Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02854 and MPMX19_02855 are separated by 3 nucleotides MPMX19_02855 and MPMX19_02856 are separated by 241 nucleotides
MPMX19_02854: MPMX19_02854 - Gluconate 2-dehydrogenase flavoprotein, at 96,743 to 98,515
_02854
MPMX19_02855: MPMX19_02855 - hypothetical protein, at 98,519 to 99,301
_02855
MPMX19_02856: MPMX19_02856 - hypothetical protein, at 99,543 to 101,222
_02856
Position (kb) 98
99
100 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 97.524 kb on + strand, within MPMX19_02854 at 97.525 kb on - strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.635 kb on + strand, within MPMX19_02854 at 97.636 kb on - strand, within MPMX19_02854 at 97.636 kb on - strand, within MPMX19_02854 at 97.636 kb on - strand, within MPMX19_02854 at 97.636 kb on - strand, within MPMX19_02854 at 97.636 kb on - strand, within MPMX19_02854 at 97.636 kb on - strand, within MPMX19_02854 at 97.636 kb on - strand, within MPMX19_02854 at 97.636 kb on - strand, within MPMX19_02854 at 97.768 kb on - strand, within MPMX19_02854 at 97.768 kb on - strand, within MPMX19_02854 at 97.768 kb on - strand, within MPMX19_02854 at 97.768 kb on - strand, within MPMX19_02854 at 97.782 kb on + strand, within MPMX19_02854 at 97.782 kb on + strand, within MPMX19_02854 at 97.782 kb on + strand, within MPMX19_02854 at 97.783 kb on - strand, within MPMX19_02854 at 97.783 kb on - strand, within MPMX19_02854 at 97.783 kb on - strand, within MPMX19_02854 at 97.783 kb on - strand, within MPMX19_02854 at 97.842 kb on + strand, within MPMX19_02854 at 97.842 kb on + strand, within MPMX19_02854 at 97.842 kb on + strand, within MPMX19_02854 at 97.842 kb on + strand, within MPMX19_02854 at 97.843 kb on - strand, within MPMX19_02854 at 97.843 kb on - strand, within MPMX19_02854 at 97.843 kb on - strand, within MPMX19_02854 at 97.884 kb on + strand, within MPMX19_02854 at 97.884 kb on + strand, within MPMX19_02854 at 97.884 kb on + strand, within MPMX19_02854 at 97.884 kb on + strand, within MPMX19_02854 at 97.884 kb on + strand, within MPMX19_02854 at 97.884 kb on + strand, within MPMX19_02854 at 97.884 kb on + strand, within MPMX19_02854 at 97.884 kb on + strand, within MPMX19_02854 at 97.884 kb on + strand, within MPMX19_02854 at 97.885 kb on - strand, within MPMX19_02854 at 97.885 kb on - strand, within MPMX19_02854 at 97.885 kb on - strand, within MPMX19_02854 at 97.885 kb on - strand, within MPMX19_02854 at 97.885 kb on - strand, within MPMX19_02854 at 97.885 kb on - strand, within MPMX19_02854 at 97.885 kb on - strand, within MPMX19_02854 at 97.885 kb on - strand, within MPMX19_02854 at 97.885 kb on - strand, within MPMX19_02854 at 97.926 kb on + strand, within MPMX19_02854 at 97.927 kb on - strand, within MPMX19_02854 at 98.043 kb on + strand, within MPMX19_02854 at 98.043 kb on + strand, within MPMX19_02854 at 98.043 kb on + strand, within MPMX19_02854 at 98.058 kb on + strand, within MPMX19_02854 at 98.058 kb on + strand, within MPMX19_02854 at 98.059 kb on - strand, within MPMX19_02854 at 98.059 kb on - strand, within MPMX19_02854 at 98.059 kb on - strand, within MPMX19_02854 at 98.059 kb on - strand, within MPMX19_02854 at 98.061 kb on + strand, within MPMX19_02854 at 98.079 kb on + strand, within MPMX19_02854 at 98.079 kb on + strand, within MPMX19_02854 at 98.079 kb on + strand, within MPMX19_02854 at 98.079 kb on + strand, within MPMX19_02854 at 98.079 kb on + strand, within MPMX19_02854 at 98.079 kb on + strand, within MPMX19_02854 at 98.079 kb on + strand, within MPMX19_02854 at 98.079 kb on + strand, within MPMX19_02854 at 98.079 kb on + strand, within MPMX19_02854 at 98.079 kb on + strand, within MPMX19_02854 at 98.079 kb on + strand, within MPMX19_02854 at 98.079 kb on + strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.080 kb on - strand, within MPMX19_02854 at 98.118 kb on - strand, within MPMX19_02854 at 98.340 kb on + strand at 98.341 kb on - strand at 98.341 kb on - strand at 98.341 kb on - strand at 98.341 kb on - strand at 98.361 kb on + strand at 98.361 kb on + strand at 98.574 kb on + strand at 98.574 kb on + strand at 98.574 kb on + strand at 98.574 kb on + strand at 98.574 kb on + strand at 98.574 kb on + strand at 98.575 kb on - strand at 98.614 kb on - strand, within MPMX19_02855 at 98.877 kb on + strand, within MPMX19_02855 at 98.949 kb on + strand, within MPMX19_02855 at 98.949 kb on + strand, within MPMX19_02855 at 98.949 kb on + strand, within MPMX19_02855 at 98.949 kb on + strand, within MPMX19_02855 at 98.949 kb on + strand, within MPMX19_02855 at 98.949 kb on + strand, within MPMX19_02855 at 98.949 kb on + strand, within MPMX19_02855 at 98.949 kb on + strand, within MPMX19_02855 at 98.949 kb on + strand, within MPMX19_02855 at 98.949 kb on + strand, within MPMX19_02855 at 98.950 kb on - strand, within MPMX19_02855 at 98.950 kb on - strand, within MPMX19_02855 at 98.950 kb on - strand, within MPMX19_02855 at 98.950 kb on - strand, within MPMX19_02855 at 98.970 kb on + strand, within MPMX19_02855 at 98.970 kb on + strand, within MPMX19_02855 at 98.971 kb on - strand, within MPMX19_02855 at 99.100 kb on - strand, within MPMX19_02855 at 99.396 kb on + strand at 99.396 kb on + strand at 99.396 kb on + strand at 99.396 kb on + strand at 99.397 kb on - strand at 99.397 kb on - strand at 99.397 kb on - strand at 99.397 kb on - strand at 99.476 kb on - strand at 99.476 kb on - strand at 99.476 kb on - strand at 99.513 kb on + strand at 99.514 kb on - strand at 99.514 kb on - strand at 99.514 kb on - strand at 99.603 kb on + strand at 99.610 kb on + strand at 99.611 kb on - strand at 99.758 kb on - strand, within MPMX19_02856 at 99.758 kb on - strand, within MPMX19_02856 at 99.758 kb on - strand, within MPMX19_02856 at 99.758 kb on - strand, within MPMX19_02856 at 99.758 kb on - strand, within MPMX19_02856 at 99.758 kb on - strand, within MPMX19_02856 at 99.895 kb on + strand, within MPMX19_02856 at 99.895 kb on + strand, within MPMX19_02856 at 99.895 kb on + strand, within MPMX19_02856 at 99.895 kb on + strand, within MPMX19_02856 at 99.896 kb on - strand, within MPMX19_02856 at 99.896 kb on - strand, within MPMX19_02856 at 99.896 kb on - strand, within MPMX19_02856 at 99.896 kb on - strand, within MPMX19_02856 at 99.896 kb on - strand, within MPMX19_02856 at 99.896 kb on - strand, within MPMX19_02856 at 99.922 kb on + strand, within MPMX19_02856 at 99.922 kb on + strand, within MPMX19_02856 at 99.931 kb on + strand, within MPMX19_02856 at 99.931 kb on + strand, within MPMX19_02856 at 99.931 kb on + strand, within MPMX19_02856 at 99.932 kb on - strand, within MPMX19_02856 at 99.932 kb on - strand, within MPMX19_02856 at 99.991 kb on + strand, within MPMX19_02856 at 99.991 kb on + strand, within MPMX19_02856 at 99.992 kb on - strand, within MPMX19_02856 at 99.992 kb on - strand, within MPMX19_02856 at 99.992 kb on - strand, within MPMX19_02856 at 99.997 kb on + strand, within MPMX19_02856 at 99.997 kb on + strand, within MPMX19_02856 at 99.997 kb on + strand, within MPMX19_02856 at 99.997 kb on + strand, within MPMX19_02856 at 99.997 kb on + strand, within MPMX19_02856 at 99.997 kb on + strand, within MPMX19_02856 at 99.997 kb on + strand, within MPMX19_02856 at 99.997 kb on + strand, within MPMX19_02856 at 99.997 kb on + strand, within MPMX19_02856 at 99.997 kb on + strand, within MPMX19_02856 at 99.997 kb on + strand, within MPMX19_02856 at 99.998 kb on - strand, within MPMX19_02856 at 99.998 kb on - strand, within MPMX19_02856 at 99.998 kb on - strand, within MPMX19_02856 at 99.998 kb on - strand, within MPMX19_02856 at 99.998 kb on - strand, within MPMX19_02856 at 99.998 kb on - strand, within MPMX19_02856 at 99.998 kb on - strand, within MPMX19_02856 at 99.998 kb on - strand, within MPMX19_02856 at 99.998 kb on - strand, within MPMX19_02856 at 100.048 kb on + strand, within MPMX19_02856 at 100.048 kb on + strand, within MPMX19_02856 at 100.048 kb on + strand, within MPMX19_02856 at 100.048 kb on + strand, within MPMX19_02856 at 100.048 kb on + strand, within MPMX19_02856 at 100.048 kb on + strand, within MPMX19_02856 at 100.048 kb on + strand, within MPMX19_02856 at 100.048 kb on + strand, within MPMX19_02856 at 100.048 kb on + strand, within MPMX19_02856 at 100.048 kb on + strand, within MPMX19_02856 at 100.048 kb on + strand, within MPMX19_02856 at 100.049 kb on - strand, within MPMX19_02856 at 100.049 kb on - strand, within MPMX19_02856 at 100.049 kb on - strand, within MPMX19_02856 at 100.049 kb on - strand, within MPMX19_02856 at 100.049 kb on - strand, within MPMX19_02856 at 100.049 kb on - strand, within MPMX19_02856 at 100.049 kb on - strand, within MPMX19_02856 at 100.049 kb on - strand, within MPMX19_02856 at 100.049 kb on - strand, within MPMX19_02856 at 100.085 kb on - strand, within MPMX19_02856
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 97,524 + MPMX19_02854 0.44 +1.6 97,525 - MPMX19_02854 0.44 -2.1 97,635 + MPMX19_02854 0.50 -1.9 97,635 + MPMX19_02854 0.50 +0.6 97,635 + MPMX19_02854 0.50 -2.1 97,635 + MPMX19_02854 0.50 -0.7 97,635 + MPMX19_02854 0.50 -1.4 97,635 + MPMX19_02854 0.50 +1.5 97,635 + MPMX19_02854 0.50 +0.6 97,635 + MPMX19_02854 0.50 -1.6 97,635 + MPMX19_02854 0.50 -0.1 97,635 + MPMX19_02854 0.50 -0.8 97,635 + MPMX19_02854 0.50 +0.6 97,635 + MPMX19_02854 0.50 -0.5 97,635 + MPMX19_02854 0.50 +0.1 97,635 + MPMX19_02854 0.50 -0.4 97,636 - MPMX19_02854 0.50 -0.1 97,636 - MPMX19_02854 0.50 -0.7 97,636 - MPMX19_02854 0.50 -0.4 97,636 - MPMX19_02854 0.50 -0.8 97,636 - MPMX19_02854 0.50 -0.6 97,636 - MPMX19_02854 0.50 -0.5 97,636 - MPMX19_02854 0.50 -0.6 97,636 - MPMX19_02854 0.50 -0.2 97,768 - MPMX19_02854 0.58 -1.9 97,768 - MPMX19_02854 0.58 +0.4 97,768 - MPMX19_02854 0.58 +0.1 97,768 - MPMX19_02854 0.58 +3.9 97,782 + MPMX19_02854 0.59 +0.1 97,782 + MPMX19_02854 0.59 +0.6 97,782 + MPMX19_02854 0.59 +0.1 97,783 - MPMX19_02854 0.59 +0.1 97,783 - MPMX19_02854 0.59 -2.5 97,783 - MPMX19_02854 0.59 -0.3 97,783 - MPMX19_02854 0.59 -0.9 97,842 + MPMX19_02854 0.62 -0.4 97,842 + MPMX19_02854 0.62 +0.0 97,842 + MPMX19_02854 0.62 -0.7 97,842 + MPMX19_02854 0.62 +1.3 97,843 - MPMX19_02854 0.62 -1.1 97,843 - MPMX19_02854 0.62 -0.0 97,843 - MPMX19_02854 0.62 -1.9 97,884 + MPMX19_02854 0.64 -0.5 97,884 + MPMX19_02854 0.64 +0.2 97,884 + MPMX19_02854 0.64 -0.9 97,884 + MPMX19_02854 0.64 -1.6 97,884 + MPMX19_02854 0.64 +0.1 97,884 + MPMX19_02854 0.64 -0.8 97,884 + MPMX19_02854 0.64 -1.4 97,884 + MPMX19_02854 0.64 -0.4 97,884 + MPMX19_02854 0.64 +0.2 97,885 - MPMX19_02854 0.64 -1.9 97,885 - MPMX19_02854 0.64 +0.1 97,885 - MPMX19_02854 0.64 +0.0 97,885 - MPMX19_02854 0.64 -0.7 97,885 - MPMX19_02854 0.64 -0.7 97,885 - MPMX19_02854 0.64 -1.4 97,885 - MPMX19_02854 0.64 -0.3 97,885 - MPMX19_02854 0.64 -0.4 97,885 - MPMX19_02854 0.64 +0.6 97,926 + MPMX19_02854 0.67 +0.9 97,927 - MPMX19_02854 0.67 +0.1 98,043 + MPMX19_02854 0.73 +0.1 98,043 + MPMX19_02854 0.73 -0.6 98,043 + MPMX19_02854 0.73 -0.2 98,058 + MPMX19_02854 0.74 -1.3 98,058 + MPMX19_02854 0.74 +0.4 98,059 - MPMX19_02854 0.74 +0.2 98,059 - MPMX19_02854 0.74 -0.9 98,059 - MPMX19_02854 0.74 -0.3 98,059 - MPMX19_02854 0.74 +1.3 98,061 + MPMX19_02854 0.74 -1.9 98,079 + MPMX19_02854 0.75 -1.4 98,079 + MPMX19_02854 0.75 -0.9 98,079 + MPMX19_02854 0.75 -1.0 98,079 + MPMX19_02854 0.75 -0.3 98,079 + MPMX19_02854 0.75 -0.6 98,079 + MPMX19_02854 0.75 -2.1 98,079 + MPMX19_02854 0.75 +0.1 98,079 + MPMX19_02854 0.75 +0.3 98,079 + MPMX19_02854 0.75 -0.6 98,079 + MPMX19_02854 0.75 -0.1 98,079 + MPMX19_02854 0.75 +0.9 98,079 + MPMX19_02854 0.75 +0.6 98,080 - MPMX19_02854 0.75 -0.1 98,080 - MPMX19_02854 0.75 -0.7 98,080 - MPMX19_02854 0.75 -1.3 98,080 - MPMX19_02854 0.75 -0.4 98,080 - MPMX19_02854 0.75 -1.3 98,080 - MPMX19_02854 0.75 -1.1 98,080 - MPMX19_02854 0.75 -0.2 98,080 - MPMX19_02854 0.75 -0.8 98,080 - MPMX19_02854 0.75 +0.3 98,080 - MPMX19_02854 0.75 -0.1 98,080 - MPMX19_02854 0.75 +0.3 98,080 - MPMX19_02854 0.75 +0.5 98,080 - MPMX19_02854 0.75 +0.3 98,118 - MPMX19_02854 0.78 -1.9 98,340 + +1.1 98,341 - -1.5 98,341 - +0.9 98,341 - -0.5 98,341 - -0.6 98,361 + -0.8 98,361 + -0.9 98,574 + -0.1 98,574 + -1.1 98,574 + +0.1 98,574 + -0.9 98,574 + -0.7 98,574 + +1.1 98,575 - +0.4 98,614 - MPMX19_02855 0.12 -0.9 98,877 + MPMX19_02855 0.46 -2.5 98,949 + MPMX19_02855 0.55 -1.6 98,949 + MPMX19_02855 0.55 -1.4 98,949 + MPMX19_02855 0.55 -0.2 98,949 + MPMX19_02855 0.55 +0.6 98,949 + MPMX19_02855 0.55 -1.1 98,949 + MPMX19_02855 0.55 -2.2 98,949 + MPMX19_02855 0.55 -2.4 98,949 + MPMX19_02855 0.55 -0.7 98,949 + MPMX19_02855 0.55 -1.6 98,949 + MPMX19_02855 0.55 +0.1 98,950 - MPMX19_02855 0.55 -0.7 98,950 - MPMX19_02855 0.55 +0.9 98,950 - MPMX19_02855 0.55 -2.4 98,950 - MPMX19_02855 0.55 -1.1 98,970 + MPMX19_02855 0.58 +0.1 98,970 + MPMX19_02855 0.58 +0.9 98,971 - MPMX19_02855 0.58 -1.1 99,100 - MPMX19_02855 0.74 +0.3 99,396 + -0.4 99,396 + -0.7 99,396 + +0.4 99,396 + -0.2 99,397 - -1.3 99,397 - -1.0 99,397 - +0.2 99,397 - +1.3 99,476 - -0.9 99,476 - -1.8 99,476 - -0.9 99,513 + -0.6 99,514 - -2.2 99,514 - -0.7 99,514 - -0.3 99,603 + -0.4 99,610 + -1.4 99,611 - +0.1 99,758 - MPMX19_02856 0.13 -1.2 99,758 - MPMX19_02856 0.13 +0.1 99,758 - MPMX19_02856 0.13 -0.2 99,758 - MPMX19_02856 0.13 +0.6 99,758 - MPMX19_02856 0.13 -0.2 99,758 - MPMX19_02856 0.13 +1.0 99,895 + MPMX19_02856 0.21 -1.1 99,895 + MPMX19_02856 0.21 +1.0 99,895 + MPMX19_02856 0.21 +1.2 99,895 + MPMX19_02856 0.21 +0.0 99,896 - MPMX19_02856 0.21 +0.7 99,896 - MPMX19_02856 0.21 +0.3 99,896 - MPMX19_02856 0.21 -0.2 99,896 - MPMX19_02856 0.21 +0.9 99,896 - MPMX19_02856 0.21 -1.1 99,896 - MPMX19_02856 0.21 -0.5 99,922 + MPMX19_02856 0.23 -0.4 99,922 + MPMX19_02856 0.23 -0.4 99,931 + MPMX19_02856 0.23 -2.1 99,931 + MPMX19_02856 0.23 +0.3 99,931 + MPMX19_02856 0.23 -0.8 99,932 - MPMX19_02856 0.23 -0.3 99,932 - MPMX19_02856 0.23 -1.1 99,991 + MPMX19_02856 0.27 -2.6 99,991 + MPMX19_02856 0.27 -1.0 99,992 - MPMX19_02856 0.27 +0.3 99,992 - MPMX19_02856 0.27 +0.0 99,992 - MPMX19_02856 0.27 +0.8 99,997 + MPMX19_02856 0.27 -0.5 99,997 + MPMX19_02856 0.27 +0.4 99,997 + MPMX19_02856 0.27 -1.7 99,997 + MPMX19_02856 0.27 +1.9 99,997 + MPMX19_02856 0.27 -2.1 99,997 + MPMX19_02856 0.27 -1.0 99,997 + MPMX19_02856 0.27 -1.3 99,997 + MPMX19_02856 0.27 -0.0 99,997 + MPMX19_02856 0.27 -0.1 99,997 + MPMX19_02856 0.27 +0.3 99,997 + MPMX19_02856 0.27 -1.1 99,998 - MPMX19_02856 0.27 -2.1 99,998 - MPMX19_02856 0.27 -0.9 99,998 - MPMX19_02856 0.27 -1.1 99,998 - MPMX19_02856 0.27 -1.6 99,998 - MPMX19_02856 0.27 -0.0 99,998 - MPMX19_02856 0.27 -0.1 99,998 - MPMX19_02856 0.27 +1.1 99,998 - MPMX19_02856 0.27 -0.3 99,998 - MPMX19_02856 0.27 -1.7 100,048 + MPMX19_02856 0.30 +1.3 100,048 + MPMX19_02856 0.30 +0.7 100,048 + MPMX19_02856 0.30 -0.2 100,048 + MPMX19_02856 0.30 -0.4 100,048 + MPMX19_02856 0.30 -1.4 100,048 + MPMX19_02856 0.30 -1.1 100,048 + MPMX19_02856 0.30 +0.3 100,048 + MPMX19_02856 0.30 +0.4 100,048 + MPMX19_02856 0.30 -0.3 100,048 + MPMX19_02856 0.30 +0.3 100,048 + MPMX19_02856 0.30 -0.6 100,049 - MPMX19_02856 0.30 +0.5 100,049 - MPMX19_02856 0.30 -2.0 100,049 - MPMX19_02856 0.30 +0.6 100,049 - MPMX19_02856 0.30 +0.6 100,049 - MPMX19_02856 0.30 -0.6 100,049 - MPMX19_02856 0.30 -0.6 100,049 - MPMX19_02856 0.30 -0.8 100,049 - MPMX19_02856 0.30 -1.1 100,049 - MPMX19_02856 0.30 -0.1 100,085 - MPMX19_02856 0.32 -0.7
Or see this region's nucleotide sequence