 +0.5 856,362 - MPMX19_04489 0.85 -0.5 856,621 + +0.2 856,710 + +0.1 856,710 + +1.0 856,710 + -1.9 856,710 + -0.6 856,711 - -0.4 856,711 - +0.4 856,711 - +0.7 856,711 - -0.5 856,711 - +1.7 856,796 + -1.8 856,796 + +0.5 856,796 + -0.8 856,796 + +2.6 856,796 + -1.0 856,797 - -1.0 856,797 - -1.3 856,797 - -0.0 856,797 - +0.3 856,797 - -0.9 856,797 - -1.4 856,797 - +1.1 856,797 - -1.1 856,923 - MPMX19_04490 0.22 -0.7 857,249 + MPMX19_04490 0.63 -0.1 857,249 + MPMX19_04490 0.63 -0.3 857,249 + MPMX19_04490 0.63 -0.7 857,249 + MPMX19_04490 0.63 -0.9 857,249 + MPMX19_04490 0.63 -0.6 857,249 + MPMX19_04490 0.63 +0.3 857,249 + MPMX19_04490 0.63 +0.3 857,249 + MPMX19_04490 0.63 -0.6 857,249 + MPMX19_04490 0.63 -0.8 857,250 - MPMX19_04490 0.63 -0.6 857,250 - MPMX19_04490 0.63 +0.1 857,250 - MPMX19_04490 0.63 +0.4 857,250 - MPMX19_04490 0.63 -0.2 857,250 - MPMX19_04490 0.63 -0.3 857,250 - MPMX19_04490 0.63 -1.2 857,250 - MPMX19_04490 0.63 -0.5 857,250 - MPMX19_04490 0.63 -1.1 857,250 - MPMX19_04490 0.63 -0.6 857,250 - MPMX19_04490 0.63 +0.4 857,250 - MPMX19_04490 0.63 -0.3 857,435 + MPMX19_04490 0.86 +0.1 857,435 + MPMX19_04490 0.86 -1.7 857,435 + MPMX19_04490 0.86 -0.1 857,435 + MPMX19_04490 0.86 +0.0 857,436 - MPMX19_04490 0.87 -0.7 857,436 - MPMX19_04490 0.87 -0.0 857,436 - MPMX19_04490 0.87 -0.2 857,546 + -1.1 857,546 + +0.4 857,546 + -1.0 857,546 + -0.1 857,547 - -0.1
Or see this region's nucleotide sequence