Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03852 and MPMX19_03853 are separated by 156 nucleotides MPMX19_03853 and MPMX19_03854 are separated by 300 nucleotides MPMX19_03854 and MPMX19_03855 are separated by 158 nucleotides
MPMX19_03852: MPMX19_03852 - 4-alpha-glucanotransferase, at 95,314 to 97,503
_03852
MPMX19_03853: MPMX19_03853 - tRNA-Gln, at 97,660 to 97,733
_03853
MPMX19_03854: MPMX19_03854 - hypothetical protein, at 98,034 to 99,077
_03854
MPMX19_03855: MPMX19_03855 - Nickel and cobalt resistance protein CnrA, at 99,236 to 102,328
_03855
Position (kb) 98
99
100 Strain fitness (log2 ratio) -2
-1
0
1
2 at 97.039 kb on + strand, within MPMX19_03852 at 97.243 kb on + strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.244 kb on - strand, within MPMX19_03852 at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.303 kb on + strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.304 kb on - strand at 97.797 kb on - strand at 97.797 kb on - strand at 97.849 kb on + strand at 97.850 kb on - strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.010 kb on + strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.011 kb on - strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.019 kb on + strand at 98.020 kb on - strand at 98.020 kb on - strand at 98.020 kb on - strand at 98.020 kb on - strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.035 kb on + strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.036 kb on - strand at 98.235 kb on + strand, within MPMX19_03854 at 98.235 kb on + strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.236 kb on - strand, within MPMX19_03854 at 98.440 kb on + strand, within MPMX19_03854 at 98.440 kb on + strand, within MPMX19_03854 at 98.440 kb on + strand, within MPMX19_03854 at 98.441 kb on - strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.458 kb on + strand, within MPMX19_03854 at 98.459 kb on - strand, within MPMX19_03854 at 98.459 kb on - strand, within MPMX19_03854 at 98.644 kb on + strand, within MPMX19_03854 at 98.893 kb on + strand, within MPMX19_03854 at 99.001 kb on + strand at 99.002 kb on - strand at 99.062 kb on + strand at 99.062 kb on + strand at 99.063 kb on - strand at 99.063 kb on - strand at 99.070 kb on + strand at 99.070 kb on + strand at 99.070 kb on + strand at 99.070 kb on + strand at 99.070 kb on + strand at 99.071 kb on - strand at 99.071 kb on - strand at 99.071 kb on - strand at 99.071 kb on - strand at 99.071 kb on - strand at 99.071 kb on - strand at 99.071 kb on - strand at 99.071 kb on - strand at 99.106 kb on + strand at 99.106 kb on + strand at 99.107 kb on - strand at 99.107 kb on - strand at 99.107 kb on - strand at 99.107 kb on - strand at 99.108 kb on + strand at 99.131 kb on + strand at 99.312 kb on + strand at 99.313 kb on - strand at 99.313 kb on - strand at 99.313 kb on - strand at 99.313 kb on - strand at 99.313 kb on - strand at 99.375 kb on + strand at 99.375 kb on + strand at 99.375 kb on + strand at 99.376 kb on - strand at 99.376 kb on - strand at 99.376 kb on - strand at 99.376 kb on - strand at 99.376 kb on - strand at 99.492 kb on + strand at 99.492 kb on + strand at 99.492 kb on + strand at 99.492 kb on + strand at 99.492 kb on + strand at 99.492 kb on + strand at 99.493 kb on - strand at 99.493 kb on - strand at 99.493 kb on - strand at 99.891 kb on + strand, within MPMX19_03855 at 99.891 kb on + strand, within MPMX19_03855 at 99.891 kb on + strand, within MPMX19_03855 at 99.891 kb on + strand, within MPMX19_03855 at 99.891 kb on + strand, within MPMX19_03855 at 99.892 kb on - strand, within MPMX19_03855 at 99.892 kb on - strand, within MPMX19_03855 at 99.892 kb on - strand, within MPMX19_03855
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 97,039 + MPMX19_03852 0.79 -2.1 97,243 + MPMX19_03852 0.88 -0.3 97,244 - MPMX19_03852 0.88 +0.4 97,244 - MPMX19_03852 0.88 +1.0 97,244 - MPMX19_03852 0.88 +0.9 97,244 - MPMX19_03852 0.88 +0.1 97,244 - MPMX19_03852 0.88 -1.1 97,244 - MPMX19_03852 0.88 +0.1 97,244 - MPMX19_03852 0.88 -0.6 97,244 - MPMX19_03852 0.88 +2.1 97,244 - MPMX19_03852 0.88 -0.7 97,303 + +0.3 97,303 + -1.8 97,303 + -1.6 97,303 + -1.1 97,303 + -0.8 97,303 + -0.1 97,303 + -1.1 97,303 + -0.4 97,303 + +0.3 97,303 + -0.4 97,303 + -0.6 97,303 + +0.7 97,303 + -1.0 97,303 + -0.4 97,303 + +0.0 97,304 - -0.2 97,304 - +0.9 97,304 - +0.6 97,304 - -0.9 97,304 - -0.5 97,304 - -0.1 97,304 - -1.8 97,304 - -1.4 97,304 - -0.8 97,304 - -0.1 97,304 - -0.7 97,304 - -1.1 97,304 - -0.5 97,304 - +0.5 97,304 - -1.0 97,304 - +0.1 97,797 - -1.0 97,797 - -1.1 97,849 + -0.7 97,850 - -0.4 98,010 + +0.3 98,010 + -2.6 98,010 + +0.0 98,010 + +0.2 98,010 + +0.2 98,010 + -0.1 98,010 + -1.3 98,010 + +0.1 98,011 - -0.6 98,011 - +0.3 98,011 - +0.5 98,011 - -0.1 98,011 - -0.3 98,011 - +1.2 98,011 - +0.7 98,011 - -0.1 98,019 + -0.1 98,019 + -1.1 98,019 + +0.2 98,019 + -0.4 98,019 + -0.3 98,019 + -1.0 98,019 + -0.5 98,020 - -0.7 98,020 - -1.2 98,020 - +1.1 98,020 - -0.3 98,035 + +2.2 98,035 + +1.2 98,035 + +0.2 98,035 + +0.6 98,035 + -2.0 98,035 + -1.6 98,035 + +0.6 98,035 + +1.1 98,035 + -0.8 98,035 + -0.1 98,036 - -0.9 98,036 - +0.1 98,036 - +0.2 98,036 - -0.9 98,036 - +0.1 98,036 - +0.3 98,036 - -1.4 98,036 - +0.9 98,036 - +1.1 98,235 + MPMX19_03854 0.19 -0.8 98,235 + MPMX19_03854 0.19 -0.8 98,236 - MPMX19_03854 0.19 -0.7 98,236 - MPMX19_03854 0.19 -1.0 98,236 - MPMX19_03854 0.19 +0.9 98,236 - MPMX19_03854 0.19 -0.9 98,236 - MPMX19_03854 0.19 -0.4 98,440 + MPMX19_03854 0.39 -0.4 98,440 + MPMX19_03854 0.39 -1.6 98,440 + MPMX19_03854 0.39 +0.6 98,441 - MPMX19_03854 0.39 -1.6 98,458 + MPMX19_03854 0.41 +0.6 98,458 + MPMX19_03854 0.41 -1.8 98,458 + MPMX19_03854 0.41 -0.4 98,458 + MPMX19_03854 0.41 -0.9 98,458 + MPMX19_03854 0.41 -0.4 98,459 - MPMX19_03854 0.41 -1.4 98,459 - MPMX19_03854 0.41 -0.4 98,644 + MPMX19_03854 0.58 +0.1 98,893 + MPMX19_03854 0.82 +1.4 99,001 + -0.5 99,002 - -0.2 99,062 + +1.9 99,062 + -1.8 99,063 - +0.3 99,063 - +0.4 99,070 + -1.7 99,070 + +1.0 99,070 + +1.2 99,070 + -0.6 99,070 + -1.3 99,071 - -0.4 99,071 - +0.9 99,071 - -1.1 99,071 - -0.6 99,071 - +0.3 99,071 - -0.7 99,071 - +0.8 99,071 - -2.0 99,106 + -0.0 99,106 + +1.9 99,107 - -1.7 99,107 - -0.1 99,107 - +0.3 99,107 - +0.7 99,108 + -1.8 99,131 + +1.6 99,312 + -0.7 99,313 - -1.0 99,313 - -0.7 99,313 - +0.9 99,313 - -1.1 99,313 - -2.3 99,375 + +0.3 99,375 + -1.4 99,375 + +1.3 99,376 - +0.5 99,376 - -1.7 99,376 - -0.8 99,376 - -0.2 99,376 - -2.4 99,492 + -0.5 99,492 + +0.7 99,492 + -1.3 99,492 + -1.3 99,492 + +0.7 99,492 + -0.0 99,493 - -0.1 99,493 - +1.3 99,493 - +0.3 99,891 + MPMX19_03855 0.21 -0.3 99,891 + MPMX19_03855 0.21 -0.5 99,891 + MPMX19_03855 0.21 -0.0 99,891 + MPMX19_03855 0.21 -1.9 99,891 + MPMX19_03855 0.21 -0.3 99,892 - MPMX19_03855 0.21 +0.7 99,892 - MPMX19_03855 0.21 +0.2 99,892 - MPMX19_03855 0.21 +0.3
Or see this region's nucleotide sequence