Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02842 and MPMX19_02843 are separated by 182 nucleotides MPMX19_02843 and MPMX19_02844 are separated by 250 nucleotides
MPMX19_02842: MPMX19_02842 - HTH-type transcriptional repressor RspR, at 82,740 to 83,450
_02842
MPMX19_02843: MPMX19_02843 - hypothetical protein, at 83,633 to 85,312
_02843
MPMX19_02844: MPMX19_02844 - putative formate transporter 1, at 85,563 to 86,444
_02844
Position (kb) 83
84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 82.713 kb on + strand at 82.743 kb on + strand at 82.744 kb on - strand at 83.082 kb on + strand, within MPMX19_02842 at 83.082 kb on + strand, within MPMX19_02842 at 83.082 kb on + strand, within MPMX19_02842 at 83.082 kb on + strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.169 kb on + strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.206 kb on - strand, within MPMX19_02842 at 83.206 kb on - strand, within MPMX19_02842 at 83.206 kb on - strand, within MPMX19_02842 at 83.213 kb on + strand, within MPMX19_02842 at 83.393 kb on + strand at 83.393 kb on + strand at 83.394 kb on - strand at 83.424 kb on + strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.506 kb on + strand at 83.507 kb on - strand at 83.507 kb on - strand at 83.587 kb on + strand at 83.587 kb on + strand at 83.588 kb on - strand at 83.681 kb on - strand at 83.858 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.107 kb on + strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.108 kb on - strand, within MPMX19_02843 at 84.209 kb on + strand, within MPMX19_02843 at 84.210 kb on - strand, within MPMX19_02843 at 84.242 kb on + strand, within MPMX19_02843 at 84.242 kb on + strand, within MPMX19_02843 at 84.242 kb on + strand, within MPMX19_02843 at 84.243 kb on - strand, within MPMX19_02843 at 84.243 kb on - strand, within MPMX19_02843 at 84.243 kb on - strand, within MPMX19_02843 at 84.243 kb on - strand, within MPMX19_02843 at 84.335 kb on + strand, within MPMX19_02843 at 84.335 kb on + strand, within MPMX19_02843 at 84.335 kb on + strand, within MPMX19_02843 at 84.336 kb on - strand, within MPMX19_02843 at 84.494 kb on + strand, within MPMX19_02843 at 84.494 kb on + strand, within MPMX19_02843 at 84.495 kb on - strand, within MPMX19_02843 at 84.495 kb on - strand, within MPMX19_02843 at 84.495 kb on - strand, within MPMX19_02843 at 84.495 kb on - strand, within MPMX19_02843 at 84.495 kb on - strand, within MPMX19_02843 at 84.495 kb on - strand, within MPMX19_02843 at 84.495 kb on - strand, within MPMX19_02843 at 84.495 kb on - strand, within MPMX19_02843 at 84.515 kb on + strand, within MPMX19_02843 at 84.515 kb on + strand, within MPMX19_02843 at 84.516 kb on - strand, within MPMX19_02843 at 84.516 kb on - strand, within MPMX19_02843 at 84.516 kb on - strand, within MPMX19_02843 at 84.516 kb on - strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.720 kb on + strand, within MPMX19_02843 at 84.721 kb on - strand, within MPMX19_02843 at 84.721 kb on - strand, within MPMX19_02843 at 84.721 kb on - strand, within MPMX19_02843 at 84.721 kb on - strand, within MPMX19_02843 at 84.721 kb on - strand, within MPMX19_02843 at 84.721 kb on - strand, within MPMX19_02843 at 84.721 kb on - strand, within MPMX19_02843 at 84.721 kb on - strand, within MPMX19_02843 at 84.721 kb on - strand, within MPMX19_02843 at 84.721 kb on - strand, within MPMX19_02843 at 84.721 kb on - strand, within MPMX19_02843 at 84.721 kb on - strand, within MPMX19_02843 at 85.200 kb on - strand at 85.334 kb on + strand at 85.334 kb on + strand at 85.334 kb on + strand at 85.334 kb on + strand at 85.334 kb on + strand at 85.335 kb on - strand at 85.335 kb on - strand at 85.335 kb on - strand at 85.335 kb on - strand at 85.344 kb on - strand at 85.385 kb on + strand at 85.429 kb on + strand at 85.430 kb on - strand at 85.485 kb on + strand at 85.485 kb on + strand at 85.486 kb on - strand at 85.486 kb on - strand at 85.489 kb on + strand at 85.489 kb on + strand at 85.489 kb on + strand at 85.489 kb on + strand at 85.490 kb on - strand at 85.490 kb on - strand at 85.490 kb on - strand at 85.490 kb on - strand at 85.490 kb on - strand at 85.492 kb on + strand at 85.492 kb on + strand at 85.498 kb on + strand at 85.499 kb on - strand at 85.683 kb on + strand, within MPMX19_02844 at 85.683 kb on + strand, within MPMX19_02844 at 85.683 kb on + strand, within MPMX19_02844 at 85.684 kb on - strand, within MPMX19_02844 at 85.791 kb on + strand, within MPMX19_02844 at 85.792 kb on - strand, within MPMX19_02844 at 86.013 kb on + strand, within MPMX19_02844 at 86.013 kb on + strand, within MPMX19_02844 at 86.013 kb on + strand, within MPMX19_02844 at 86.013 kb on + strand, within MPMX19_02844 at 86.013 kb on + strand, within MPMX19_02844 at 86.013 kb on + strand, within MPMX19_02844 at 86.013 kb on + strand, within MPMX19_02844 at 86.013 kb on + strand, within MPMX19_02844 at 86.013 kb on + strand, within MPMX19_02844 at 86.013 kb on + strand, within MPMX19_02844 at 86.014 kb on - strand, within MPMX19_02844 at 86.014 kb on - strand, within MPMX19_02844 at 86.014 kb on - strand, within MPMX19_02844 at 86.014 kb on - strand, within MPMX19_02844 at 86.014 kb on - strand, within MPMX19_02844 at 86.014 kb on - strand, within MPMX19_02844 at 86.052 kb on + strand, within MPMX19_02844 at 86.052 kb on + strand, within MPMX19_02844 at 86.053 kb on - strand, within MPMX19_02844 at 86.244 kb on + strand, within MPMX19_02844 at 86.244 kb on + strand, within MPMX19_02844 at 86.244 kb on + strand, within MPMX19_02844 at 86.244 kb on + strand, within MPMX19_02844 at 86.244 kb on + strand, within MPMX19_02844 at 86.244 kb on + strand, within MPMX19_02844 at 86.244 kb on + strand, within MPMX19_02844 at 86.244 kb on + strand, within MPMX19_02844 at 86.244 kb on + strand, within MPMX19_02844 at 86.245 kb on - strand, within MPMX19_02844 at 86.245 kb on - strand, within MPMX19_02844 at 86.245 kb on - strand, within MPMX19_02844 at 86.245 kb on - strand, within MPMX19_02844 at 86.245 kb on - strand, within MPMX19_02844
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 82,713 + -1.1 82,743 + -0.5 82,744 - +0.2 83,082 + MPMX19_02842 0.48 +0.1 83,082 + MPMX19_02842 0.48 -0.5 83,082 + MPMX19_02842 0.48 -0.1 83,082 + MPMX19_02842 0.48 -0.8 83,083 - MPMX19_02842 0.48 +0.4 83,083 - MPMX19_02842 0.48 -1.7 83,083 - MPMX19_02842 0.48 -0.5 83,083 - MPMX19_02842 0.48 -0.4 83,169 + MPMX19_02842 0.60 -0.7 83,170 - MPMX19_02842 0.60 -1.9 83,170 - MPMX19_02842 0.60 -0.6 83,170 - MPMX19_02842 0.60 -1.0 83,170 - MPMX19_02842 0.60 -0.9 83,170 - MPMX19_02842 0.60 -1.3 83,205 + MPMX19_02842 0.65 -0.1 83,205 + MPMX19_02842 0.65 -0.6 83,205 + MPMX19_02842 0.65 +1.1 83,205 + MPMX19_02842 0.65 +1.3 83,205 + MPMX19_02842 0.65 -0.8 83,206 - MPMX19_02842 0.66 -1.1 83,206 - MPMX19_02842 0.66 -0.9 83,206 - MPMX19_02842 0.66 -0.4 83,213 + MPMX19_02842 0.67 -1.3 83,393 + -2.4 83,393 + -0.7 83,394 - +0.5 83,424 + -1.6 83,425 - -1.0 83,425 - -0.8 83,506 + -1.1 83,507 - -0.4 83,507 - -1.0 83,587 + -1.0 83,587 + +1.7 83,588 - +0.1 83,681 - -0.7 83,858 + MPMX19_02843 0.13 -0.0 84,107 + MPMX19_02843 0.28 -0.3 84,107 + MPMX19_02843 0.28 -1.3 84,107 + MPMX19_02843 0.28 -0.4 84,107 + MPMX19_02843 0.28 -1.0 84,107 + MPMX19_02843 0.28 +1.9 84,107 + MPMX19_02843 0.28 -1.4 84,107 + MPMX19_02843 0.28 +0.3 84,108 - MPMX19_02843 0.28 -0.4 84,108 - MPMX19_02843 0.28 -0.1 84,108 - MPMX19_02843 0.28 +1.5 84,108 - MPMX19_02843 0.28 -0.8 84,108 - MPMX19_02843 0.28 +1.3 84,108 - MPMX19_02843 0.28 +0.7 84,108 - MPMX19_02843 0.28 -1.1 84,108 - MPMX19_02843 0.28 +0.1 84,108 - MPMX19_02843 0.28 +0.4 84,108 - MPMX19_02843 0.28 -0.9 84,108 - MPMX19_02843 0.28 +1.5 84,209 + MPMX19_02843 0.34 -1.0 84,210 - MPMX19_02843 0.34 +0.1 84,242 + MPMX19_02843 0.36 -0.2 84,242 + MPMX19_02843 0.36 -0.1 84,242 + MPMX19_02843 0.36 -0.6 84,243 - MPMX19_02843 0.36 -0.4 84,243 - MPMX19_02843 0.36 -0.3 84,243 - MPMX19_02843 0.36 +0.3 84,243 - MPMX19_02843 0.36 -2.2 84,335 + MPMX19_02843 0.42 +0.5 84,335 + MPMX19_02843 0.42 +0.7 84,335 + MPMX19_02843 0.42 -0.6 84,336 - MPMX19_02843 0.42 +0.3 84,494 + MPMX19_02843 0.51 -2.2 84,494 + MPMX19_02843 0.51 -1.4 84,495 - MPMX19_02843 0.51 +0.8 84,495 - MPMX19_02843 0.51 +0.2 84,495 - MPMX19_02843 0.51 -0.3 84,495 - MPMX19_02843 0.51 -0.0 84,495 - MPMX19_02843 0.51 +0.1 84,495 - MPMX19_02843 0.51 +0.8 84,495 - MPMX19_02843 0.51 +0.9 84,495 - MPMX19_02843 0.51 -1.3 84,515 + MPMX19_02843 0.53 +0.9 84,515 + MPMX19_02843 0.53 -0.2 84,516 - MPMX19_02843 0.53 -0.7 84,516 - MPMX19_02843 0.53 -0.4 84,516 - MPMX19_02843 0.53 -0.2 84,516 - MPMX19_02843 0.53 +0.1 84,720 + MPMX19_02843 0.65 -1.0 84,720 + MPMX19_02843 0.65 +0.7 84,720 + MPMX19_02843 0.65 -0.0 84,720 + MPMX19_02843 0.65 -1.1 84,720 + MPMX19_02843 0.65 -1.3 84,720 + MPMX19_02843 0.65 -0.7 84,720 + MPMX19_02843 0.65 +1.0 84,720 + MPMX19_02843 0.65 +0.2 84,720 + MPMX19_02843 0.65 -1.1 84,720 + MPMX19_02843 0.65 -0.3 84,720 + MPMX19_02843 0.65 -1.1 84,720 + MPMX19_02843 0.65 -0.4 84,720 + MPMX19_02843 0.65 +1.3 84,720 + MPMX19_02843 0.65 +0.5 84,720 + MPMX19_02843 0.65 -0.1 84,720 + MPMX19_02843 0.65 +0.3 84,720 + MPMX19_02843 0.65 +0.1 84,720 + MPMX19_02843 0.65 +0.1 84,720 + MPMX19_02843 0.65 -0.9 84,720 + MPMX19_02843 0.65 -0.8 84,720 + MPMX19_02843 0.65 +0.7 84,721 - MPMX19_02843 0.65 +0.3 84,721 - MPMX19_02843 0.65 -0.1 84,721 - MPMX19_02843 0.65 -1.3 84,721 - MPMX19_02843 0.65 -1.6 84,721 - MPMX19_02843 0.65 -0.7 84,721 - MPMX19_02843 0.65 -1.0 84,721 - MPMX19_02843 0.65 -0.2 84,721 - MPMX19_02843 0.65 +1.2 84,721 - MPMX19_02843 0.65 -0.1 84,721 - MPMX19_02843 0.65 -1.1 84,721 - MPMX19_02843 0.65 -1.4 84,721 - MPMX19_02843 0.65 +0.1 85,200 - -0.2 85,334 + -1.4 85,334 + -0.3 85,334 + -1.3 85,334 + -0.6 85,334 + +0.7 85,335 - +0.1 85,335 - -0.2 85,335 - +0.3 85,335 - +0.7 85,344 - +0.9 85,385 + -0.3 85,429 + -0.1 85,430 - -0.8 85,485 + -0.7 85,485 + -0.0 85,486 - +0.7 85,486 - -0.5 85,489 + -0.6 85,489 + +0.6 85,489 + -0.3 85,489 + -0.3 85,490 - +0.3 85,490 - -1.4 85,490 - -1.3 85,490 - +0.1 85,490 - -1.4 85,492 + -1.3 85,492 + +1.1 85,498 + -0.4 85,499 - -0.6 85,683 + MPMX19_02844 0.14 -1.1 85,683 + MPMX19_02844 0.14 -1.7 85,683 + MPMX19_02844 0.14 -0.7 85,684 - MPMX19_02844 0.14 -0.9 85,791 + MPMX19_02844 0.26 +0.7 85,792 - MPMX19_02844 0.26 -0.7 86,013 + MPMX19_02844 0.51 -0.9 86,013 + MPMX19_02844 0.51 +0.0 86,013 + MPMX19_02844 0.51 -0.1 86,013 + MPMX19_02844 0.51 +0.9 86,013 + MPMX19_02844 0.51 +0.9 86,013 + MPMX19_02844 0.51 +0.3 86,013 + MPMX19_02844 0.51 -0.8 86,013 + MPMX19_02844 0.51 -1.3 86,013 + MPMX19_02844 0.51 -1.4 86,013 + MPMX19_02844 0.51 -0.9 86,014 - MPMX19_02844 0.51 -1.4 86,014 - MPMX19_02844 0.51 -0.2 86,014 - MPMX19_02844 0.51 -1.2 86,014 - MPMX19_02844 0.51 +0.4 86,014 - MPMX19_02844 0.51 -0.6 86,014 - MPMX19_02844 0.51 +0.4 86,052 + MPMX19_02844 0.55 -0.6 86,052 + MPMX19_02844 0.55 -1.1 86,053 - MPMX19_02844 0.56 +0.9 86,244 + MPMX19_02844 0.77 +0.3 86,244 + MPMX19_02844 0.77 -2.9 86,244 + MPMX19_02844 0.77 -0.1 86,244 + MPMX19_02844 0.77 -0.1 86,244 + MPMX19_02844 0.77 +0.3 86,244 + MPMX19_02844 0.77 +1.1 86,244 + MPMX19_02844 0.77 +0.1 86,244 + MPMX19_02844 0.77 -1.1 86,244 + MPMX19_02844 0.77 -0.2 86,245 - MPMX19_02844 0.77 +0.3 86,245 - MPMX19_02844 0.77 +0.8 86,245 - MPMX19_02844 0.77 +0.2 86,245 - MPMX19_02844 0.77 -0.9 86,245 - MPMX19_02844 0.77 +0.3
Or see this region's nucleotide sequence