Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03211

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03210 and MPMX19_03211 are separated by 22 nucleotidesMPMX19_03211 and MPMX19_03212 are separated by 28 nucleotidesMPMX19_03212 and MPMX19_03213 are separated by 93 nucleotides MPMX19_03210: MPMX19_03210 - Haloalkane dehalogenase, at 509,304 to 510,317 _03210 MPMX19_03211: MPMX19_03211 - hypothetical protein, at 510,340 to 511,605 _03211 MPMX19_03212: MPMX19_03212 - hypothetical protein, at 511,634 to 512,077 _03212 MPMX19_03213: MPMX19_03213 - hypothetical protein, at 512,171 to 512,656 _03213 Position (kb) 510 511 512Strain fitness (log2 ratio) -2 -1 0 1 2at 509.505 kb on + strand, within MPMX19_03210at 509.506 kb on - strand, within MPMX19_03210at 509.506 kb on - strand, within MPMX19_03210at 509.506 kb on - strand, within MPMX19_03210at 509.506 kb on - strand, within MPMX19_03210at 509.506 kb on - strand, within MPMX19_03210at 509.633 kb on + strand, within MPMX19_03210at 509.664 kb on + strand, within MPMX19_03210at 509.665 kb on - strand, within MPMX19_03210at 509.665 kb on - strand, within MPMX19_03210at 509.665 kb on - strand, within MPMX19_03210at 509.665 kb on - strand, within MPMX19_03210at 509.718 kb on + strand, within MPMX19_03210at 509.718 kb on + strand, within MPMX19_03210at 509.719 kb on - strand, within MPMX19_03210at 509.719 kb on - strand, within MPMX19_03210at 509.719 kb on - strand, within MPMX19_03210at 509.772 kb on + strand, within MPMX19_03210at 509.772 kb on + strand, within MPMX19_03210at 509.772 kb on + strand, within MPMX19_03210at 509.773 kb on - strand, within MPMX19_03210at 509.773 kb on - strand, within MPMX19_03210at 509.784 kb on + strand, within MPMX19_03210at 509.784 kb on + strand, within MPMX19_03210at 509.907 kb on + strand, within MPMX19_03210at 509.907 kb on + strand, within MPMX19_03210at 509.907 kb on + strand, within MPMX19_03210at 509.907 kb on + strand, within MPMX19_03210at 509.908 kb on - strand, within MPMX19_03210at 509.908 kb on - strand, within MPMX19_03210at 509.908 kb on - strand, within MPMX19_03210at 509.908 kb on - strand, within MPMX19_03210at 509.908 kb on - strand, within MPMX19_03210at 510.001 kb on - strand, within MPMX19_03210at 510.001 kb on - strand, within MPMX19_03210at 510.048 kb on + strand, within MPMX19_03210at 510.048 kb on + strand, within MPMX19_03210at 510.048 kb on + strand, within MPMX19_03210at 510.049 kb on - strand, within MPMX19_03210at 510.049 kb on - strand, within MPMX19_03210at 510.049 kb on - strand, within MPMX19_03210at 510.060 kb on + strand, within MPMX19_03210at 510.060 kb on + strand, within MPMX19_03210at 510.061 kb on - strand, within MPMX19_03210at 510.061 kb on - strand, within MPMX19_03210at 510.061 kb on - strand, within MPMX19_03210at 510.061 kb on - strand, within MPMX19_03210at 510.099 kb on + strand, within MPMX19_03210at 510.100 kb on - strand, within MPMX19_03210at 510.100 kb on - strand, within MPMX19_03210at 510.100 kb on - strand, within MPMX19_03210at 510.100 kb on - strand, within MPMX19_03210at 510.138 kb on + strand, within MPMX19_03210at 510.138 kb on + strand, within MPMX19_03210at 510.138 kb on + strand, within MPMX19_03210at 510.138 kb on + strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.183 kb on + strand, within MPMX19_03210at 510.183 kb on + strand, within MPMX19_03210at 510.183 kb on + strand, within MPMX19_03210at 510.183 kb on + strand, within MPMX19_03210at 510.183 kb on + strand, within MPMX19_03210at 510.183 kb on + strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.234 kb on + strandat 510.234 kb on + strandat 510.316 kb on - strandat 510.462 kb on + strandat 510.462 kb on + strandat 510.462 kb on + strandat 510.462 kb on + strandat 510.462 kb on + strandat 510.462 kb on + strandat 510.462 kb on + strandat 510.463 kb on - strandat 510.473 kb on + strand, within MPMX19_03211at 510.473 kb on + strand, within MPMX19_03211at 510.616 kb on + strand, within MPMX19_03211at 510.617 kb on - strand, within MPMX19_03211at 510.617 kb on - strand, within MPMX19_03211at 510.631 kb on + strand, within MPMX19_03211at 510.631 kb on + strand, within MPMX19_03211at 510.632 kb on - strand, within MPMX19_03211at 510.632 kb on - strand, within MPMX19_03211at 511.165 kb on + strand, within MPMX19_03211at 511.165 kb on + strand, within MPMX19_03211at 511.165 kb on + strand, within MPMX19_03211at 511.166 kb on - strand, within MPMX19_03211at 511.166 kb on - strand, within MPMX19_03211at 511.205 kb on - strand, within MPMX19_03211at 511.246 kb on + strand, within MPMX19_03211at 511.247 kb on - strand, within MPMX19_03211at 511.247 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.372 kb on + strand, within MPMX19_03211at 511.372 kb on + strand, within MPMX19_03211at 511.372 kb on + strand, within MPMX19_03211at 511.373 kb on - strand, within MPMX19_03211at 511.373 kb on - strand, within MPMX19_03211at 511.459 kb on + strand, within MPMX19_03211at 511.507 kb on + strandat 511.508 kb on - strandat 511.620 kb on - strandat 511.622 kb on - strandat 511.622 kb on - strandat 511.794 kb on - strand, within MPMX19_03212at 511.813 kb on + strand, within MPMX19_03212at 511.813 kb on + strand, within MPMX19_03212at 511.813 kb on + strand, within MPMX19_03212at 511.813 kb on + strand, within MPMX19_03212at 511.813 kb on + strand, within MPMX19_03212at 511.814 kb on - strand, within MPMX19_03212at 512.003 kb on + strand, within MPMX19_03212at 512.003 kb on + strand, within MPMX19_03212at 512.003 kb on + strand, within MPMX19_03212at 512.004 kb on - strand, within MPMX19_03212at 512.004 kb on - strand, within MPMX19_03212at 512.324 kb on + strand, within MPMX19_03213at 512.324 kb on + strand, within MPMX19_03213at 512.324 kb on + strand, within MPMX19_03213at 512.325 kb on - strand, within MPMX19_03213at 512.393 kb on - strand, within MPMX19_03213at 512.468 kb on + strand, within MPMX19_03213at 512.468 kb on + strand, within MPMX19_03213

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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509,505 + MPMX19_03210 0.20 -2.2
509,506 - MPMX19_03210 0.20 -2.0
509,506 - MPMX19_03210 0.20 -0.6
509,506 - MPMX19_03210 0.20 -1.2
509,506 - MPMX19_03210 0.20 -0.1
509,506 - MPMX19_03210 0.20 -0.2
509,633 + MPMX19_03210 0.32 +0.8
509,664 + MPMX19_03210 0.36 +0.4
509,665 - MPMX19_03210 0.36 -0.5
509,665 - MPMX19_03210 0.36 -1.1
509,665 - MPMX19_03210 0.36 +0.7
509,665 - MPMX19_03210 0.36 -0.4
509,718 + MPMX19_03210 0.41 -0.1
509,718 + MPMX19_03210 0.41 -0.2
509,719 - MPMX19_03210 0.41 -0.8
509,719 - MPMX19_03210 0.41 +0.8
509,719 - MPMX19_03210 0.41 -0.2
509,772 + MPMX19_03210 0.46 -1.1
509,772 + MPMX19_03210 0.46 -0.6
509,772 + MPMX19_03210 0.46 -0.0
509,773 - MPMX19_03210 0.46 -1.5
509,773 - MPMX19_03210 0.46 +0.6
509,784 + MPMX19_03210 0.47 +0.3
509,784 + MPMX19_03210 0.47 -0.2
509,907 + MPMX19_03210 0.59 +1.3
509,907 + MPMX19_03210 0.59 -1.0
509,907 + MPMX19_03210 0.59 -2.0
509,907 + MPMX19_03210 0.59 -1.3
509,908 - MPMX19_03210 0.60 -1.6
509,908 - MPMX19_03210 0.60 +0.8
509,908 - MPMX19_03210 0.60 -0.7
509,908 - MPMX19_03210 0.60 -0.3
509,908 - MPMX19_03210 0.60 +0.8
510,001 - MPMX19_03210 0.69 -0.2
510,001 - MPMX19_03210 0.69 -0.3
510,048 + MPMX19_03210 0.73 -0.3
510,048 + MPMX19_03210 0.73 -0.6
510,048 + MPMX19_03210 0.73 +0.2
510,049 - MPMX19_03210 0.73 -1.6
510,049 - MPMX19_03210 0.73 -1.7
510,049 - MPMX19_03210 0.73 -0.7
510,060 + MPMX19_03210 0.75 -0.2
510,060 + MPMX19_03210 0.75 -0.6
510,061 - MPMX19_03210 0.75 -0.2
510,061 - MPMX19_03210 0.75 +0.1
510,061 - MPMX19_03210 0.75 +0.3
510,061 - MPMX19_03210 0.75 -1.1
510,099 + MPMX19_03210 0.78 -1.2
510,100 - MPMX19_03210 0.79 +0.7
510,100 - MPMX19_03210 0.79 +1.4
510,100 - MPMX19_03210 0.79 +1.3
510,100 - MPMX19_03210 0.79 -1.4
510,138 + MPMX19_03210 0.82 -0.6
510,138 + MPMX19_03210 0.82 -0.2
510,138 + MPMX19_03210 0.82 -1.9
510,138 + MPMX19_03210 0.82 +0.6
510,139 - MPMX19_03210 0.82 -0.2
510,139 - MPMX19_03210 0.82 -0.7
510,139 - MPMX19_03210 0.82 -2.1
510,139 - MPMX19_03210 0.82 -1.6
510,139 - MPMX19_03210 0.82 +0.1
510,139 - MPMX19_03210 0.82 -1.4
510,139 - MPMX19_03210 0.82 +0.3
510,139 - MPMX19_03210 0.82 -2.2
510,183 + MPMX19_03210 0.87 -2.2
510,183 + MPMX19_03210 0.87 +1.1
510,183 + MPMX19_03210 0.87 -1.6
510,183 + MPMX19_03210 0.87 -1.2
510,183 + MPMX19_03210 0.87 -0.8
510,183 + MPMX19_03210 0.87 +1.3
510,184 - MPMX19_03210 0.87 -1.0
510,184 - MPMX19_03210 0.87 -0.7
510,184 - MPMX19_03210 0.87 +0.3
510,184 - MPMX19_03210 0.87 -1.5
510,184 - MPMX19_03210 0.87 +0.7
510,184 - MPMX19_03210 0.87 +1.4
510,184 - MPMX19_03210 0.87 +0.0
510,184 - MPMX19_03210 0.87 +0.0
510,234 + +0.7
510,234 + -2.3
510,316 - -0.3
510,462 + -0.5
510,462 + -2.3
510,462 + -0.5
510,462 + +2.2
510,462 + +0.4
510,462 + -1.2
510,462 + -1.2
510,463 - -0.7
510,473 + MPMX19_03211 0.11 +0.3
510,473 + MPMX19_03211 0.11 -0.5
510,616 + MPMX19_03211 0.22 -0.5
510,617 - MPMX19_03211 0.22 +0.0
510,617 - MPMX19_03211 0.22 -0.0
510,631 + MPMX19_03211 0.23 +0.3
510,631 + MPMX19_03211 0.23 -0.9
510,632 - MPMX19_03211 0.23 -2.0
510,632 - MPMX19_03211 0.23 -0.7
511,165 + MPMX19_03211 0.65 -0.8
511,165 + MPMX19_03211 0.65 -2.1
511,165 + MPMX19_03211 0.65 -1.0
511,166 - MPMX19_03211 0.65 +1.3
511,166 - MPMX19_03211 0.65 -1.4
511,205 - MPMX19_03211 0.68 -1.2
511,246 + MPMX19_03211 0.72 -0.8
511,247 - MPMX19_03211 0.72 +0.7
511,247 - MPMX19_03211 0.72 -1.3
511,334 - MPMX19_03211 0.79 -1.2
511,334 - MPMX19_03211 0.79 -0.6
511,334 - MPMX19_03211 0.79 +1.1
511,334 - MPMX19_03211 0.79 -1.3
511,334 - MPMX19_03211 0.79 -1.2
511,334 - MPMX19_03211 0.79 -2.0
511,334 - MPMX19_03211 0.79 -0.2
511,372 + MPMX19_03211 0.82 -1.3
511,372 + MPMX19_03211 0.82 -1.0
511,372 + MPMX19_03211 0.82 -0.1
511,373 - MPMX19_03211 0.82 -1.2
511,373 - MPMX19_03211 0.82 +0.8
511,459 + MPMX19_03211 0.88 -1.0
511,507 + -0.9
511,508 - -2.0
511,620 - +0.3
511,622 - +1.8
511,622 - -1.6
511,794 - MPMX19_03212 0.36 +0.3
511,813 + MPMX19_03212 0.40 +0.7
511,813 + MPMX19_03212 0.40 +1.0
511,813 + MPMX19_03212 0.40 +1.3
511,813 + MPMX19_03212 0.40 +0.2
511,813 + MPMX19_03212 0.40 +0.7
511,814 - MPMX19_03212 0.41 +0.3
512,003 + MPMX19_03212 0.83 +0.3
512,003 + MPMX19_03212 0.83 +0.0
512,003 + MPMX19_03212 0.83 -0.1
512,004 - MPMX19_03212 0.83 -1.0
512,004 - MPMX19_03212 0.83 -2.0
512,324 + MPMX19_03213 0.31 -2.0
512,324 + MPMX19_03213 0.31 +1.1
512,324 + MPMX19_03213 0.31 -0.4
512,325 - MPMX19_03213 0.32 -0.5
512,393 - MPMX19_03213 0.46 +0.3
512,468 + MPMX19_03213 0.61 -0.7
512,468 + MPMX19_03213 0.61 +0.0

Or see this region's nucleotide sequence