Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03527

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03525 and MPMX19_03526 overlap by 4 nucleotidesMPMX19_03526 and MPMX19_03527 are separated by 57 nucleotidesMPMX19_03527 and MPMX19_03528 are separated by 12 nucleotides MPMX19_03525: MPMX19_03525 - 3-dehydroquinate dehydratase, at 945,356 to 945,805 _03525 MPMX19_03526: MPMX19_03526 - Quinate/shikimate dehydrogenase (NAD(+)), at 945,802 to 946,704 _03526 MPMX19_03527: MPMX19_03527 - hypothetical protein, at 946,762 to 947,388 _03527 MPMX19_03528: MPMX19_03528 - Sialic acid TRAP transporter large permease protein SiaM, at 947,401 to 948,681 _03528 Position (kb) 946 947 948Strain fitness (log2 ratio) -2 -1 0 1 2at 945.843 kb on + strandat 945.843 kb on + strandat 945.843 kb on + strandat 945.844 kb on - strandat 945.844 kb on - strandat 945.844 kb on - strandat 945.844 kb on - strandat 945.844 kb on - strandat 945.938 kb on - strand, within MPMX19_03526at 945.938 kb on - strand, within MPMX19_03526at 945.938 kb on - strand, within MPMX19_03526at 946.018 kb on + strand, within MPMX19_03526at 946.018 kb on + strand, within MPMX19_03526at 946.018 kb on + strand, within MPMX19_03526at 946.019 kb on - strand, within MPMX19_03526at 946.019 kb on - strand, within MPMX19_03526at 946.019 kb on - strand, within MPMX19_03526at 946.039 kb on + strand, within MPMX19_03526at 946.039 kb on + strand, within MPMX19_03526at 946.039 kb on + strand, within MPMX19_03526at 946.039 kb on + strand, within MPMX19_03526at 946.040 kb on - strand, within MPMX19_03526at 946.040 kb on - strand, within MPMX19_03526at 946.040 kb on - strand, within MPMX19_03526at 946.519 kb on + strand, within MPMX19_03526at 946.519 kb on + strand, within MPMX19_03526at 946.520 kb on - strand, within MPMX19_03526at 946.520 kb on - strand, within MPMX19_03526at 946.705 kb on + strandat 946.706 kb on - strandat 946.722 kb on + strandat 946.722 kb on + strandat 946.723 kb on - strandat 946.723 kb on - strandat 946.723 kb on - strandat 946.723 kb on - strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.784 kb on - strandat 946.784 kb on - strandat 946.865 kb on - strand, within MPMX19_03527at 946.981 kb on - strand, within MPMX19_03527at 947.147 kb on - strand, within MPMX19_03527at 947.203 kb on + strand, within MPMX19_03527at 947.203 kb on + strand, within MPMX19_03527at 947.203 kb on + strand, within MPMX19_03527at 947.203 kb on + strand, within MPMX19_03527at 947.203 kb on + strand, within MPMX19_03527at 947.203 kb on + strand, within MPMX19_03527at 947.204 kb on - strand, within MPMX19_03527at 947.204 kb on - strand, within MPMX19_03527at 947.204 kb on - strand, within MPMX19_03527at 947.204 kb on - strand, within MPMX19_03527at 947.204 kb on - strand, within MPMX19_03527at 947.204 kb on - strand, within MPMX19_03527at 947.349 kb on + strandat 947.349 kb on + strandat 947.350 kb on - strandat 947.350 kb on - strandat 947.464 kb on + strandat 947.465 kb on - strandat 947.683 kb on + strand, within MPMX19_03528at 947.684 kb on - strand, within MPMX19_03528at 947.684 kb on - strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 948.139 kb on + strand, within MPMX19_03528at 948.140 kb on - strand, within MPMX19_03528at 948.166 kb on + strand, within MPMX19_03528at 948.166 kb on + strand, within MPMX19_03528at 948.167 kb on - strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.204 kb on - strand, within MPMX19_03528

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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945,843 + -0.8
945,843 + +0.2
945,843 + -0.2
945,844 - -1.1
945,844 - -0.3
945,844 - +0.8
945,844 - +1.3
945,844 - -0.5
945,938 - MPMX19_03526 0.15 +1.1
945,938 - MPMX19_03526 0.15 -0.3
945,938 - MPMX19_03526 0.15 +0.2
946,018 + MPMX19_03526 0.24 +1.2
946,018 + MPMX19_03526 0.24 +0.3
946,018 + MPMX19_03526 0.24 -0.9
946,019 - MPMX19_03526 0.24 -0.8
946,019 - MPMX19_03526 0.24 -0.8
946,019 - MPMX19_03526 0.24 -0.6
946,039 + MPMX19_03526 0.26 -0.2
946,039 + MPMX19_03526 0.26 -0.7
946,039 + MPMX19_03526 0.26 +0.1
946,039 + MPMX19_03526 0.26 -0.4
946,040 - MPMX19_03526 0.26 -0.7
946,040 - MPMX19_03526 0.26 -1.2
946,040 - MPMX19_03526 0.26 -0.7
946,519 + MPMX19_03526 0.79 -1.1
946,519 + MPMX19_03526 0.79 -0.9
946,520 - MPMX19_03526 0.80 -0.4
946,520 - MPMX19_03526 0.80 -0.9
946,705 + -1.8
946,706 - -1.8
946,722 + +0.1
946,722 + +0.4
946,723 - +0.7
946,723 - -0.0
946,723 - -1.7
946,723 - +1.0
946,728 + -0.5
946,728 + +0.2
946,728 + +0.6
946,728 + -1.3
946,728 + -0.3
946,728 + -0.2
946,728 + -0.0
946,728 + -0.1
946,728 + -0.3
946,728 + -1.0
946,728 + -0.3
946,729 - -0.4
946,729 - +0.2
946,729 - +0.2
946,729 - -1.3
946,729 - -0.5
946,729 - +0.8
946,729 - -1.0
946,729 - +0.4
946,729 - +0.2
946,729 - +0.5
946,783 + +0.4
946,783 + -0.3
946,783 + -0.7
946,783 + -1.3
946,783 + -1.3
946,783 + +1.1
946,784 - +0.3
946,784 - -0.5
946,865 - MPMX19_03527 0.16 +0.2
946,981 - MPMX19_03527 0.35 +0.5
947,147 - MPMX19_03527 0.61 -0.5
947,203 + MPMX19_03527 0.70 +0.8
947,203 + MPMX19_03527 0.70 +0.1
947,203 + MPMX19_03527 0.70 -1.3
947,203 + MPMX19_03527 0.70 +1.8
947,203 + MPMX19_03527 0.70 +0.0
947,203 + MPMX19_03527 0.70 +1.0
947,204 - MPMX19_03527 0.70 -0.9
947,204 - MPMX19_03527 0.70 -0.8
947,204 - MPMX19_03527 0.70 -1.3
947,204 - MPMX19_03527 0.70 -0.0
947,204 - MPMX19_03527 0.70 -0.9
947,204 - MPMX19_03527 0.70 -0.2
947,349 + -0.1
947,349 + -0.3
947,350 - -0.0
947,350 - -0.1
947,464 + +0.5
947,465 - +0.1
947,683 + MPMX19_03528 0.22 -1.0
947,684 - MPMX19_03528 0.22 -1.3
947,684 - MPMX19_03528 0.22 +1.5
947,875 + MPMX19_03528 0.37 -0.8
947,875 + MPMX19_03528 0.37 -0.8
947,875 + MPMX19_03528 0.37 +0.5
947,875 + MPMX19_03528 0.37 -0.3
947,875 + MPMX19_03528 0.37 -1.4
947,875 + MPMX19_03528 0.37 -0.5
947,876 - MPMX19_03528 0.37 -0.7
947,876 - MPMX19_03528 0.37 -0.8
947,876 - MPMX19_03528 0.37 -0.7
947,876 - MPMX19_03528 0.37 -0.9
947,876 - MPMX19_03528 0.37 +0.9
947,876 - MPMX19_03528 0.37 -0.7
947,876 - MPMX19_03528 0.37 +0.1
947,971 + MPMX19_03528 0.44 -0.1
947,971 + MPMX19_03528 0.44 -1.2
947,971 + MPMX19_03528 0.44 +0.7
947,971 + MPMX19_03528 0.44 +0.2
947,971 + MPMX19_03528 0.44 +0.6
947,971 + MPMX19_03528 0.44 -0.0
947,971 + MPMX19_03528 0.44 +0.8
947,971 + MPMX19_03528 0.44 +0.4
947,971 + MPMX19_03528 0.44 -0.2
947,972 - MPMX19_03528 0.45 -0.6
947,972 - MPMX19_03528 0.45 +0.8
947,972 - MPMX19_03528 0.45 -1.8
947,972 - MPMX19_03528 0.45 +0.4
947,972 - MPMX19_03528 0.45 +1.1
947,972 - MPMX19_03528 0.45 -1.0
947,972 - MPMX19_03528 0.45 -2.3
947,972 - MPMX19_03528 0.45 -0.2
947,972 - MPMX19_03528 0.45 -1.3
947,972 - MPMX19_03528 0.45 -0.2
948,139 + MPMX19_03528 0.58 -0.9
948,140 - MPMX19_03528 0.58 +1.1
948,166 + MPMX19_03528 0.60 +0.5
948,166 + MPMX19_03528 0.60 -0.4
948,167 - MPMX19_03528 0.60 +0.0
948,193 + MPMX19_03528 0.62 -1.6
948,193 + MPMX19_03528 0.62 +0.4
948,193 + MPMX19_03528 0.62 +1.0
948,193 + MPMX19_03528 0.62 -0.8
948,193 + MPMX19_03528 0.62 -0.6
948,193 + MPMX19_03528 0.62 -0.9
948,193 + MPMX19_03528 0.62 -0.8
948,193 + MPMX19_03528 0.62 -1.3
948,193 + MPMX19_03528 0.62 -0.4
948,193 + MPMX19_03528 0.62 +0.9
948,193 + MPMX19_03528 0.62 -0.5
948,194 - MPMX19_03528 0.62 -0.8
948,194 - MPMX19_03528 0.62 +0.0
948,194 - MPMX19_03528 0.62 +0.2
948,194 - MPMX19_03528 0.62 -0.4
948,194 - MPMX19_03528 0.62 -1.6
948,194 - MPMX19_03528 0.62 -0.8
948,194 - MPMX19_03528 0.62 -0.6
948,204 - MPMX19_03528 0.63 -0.6

Or see this region's nucleotide sequence