Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03812 and MPMX19_03813 overlap by 1 nucleotides MPMX19_03813 and MPMX19_03814 are separated by 1 nucleotides MPMX19_03814 and MPMX19_03815 are separated by 11 nucleotides MPMX19_03815 and MPMX19_03816 are separated by 89 nucleotides
MPMX19_03812: MPMX19_03812 - hypothetical protein, at 49,016 to 50,563
_03812
MPMX19_03813: MPMX19_03813 - hypothetical protein, at 50,563 to 51,336
_03813
MPMX19_03814: MPMX19_03814 - hypothetical protein, at 51,338 to 52,486
_03814
MPMX19_03815: MPMX19_03815 - hypothetical protein, at 52,498 to 52,992
_03815
MPMX19_03816: MPMX19_03816 - hypothetical protein, at 53,082 to 53,720
_03816
Position (kb) 51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 50.349 kb on + strand, within MPMX19_03812 at 50.350 kb on - strand, within MPMX19_03812 at 50.350 kb on - strand, within MPMX19_03812 at 50.399 kb on + strand, within MPMX19_03812 at 50.400 kb on - strand, within MPMX19_03812 at 50.400 kb on - strand, within MPMX19_03812 at 50.400 kb on - strand, within MPMX19_03812 at 50.463 kb on - strand at 50.571 kb on + strand at 50.571 kb on + strand at 50.571 kb on + strand at 50.572 kb on - strand at 50.572 kb on - strand at 50.572 kb on - strand at 50.572 kb on - strand at 50.572 kb on - strand at 50.590 kb on + strand at 50.746 kb on - strand, within MPMX19_03813 at 50.746 kb on - strand, within MPMX19_03813 at 50.839 kb on + strand, within MPMX19_03813 at 50.839 kb on + strand, within MPMX19_03813 at 50.840 kb on - strand, within MPMX19_03813 at 50.840 kb on - strand, within MPMX19_03813 at 50.844 kb on + strand, within MPMX19_03813 at 50.844 kb on + strand, within MPMX19_03813 at 50.845 kb on - strand, within MPMX19_03813 at 50.853 kb on + strand, within MPMX19_03813 at 50.854 kb on - strand, within MPMX19_03813 at 50.854 kb on - strand, within MPMX19_03813 at 50.884 kb on + strand, within MPMX19_03813 at 50.884 kb on + strand, within MPMX19_03813 at 50.884 kb on + strand, within MPMX19_03813 at 50.884 kb on + strand, within MPMX19_03813 at 50.884 kb on + strand, within MPMX19_03813 at 50.885 kb on - strand, within MPMX19_03813 at 50.885 kb on - strand, within MPMX19_03813 at 50.885 kb on - strand, within MPMX19_03813 at 50.885 kb on - strand, within MPMX19_03813 at 50.885 kb on - strand, within MPMX19_03813 at 50.935 kb on + strand, within MPMX19_03813 at 50.935 kb on + strand, within MPMX19_03813 at 50.935 kb on + strand, within MPMX19_03813 at 50.935 kb on + strand, within MPMX19_03813 at 50.935 kb on + strand, within MPMX19_03813 at 50.935 kb on + strand, within MPMX19_03813 at 50.935 kb on + strand, within MPMX19_03813 at 50.936 kb on - strand, within MPMX19_03813 at 50.936 kb on - strand, within MPMX19_03813 at 50.936 kb on - strand, within MPMX19_03813 at 50.936 kb on - strand, within MPMX19_03813 at 50.936 kb on - strand, within MPMX19_03813 at 50.936 kb on - strand, within MPMX19_03813 at 50.936 kb on - strand, within MPMX19_03813 at 50.936 kb on - strand, within MPMX19_03813 at 50.936 kb on - strand, within MPMX19_03813 at 50.936 kb on - strand, within MPMX19_03813 at 50.980 kb on + strand, within MPMX19_03813 at 50.980 kb on + strand, within MPMX19_03813 at 50.980 kb on + strand, within MPMX19_03813 at 50.980 kb on + strand, within MPMX19_03813 at 50.980 kb on + strand, within MPMX19_03813 at 50.980 kb on + strand, within MPMX19_03813 at 50.980 kb on + strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 50.981 kb on - strand, within MPMX19_03813 at 51.177 kb on + strand, within MPMX19_03813 at 51.177 kb on + strand, within MPMX19_03813 at 51.177 kb on + strand, within MPMX19_03813 at 51.177 kb on + strand, within MPMX19_03813 at 51.177 kb on - strand, within MPMX19_03813 at 51.178 kb on - strand, within MPMX19_03813 at 51.178 kb on - strand, within MPMX19_03813 at 51.178 kb on - strand, within MPMX19_03813 at 51.178 kb on - strand, within MPMX19_03813 at 51.178 kb on - strand, within MPMX19_03813 at 51.289 kb on + strand at 51.289 kb on + strand at 51.298 kb on + strand at 51.298 kb on + strand at 51.298 kb on + strand at 51.298 kb on + strand at 51.299 kb on - strand at 51.334 kb on + strand at 51.334 kb on + strand at 51.334 kb on + strand at 51.334 kb on + strand at 51.334 kb on + strand at 51.334 kb on + strand at 51.335 kb on - strand at 51.335 kb on - strand at 51.335 kb on - strand at 51.464 kb on + strand, within MPMX19_03814 at 51.464 kb on + strand, within MPMX19_03814 at 51.464 kb on + strand, within MPMX19_03814 at 51.464 kb on + strand, within MPMX19_03814 at 51.465 kb on - strand, within MPMX19_03814 at 51.465 kb on - strand, within MPMX19_03814 at 51.465 kb on - strand, within MPMX19_03814 at 51.465 kb on - strand, within MPMX19_03814 at 51.468 kb on - strand, within MPMX19_03814 at 51.468 kb on - strand, within MPMX19_03814 at 51.468 kb on - strand, within MPMX19_03814 at 51.512 kb on + strand, within MPMX19_03814 at 51.512 kb on + strand, within MPMX19_03814 at 51.512 kb on + strand, within MPMX19_03814 at 51.512 kb on + strand, within MPMX19_03814 at 51.512 kb on + strand, within MPMX19_03814 at 51.512 kb on + strand, within MPMX19_03814 at 51.513 kb on - strand, within MPMX19_03814 at 51.513 kb on - strand, within MPMX19_03814 at 51.513 kb on - strand, within MPMX19_03814 at 51.513 kb on - strand, within MPMX19_03814 at 51.513 kb on - strand, within MPMX19_03814 at 51.636 kb on + strand, within MPMX19_03814 at 51.636 kb on + strand, within MPMX19_03814 at 51.636 kb on + strand, within MPMX19_03814 at 51.637 kb on - strand, within MPMX19_03814 at 51.637 kb on - strand, within MPMX19_03814 at 51.637 kb on - strand, within MPMX19_03814 at 51.637 kb on - strand, within MPMX19_03814 at 51.997 kb on + strand, within MPMX19_03814 at 51.997 kb on + strand, within MPMX19_03814 at 51.997 kb on + strand, within MPMX19_03814 at 51.997 kb on + strand, within MPMX19_03814 at 51.997 kb on + strand, within MPMX19_03814 at 51.998 kb on - strand, within MPMX19_03814 at 51.998 kb on - strand, within MPMX19_03814 at 52.076 kb on + strand, within MPMX19_03814 at 52.077 kb on - strand, within MPMX19_03814 at 52.077 kb on - strand, within MPMX19_03814 at 52.077 kb on - strand, within MPMX19_03814 at 52.079 kb on + strand, within MPMX19_03814 at 52.079 kb on + strand, within MPMX19_03814 at 52.080 kb on - strand, within MPMX19_03814 at 52.080 kb on - strand, within MPMX19_03814 at 52.117 kb on + strand, within MPMX19_03814 at 52.117 kb on + strand, within MPMX19_03814 at 52.117 kb on + strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.184 kb on + strand, within MPMX19_03814 at 52.185 kb on - strand, within MPMX19_03814 at 52.185 kb on - strand, within MPMX19_03814 at 52.232 kb on + strand, within MPMX19_03814 at 52.233 kb on - strand, within MPMX19_03814 at 52.233 kb on - strand, within MPMX19_03814 at 52.233 kb on - strand, within MPMX19_03814 at 52.258 kb on + strand, within MPMX19_03814 at 52.259 kb on - strand, within MPMX19_03814 at 52.259 kb on - strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.362 kb on - strand, within MPMX19_03814 at 52.362 kb on - strand, within MPMX19_03814 at 52.362 kb on - strand, within MPMX19_03814 at 52.363 kb on + strand, within MPMX19_03814 at 52.364 kb on - strand, within MPMX19_03814 at 52.386 kb on - strand at 52.386 kb on - strand at 52.386 kb on - strand at 52.558 kb on + strand, within MPMX19_03815 at 52.558 kb on + strand, within MPMX19_03815 at 52.558 kb on + strand, within MPMX19_03815 at 52.558 kb on + strand, within MPMX19_03815 at 52.558 kb on + strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.673 kb on - strand, within MPMX19_03815 at 52.673 kb on - strand, within MPMX19_03815 at 52.708 kb on - strand, within MPMX19_03815 at 52.708 kb on - strand, within MPMX19_03815 at 52.757 kb on - strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.921 kb on - strand, within MPMX19_03815 at 52.921 kb on - strand, within MPMX19_03815 at 52.997 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.010 kb on - strand at 53.010 kb on - strand at 53.010 kb on - strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 50,349 + MPMX19_03812 0.86 +0.9 50,350 - MPMX19_03812 0.86 +0.1 50,350 - MPMX19_03812 0.86 +1.1 50,399 + MPMX19_03812 0.89 -1.6 50,400 - MPMX19_03812 0.89 -0.3 50,400 - MPMX19_03812 0.89 -1.3 50,400 - MPMX19_03812 0.89 -0.9 50,463 - -1.1 50,571 + -0.3 50,571 + -0.8 50,571 + +0.3 50,572 - -1.9 50,572 - +0.2 50,572 - -1.2 50,572 - -0.9 50,572 - -0.7 50,590 + -0.3 50,746 - MPMX19_03813 0.24 -0.6 50,746 - MPMX19_03813 0.24 -0.8 50,839 + MPMX19_03813 0.36 -0.7 50,839 + MPMX19_03813 0.36 -1.4 50,840 - MPMX19_03813 0.36 -0.8 50,840 - MPMX19_03813 0.36 -1.5 50,844 + MPMX19_03813 0.36 -0.2 50,844 + MPMX19_03813 0.36 -0.6 50,845 - MPMX19_03813 0.36 +0.7 50,853 + MPMX19_03813 0.37 -0.1 50,854 - MPMX19_03813 0.38 -0.1 50,854 - MPMX19_03813 0.38 -0.7 50,884 + MPMX19_03813 0.41 -0.2 50,884 + MPMX19_03813 0.41 -1.8 50,884 + MPMX19_03813 0.41 -0.7 50,884 + MPMX19_03813 0.41 -1.5 50,884 + MPMX19_03813 0.41 -0.4 50,885 - MPMX19_03813 0.42 +0.3 50,885 - MPMX19_03813 0.42 -2.1 50,885 - MPMX19_03813 0.42 +0.3 50,885 - MPMX19_03813 0.42 -0.8 50,885 - MPMX19_03813 0.42 -0.7 50,935 + MPMX19_03813 0.48 -1.6 50,935 + MPMX19_03813 0.48 -0.9 50,935 + MPMX19_03813 0.48 +1.9 50,935 + MPMX19_03813 0.48 -0.4 50,935 + MPMX19_03813 0.48 -0.0 50,935 + MPMX19_03813 0.48 -0.4 50,935 + MPMX19_03813 0.48 -0.1 50,936 - MPMX19_03813 0.48 -1.3 50,936 - MPMX19_03813 0.48 -0.5 50,936 - MPMX19_03813 0.48 +0.6 50,936 - MPMX19_03813 0.48 -0.3 50,936 - MPMX19_03813 0.48 +0.4 50,936 - MPMX19_03813 0.48 -0.2 50,936 - MPMX19_03813 0.48 +0.0 50,936 - MPMX19_03813 0.48 -0.4 50,936 - MPMX19_03813 0.48 -0.2 50,936 - MPMX19_03813 0.48 -0.4 50,980 + MPMX19_03813 0.54 -0.6 50,980 + MPMX19_03813 0.54 -2.0 50,980 + MPMX19_03813 0.54 +1.9 50,980 + MPMX19_03813 0.54 -1.0 50,980 + MPMX19_03813 0.54 -0.6 50,980 + MPMX19_03813 0.54 -1.8 50,980 + MPMX19_03813 0.54 -0.3 50,981 - MPMX19_03813 0.54 +0.2 50,981 - MPMX19_03813 0.54 -0.8 50,981 - MPMX19_03813 0.54 -0.3 50,981 - MPMX19_03813 0.54 -0.7 50,981 - MPMX19_03813 0.54 -1.6 50,981 - MPMX19_03813 0.54 +0.1 50,981 - MPMX19_03813 0.54 +0.2 50,981 - MPMX19_03813 0.54 -2.3 50,981 - MPMX19_03813 0.54 -0.6 50,981 - MPMX19_03813 0.54 -0.5 50,981 - MPMX19_03813 0.54 -2.1 50,981 - MPMX19_03813 0.54 -1.4 50,981 - MPMX19_03813 0.54 +0.2 50,981 - MPMX19_03813 0.54 -0.5 50,981 - MPMX19_03813 0.54 +0.2 50,981 - MPMX19_03813 0.54 -0.3 50,981 - MPMX19_03813 0.54 -0.4 50,981 - MPMX19_03813 0.54 +0.5 50,981 - MPMX19_03813 0.54 -0.4 51,177 + MPMX19_03813 0.79 +0.0 51,177 + MPMX19_03813 0.79 +0.8 51,177 + MPMX19_03813 0.79 -1.1 51,177 + MPMX19_03813 0.79 +0.9 51,177 - MPMX19_03813 0.79 -2.6 51,178 - MPMX19_03813 0.79 -1.0 51,178 - MPMX19_03813 0.79 -0.7 51,178 - MPMX19_03813 0.79 -0.7 51,178 - MPMX19_03813 0.79 +1.6 51,178 - MPMX19_03813 0.79 -0.1 51,289 + -0.1 51,289 + +0.4 51,298 + -0.3 51,298 + -0.0 51,298 + -2.0 51,298 + -0.1 51,299 - +0.2 51,334 + +0.6 51,334 + +0.3 51,334 + -1.2 51,334 + +2.2 51,334 + +0.4 51,334 + +0.9 51,335 - -0.7 51,335 - +1.1 51,335 - +0.3 51,464 + MPMX19_03814 0.11 +0.1 51,464 + MPMX19_03814 0.11 +0.2 51,464 + MPMX19_03814 0.11 +1.0 51,464 + MPMX19_03814 0.11 -0.5 51,465 - MPMX19_03814 0.11 +0.2 51,465 - MPMX19_03814 0.11 -1.1 51,465 - MPMX19_03814 0.11 -1.1 51,465 - MPMX19_03814 0.11 +0.0 51,468 - MPMX19_03814 0.11 -0.2 51,468 - MPMX19_03814 0.11 +0.1 51,468 - MPMX19_03814 0.11 -0.1 51,512 + MPMX19_03814 0.15 -1.7 51,512 + MPMX19_03814 0.15 -0.3 51,512 + MPMX19_03814 0.15 -0.6 51,512 + MPMX19_03814 0.15 +1.9 51,512 + MPMX19_03814 0.15 -1.6 51,512 + MPMX19_03814 0.15 +0.3 51,513 - MPMX19_03814 0.15 +0.5 51,513 - MPMX19_03814 0.15 +1.5 51,513 - MPMX19_03814 0.15 -0.3 51,513 - MPMX19_03814 0.15 -0.1 51,513 - MPMX19_03814 0.15 -1.0 51,636 + MPMX19_03814 0.26 -1.9 51,636 + MPMX19_03814 0.26 -0.8 51,636 + MPMX19_03814 0.26 -1.1 51,637 - MPMX19_03814 0.26 -0.6 51,637 - MPMX19_03814 0.26 -0.3 51,637 - MPMX19_03814 0.26 +0.1 51,637 - MPMX19_03814 0.26 +0.1 51,997 + MPMX19_03814 0.57 -1.2 51,997 + MPMX19_03814 0.57 -1.2 51,997 + MPMX19_03814 0.57 +0.9 51,997 + MPMX19_03814 0.57 -1.6 51,997 + MPMX19_03814 0.57 -0.4 51,998 - MPMX19_03814 0.57 +1.6 51,998 - MPMX19_03814 0.57 -0.9 52,076 + MPMX19_03814 0.64 +0.1 52,077 - MPMX19_03814 0.64 -0.7 52,077 - MPMX19_03814 0.64 -0.4 52,077 - MPMX19_03814 0.64 -1.7 52,079 + MPMX19_03814 0.64 -0.3 52,079 + MPMX19_03814 0.64 -0.7 52,080 - MPMX19_03814 0.65 +1.4 52,080 - MPMX19_03814 0.65 -0.6 52,117 + MPMX19_03814 0.68 +1.6 52,117 + MPMX19_03814 0.68 -1.6 52,117 + MPMX19_03814 0.68 -0.9 52,118 - MPMX19_03814 0.68 +0.9 52,118 - MPMX19_03814 0.68 +0.3 52,118 - MPMX19_03814 0.68 +0.7 52,118 - MPMX19_03814 0.68 -1.6 52,118 - MPMX19_03814 0.68 +0.3 52,118 - MPMX19_03814 0.68 -0.2 52,118 - MPMX19_03814 0.68 +0.5 52,118 - MPMX19_03814 0.68 +1.9 52,118 - MPMX19_03814 0.68 -0.9 52,184 + MPMX19_03814 0.74 -0.2 52,185 - MPMX19_03814 0.74 -0.4 52,185 - MPMX19_03814 0.74 +3.5 52,232 + MPMX19_03814 0.78 -1.0 52,233 - MPMX19_03814 0.78 +0.1 52,233 - MPMX19_03814 0.78 +0.6 52,233 - MPMX19_03814 0.78 +1.2 52,258 + MPMX19_03814 0.80 -0.2 52,259 - MPMX19_03814 0.80 -0.5 52,259 - MPMX19_03814 0.80 +0.1 52,361 + MPMX19_03814 0.89 -0.1 52,361 + MPMX19_03814 0.89 -0.5 52,361 + MPMX19_03814 0.89 +0.1 52,361 + MPMX19_03814 0.89 -0.0 52,361 + MPMX19_03814 0.89 +0.9 52,362 - MPMX19_03814 0.89 -0.3 52,362 - MPMX19_03814 0.89 -0.6 52,362 - MPMX19_03814 0.89 +0.3 52,363 + MPMX19_03814 0.89 +0.7 52,364 - MPMX19_03814 0.89 -0.1 52,386 - -1.8 52,386 - -0.2 52,386 - +0.1 52,558 + MPMX19_03815 0.12 -1.1 52,558 + MPMX19_03815 0.12 +0.2 52,558 + MPMX19_03815 0.12 -0.9 52,558 + MPMX19_03815 0.12 -0.7 52,558 + MPMX19_03815 0.12 -0.8 52,559 - MPMX19_03815 0.12 +0.4 52,559 - MPMX19_03815 0.12 +0.5 52,559 - MPMX19_03815 0.12 +0.3 52,559 - MPMX19_03815 0.12 +0.5 52,559 - MPMX19_03815 0.12 +1.9 52,559 - MPMX19_03815 0.12 +0.8 52,673 - MPMX19_03815 0.35 +1.2 52,673 - MPMX19_03815 0.35 -1.3 52,708 - MPMX19_03815 0.42 -1.0 52,708 - MPMX19_03815 0.42 -0.3 52,757 - MPMX19_03815 0.52 -0.1 52,920 + MPMX19_03815 0.85 +0.1 52,920 + MPMX19_03815 0.85 -0.3 52,920 + MPMX19_03815 0.85 +0.2 52,920 + MPMX19_03815 0.85 -1.4 52,920 + MPMX19_03815 0.85 -1.9 52,920 + MPMX19_03815 0.85 -1.7 52,921 - MPMX19_03815 0.85 -2.8 52,921 - MPMX19_03815 0.85 -1.0 52,997 + +0.9 53,009 + -0.9 53,009 + +0.4 53,009 + +1.9 53,009 + -1.0 53,009 + -0.1 53,009 + -1.8 53,010 - -0.4 53,010 - -0.6 53,010 - -1.2 53,058 + +0.3 53,058 + -0.5 53,058 + -0.0 53,058 + +0.1 53,058 + -0.3 53,058 + +0.2 53,058 + +1.2
Or see this region's nucleotide sequence