Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02278

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
2,396,438	+		MPMX19_02277	0.27	-1.6
2,396,438	+		MPMX19_02277	0.27	-1.0
2,396,439	-		MPMX19_02277	0.27	-1.7
2,396,439	-		MPMX19_02277	0.27	-0.0
2,396,558	+		MPMX19_02277	0.46	-0.2
2,396,558	+		MPMX19_02277	0.46	-1.6
2,396,559	-		MPMX19_02277	0.47	-3.3
2,396,559	-		MPMX19_02277	0.47	-0.0
2,396,559	-		MPMX19_02277	0.47	-1.8
2,396,559	-		MPMX19_02277	0.47	-1.1
2,396,559	-		MPMX19_02277	0.47	+0.1
2,396,559	-		MPMX19_02277	0.47	-2.5
2,396,605	+		MPMX19_02277	0.54	+1.0
2,396,605	+		MPMX19_02277	0.54	-1.0
2,396,633	+		MPMX19_02277	0.58	-1.2
2,396,633	+		MPMX19_02277	0.58	-0.5
2,396,633	+		MPMX19_02277	0.58	-0.4
2,396,633	+		MPMX19_02277	0.58	-1.6
2,396,633	+		MPMX19_02277	0.58	-1.2
2,396,633	+		MPMX19_02277	0.58	+0.0
2,396,633	+		MPMX19_02277	0.58	+0.7
2,396,633	+		MPMX19_02277	0.58	-0.4
2,396,633	+		MPMX19_02277	0.58	-0.6
2,396,633	+		MPMX19_02277	0.58	-0.8
2,396,633	+		MPMX19_02277	0.58	+0.4
2,396,633	+		MPMX19_02277	0.58	-0.6
2,396,633	+		MPMX19_02277	0.58	-0.9
2,396,634	-		MPMX19_02277	0.58	+0.1
2,396,634	-		MPMX19_02277	0.58	-0.4
2,396,634	-		MPMX19_02277	0.58	-0.7
2,396,634	-		MPMX19_02277	0.58	+0.2
2,396,634	-		MPMX19_02277	0.58	-0.7
2,396,634	-		MPMX19_02277	0.58	-0.4
2,396,634	-		MPMX19_02277	0.58	+2.0
2,396,634	-		MPMX19_02277	0.58	+0.1
2,396,634	-		MPMX19_02277	0.58	+0.3
2,396,634	-		MPMX19_02277	0.58	-0.5
2,396,634	-		MPMX19_02277	0.58	-0.2
2,396,634	-		MPMX19_02277	0.58	-0.6
2,396,634	-		MPMX19_02277	0.58	-0.2
2,396,664	+		MPMX19_02277	0.63	-0.6
2,396,664	+		MPMX19_02277	0.63	-0.0
2,396,664	+		MPMX19_02277	0.63	-0.9
2,396,664	+		MPMX19_02277	0.63	-1.0
2,396,664	+		MPMX19_02277	0.63	+0.2
2,396,664	+		MPMX19_02277	0.63	+0.6
2,396,664	+		MPMX19_02277	0.63	-0.4
2,396,664	+		MPMX19_02277	0.63	+1.3
2,396,664	+		MPMX19_02277	0.63	+1.2
2,396,664	+		MPMX19_02277	0.63	-0.3
2,396,664	+		MPMX19_02277	0.63	-0.5
2,396,664	+		MPMX19_02277	0.63	-0.4
2,396,664	+		MPMX19_02277	0.63	-1.7
2,396,664	+		MPMX19_02277	0.63	-1.5
2,396,664	+		MPMX19_02277	0.63	+1.0
2,396,665	-		MPMX19_02277	0.63	-2.3
2,396,665	-		MPMX19_02277	0.63	+0.3
2,396,665	-		MPMX19_02277	0.63	-0.0
2,396,665	-		MPMX19_02277	0.63	+0.5
2,396,665	-		MPMX19_02277	0.63	+1.0
2,396,665	-		MPMX19_02277	0.63	+0.1
2,396,665	-		MPMX19_02277	0.63	-0.3
2,396,665	-		MPMX19_02277	0.63	-1.0
2,396,665	-		MPMX19_02277	0.63	-1.7
2,396,665	-		MPMX19_02277	0.63	-0.2
2,396,665	-		MPMX19_02277	0.63	-0.0
2,396,665	-		MPMX19_02277	0.63	+0.6
2,396,687	+		MPMX19_02277	0.67	-0.5
2,396,687	+		MPMX19_02277	0.67	-1.7
2,396,688	-		MPMX19_02277	0.67	-1.4
2,396,688	-		MPMX19_02277	0.67	-1.6
2,396,694	+		MPMX19_02277	0.68	-1.0
2,396,694	+		MPMX19_02277	0.68	-0.6
2,396,694	+		MPMX19_02277	0.68	-0.0
2,396,694	+		MPMX19_02277	0.68	-0.6
2,396,694	+		MPMX19_02277	0.68	+1.5
2,396,694	+		MPMX19_02277	0.68	-1.2
2,396,695	-		MPMX19_02277	0.68	-0.9
2,396,695	-		MPMX19_02277	0.68	+0.5
2,396,695	-		MPMX19_02277	0.68	-1.0
2,396,695	-		MPMX19_02277	0.68	-0.0
2,396,695	-		MPMX19_02277	0.68	+1.1
2,396,695	-		MPMX19_02277	0.68	-1.0
2,396,695	-		MPMX19_02277	0.68	-1.0
2,396,697	+		MPMX19_02277	0.68	-0.1
2,396,697	+		MPMX19_02277	0.68	-0.7
2,396,697	+		MPMX19_02277	0.68	+0.1
2,396,697	+		MPMX19_02277	0.68	-1.2
2,396,697	+		MPMX19_02277	0.68	-0.6
2,396,697	+		MPMX19_02277	0.68	-0.3
2,396,697	+		MPMX19_02277	0.68	-1.5
2,396,697	+		MPMX19_02277	0.68	-2.0
2,396,697	+		MPMX19_02277	0.68	-0.6
2,396,697	+		MPMX19_02277	0.68	+0.1
2,396,697	+		MPMX19_02277	0.68	-1.5
2,396,697	+		MPMX19_02277	0.68	-0.5
2,396,697	+		MPMX19_02277	0.68	-1.7
2,396,697	+		MPMX19_02277	0.68	+0.4
2,396,698	-		MPMX19_02277	0.69	-1.4
2,396,698	-		MPMX19_02277	0.69	+0.6
2,396,698	-		MPMX19_02277	0.69	-0.7
2,396,698	-		MPMX19_02277	0.69	-2.7
2,396,698	-		MPMX19_02277	0.69	+2.0
2,396,698	-		MPMX19_02277	0.69	-0.9
2,396,698	-		MPMX19_02277	0.69	-0.8
2,396,698	-		MPMX19_02277	0.69	-0.9
2,396,698	-		MPMX19_02277	0.69	+0.3
2,396,698	-		MPMX19_02277	0.69	-0.0
2,396,698	-		MPMX19_02277	0.69	-1.4
2,396,698	-		MPMX19_02277	0.69	-0.0
2,396,698	-		MPMX19_02277	0.69	-0.7
2,396,856	-				+0.4
2,396,868	+				-0.5
2,396,868	+				-0.6
2,396,868	+				-0.5
2,396,869	-				-1.6
2,396,869	-				+0.2
2,396,869	-				-0.3
2,396,869	-				+0.8
2,396,882	+				-0.5
2,396,882	+				+0.2
2,396,882	+				-0.5
2,396,882	+				+0.0
2,396,882	+				-1.0
2,396,882	+				+0.1
2,396,882	+				-1.2
2,396,882	+				-0.6
2,396,883	-				-0.4
2,396,883	-				+1.7
2,396,883	-				-1.4
2,396,883	-				-0.1
2,396,883	-				-0.9
2,396,883	-				-0.0
2,396,883	-				+0.3
2,396,883	-				+0.4
2,396,883	-				-1.0
2,396,883	-				+0.1
2,396,936	+				-1.4
2,396,936	+				-0.6
2,396,936	+				-0.5
2,396,936	+				-0.7
2,396,936	+				+0.6
2,396,936	+				+0.6
2,396,936	+				+0.1
2,396,936	+				-1.7
2,396,936	+				-0.9
2,396,936	+				+0.8
2,396,936	+				+0.2
2,396,936	+				-1.2
2,396,936	+				-1.1
2,396,936	+				+1.4
2,396,936	+				-0.3
2,396,936	+				+0.6
2,396,936	+				+2.0
2,396,936	+				+2.0
2,396,936	+				-0.5
2,396,936	+				-1.0
2,396,936	+				-1.4
2,396,936	+				+0.8
2,396,936	+				+1.1
2,396,936	+				-2.1
2,396,936	+				-2.4
2,396,936	+				-0.2
2,396,936	+				+0.4
2,396,936	+				+0.1
2,396,936	+				-1.9
2,396,936	-				-0.6
2,396,937	-				-0.2
2,396,937	-				-2.4
2,396,937	-				-0.0
2,396,937	-				-0.7
2,396,937	-				-1.5
2,396,937	-				+1.2
2,396,937	-				-0.6
2,396,937	-				-1.4
2,396,937	-				+0.8
2,396,937	-				-1.0
2,396,937	-				+0.2
2,396,937	-				+0.7
2,396,937	-				+1.5
2,396,937	-				-0.5
2,396,937	-				+0.7
2,396,937	-				-0.5
2,396,937	-				-0.6
2,396,937	-				-2.1
2,396,937	-				-0.6
2,396,937	-				+0.0
2,396,937	-				-0.8
2,396,937	-				-1.5
2,396,937	-				-0.9
2,396,937	-				-0.9
2,396,937	-				-1.9
2,396,937	-				-0.4
2,396,937	-				+0.2
2,396,937	-				-0.8
2,396,937	-				-1.0
2,396,937	-				-0.0
2,396,976	-				-0.5
2,396,995	+				+0.1
2,396,995	+				-0.1
2,396,996	-				-0.6
2,397,100	-				+1.0
2,397,169	+				-0.9
2,397,170	-				+0.3
2,397,216	+				+0.6
2,397,216	+				+1.0
2,397,216	+				-2.2
2,397,216	+				-0.6
2,397,216	+				-0.8
2,397,216	+				+0.1
2,397,216	+				+0.4
2,397,216	+				+0.4
2,397,216	+				-1.0
2,397,216	+				-0.5
2,397,216	+				-0.5
2,397,216	+				+0.1
2,397,216	+				+0.1
2,397,216	+				+0.2
2,397,216	+				+0.5
2,397,216	+				+1.0
2,397,217	-				-1.6
2,397,217	-				-0.0
2,397,217	-				-1.2
2,397,217	-				-1.1
2,397,217	-				+0.4
2,397,217	-				-0.4
2,397,217	-				-1.9
2,397,217	-				-0.0
2,397,217	-				+0.7
2,397,217	-				+0.3
2,397,217	-				-0.5
2,397,217	-				+0.1
2,397,217	-				-0.1
2,397,217	-				-0.4
2,397,217	-				-1.3
2,397,217	-				-1.0
2,397,217	-				-1.7
2,397,217	-				-0.8
2,397,217	-				-2.1
2,397,217	-				-0.6
2,397,293	-		MPMX19_02278	0.14	+0.6
2,397,293	-		MPMX19_02278	0.14	+0.8
2,397,293	-		MPMX19_02278	0.14	-1.0
2,397,298	-		MPMX19_02278	0.16	-0.9
2,397,298	-		MPMX19_02278	0.16	+1.0
2,397,298	-		MPMX19_02278	0.16	+1.0
2,397,386	+		MPMX19_02278	0.52	-1.4
2,397,386	+		MPMX19_02278	0.52	-0.9
2,397,386	+		MPMX19_02278	0.52	+1.0
2,397,387	-		MPMX19_02278	0.52	-0.3
2,397,387	-		MPMX19_02278	0.52	-0.1
2,397,387	-		MPMX19_02278	0.52	+0.1
2,397,387	-		MPMX19_02278	0.52	-0.6
2,397,387	-		MPMX19_02278	0.52	-0.3
2,397,387	-		MPMX19_02278	0.52	+0.8
2,397,387	-		MPMX19_02278	0.52	-0.9
2,397,387	-		MPMX19_02278	0.52	-0.4
2,397,432	+		MPMX19_02278	0.70	-0.6
2,397,432	+		MPMX19_02278	0.70	-0.6
2,397,432	+		MPMX19_02278	0.70	-1.5
2,397,433	-		MPMX19_02278	0.71	+1.4
2,397,433	-		MPMX19_02278	0.71	-1.5
2,397,435	+		MPMX19_02278	0.71	+0.4
2,397,435	+		MPMX19_02278	0.71	-0.2
2,397,435	+		MPMX19_02278	0.71	+0.4
2,397,435	+		MPMX19_02278	0.71	+0.5
2,397,435	+		MPMX19_02278	0.71	-2.3
2,397,435	+		MPMX19_02278	0.71	-1.7
2,397,435	+		MPMX19_02278	0.71	-1.5
2,397,435	+		MPMX19_02278	0.71	-1.0
2,397,436	-		MPMX19_02278	0.72	-1.1
2,397,436	-		MPMX19_02278	0.72	-0.3
2,397,436	-		MPMX19_02278	0.72	-0.7
2,397,436	-		MPMX19_02278	0.72	-0.1
2,397,436	-		MPMX19_02278	0.72	+0.1
2,397,436	-		MPMX19_02278	0.72	-0.0
2,397,436	-		MPMX19_02278	0.72	-2.0
2,397,436	-		MPMX19_02278	0.72	-1.0
2,397,475	+		MPMX19_02278	0.88	-1.0
2,397,475	+		MPMX19_02278	0.88	-0.6
2,397,475	+		MPMX19_02278	0.88	-1.5
2,397,475	+		MPMX19_02278	0.88	-1.0
2,397,475	+		MPMX19_02278	0.88	-0.5
2,397,476	-		MPMX19_02278	0.88	-0.4
2,397,476	-		MPMX19_02278	0.88	-0.2
2,397,476	-		MPMX19_02278	0.88	+1.0
2,397,476	-		MPMX19_02278	0.88	-0.6
2,397,476	-		MPMX19_02278	0.88	-1.2
2,397,476	-		MPMX19_02278	0.88	-1.5
2,397,521	+				+0.1
2,397,521	+				-0.5
2,397,522	-				-1.4
2,397,522	-				-1.9
2,397,557	+				+1.3
2,397,557	+				-0.2
2,397,557	+				+0.4
2,397,557	+				-1.4
2,397,557	+				-0.4
2,397,557	+				-1.6
2,397,557	+				+0.4
2,397,557	+				-0.6
2,397,557	+				-3.8
2,397,557	+				-1.4
2,397,557	+				+0.2
2,397,557	+				+0.8
2,397,557	+				-1.2
2,397,558	+				+0.8
2,397,558	-				-1.9
2,397,558	-				-1.0
2,397,558	-				-1.0
2,397,558	-				-0.6
2,397,558	-				-0.9
2,397,558	-				-0.9
2,397,558	-				+0.4
2,397,558	-				+0.7
2,397,642	+				-1.0
2,397,642	+				+1.2
2,397,642	+				+1.0
2,397,642	+				-0.3
2,397,642	+				-1.6
2,397,643	-				-0.3
2,397,643	-				+1.0
2,397,643	-				+0.4
2,397,654	+				-1.5
2,397,654	+				+0.4
2,397,654	+				-0.9
2,397,654	+				-0.6
2,397,654	+				-1.0
2,397,654	+				-0.5
2,397,654	+				-0.2
2,397,654	+				+1.2
2,397,654	+				+0.7
2,397,654	+				+0.5
2,397,654	+				-0.5
2,397,655	-				+0.4
2,397,655	-				+0.5
2,397,655	-				-0.7
2,397,655	-				-0.7
2,397,655	-				+2.5
2,397,655	-				-1.0
2,397,692	-		MPMX19_02279	0.14	-0.2
2,397,710	+		MPMX19_02279	0.18	-0.6
2,397,710	+		MPMX19_02279	0.18	-1.2
2,397,710	+		MPMX19_02279	0.18	+0.4
2,397,710	+		MPMX19_02279	0.18	+0.4
2,397,711	-		MPMX19_02279	0.18	-0.0
2,397,711	-		MPMX19_02279	0.18	-1.2
2,397,711	-		MPMX19_02279	0.18	-0.9
2,397,711	-		MPMX19_02279	0.18	+1.1
2,397,711	-		MPMX19_02279	0.18	+0.4
2,398,167	+				-0.3
2,398,167	+				-0.6
2,398,167	+				-1.2
2,398,167	+				-0.5
2,398,167	+				-1.0
2,398,167	+				-1.0
2,398,167	+				-0.3
2,398,167	+				+0.7
2,398,167	+				-0.6
2,398,167	+				+0.4
2,398,167	+				-0.6
2,398,167	+				+0.1
2,398,167	+				+0.2
2,398,167	+				+2.0
2,398,167	+				-0.5
2,398,167	+				-1.2
2,398,167	+				-0.0
2,398,167	+				-1.0
2,398,167	+				-0.0
2,398,167	+				-0.4
2,398,167	+				-0.2
2,398,167	+				-0.0
2,398,167	+				-1.0
2,398,167	+				-0.7
2,398,167	+				-1.2
2,398,167	+				-1.4
2,398,167	+				+0.4
2,398,167	+				-1.0
2,398,167	+				-0.6
2,398,167	+				+0.2
2,398,167	+				-1.4
2,398,167	+				-1.5
2,398,167	+				-0.4
2,398,167	+				+0.1
2,398,167	+				-1.0
2,398,167	+				+0.2
2,398,167	+				-0.3
2,398,167	+				-0.7
2,398,167	+				-2.2
2,398,167	+				-1.2
2,398,167	+				-0.4
2,398,167	+				-0.0
2,398,167	+				-0.0
2,398,167	+				+0.1
2,398,167	+				+1.3
2,398,167	+				-0.4
2,398,167	+				-0.7
2,398,168	-				-0.5
2,398,168	-				-0.3
2,398,168	-				+0.6
2,398,168	-				-0.1
2,398,168	-				-1.0
2,398,168	-				-1.4
2,398,168	-				-1.5
2,398,168	-				-1.3
2,398,168	-				+1.5
2,398,168	-				-0.6
2,398,168	-				-0.1
2,398,168	-				-2.4
2,398,168	-				+0.8
2,398,168	-				+1.1
2,398,168	-				-0.2
2,398,168	-				+0.6
2,398,168	-				+0.4
2,398,168	-				-3.2
2,398,168	-				+0.4
2,398,168	-				-1.5
2,398,168	-				-0.0
2,398,168	-				-1.2
2,398,168	-				+0.1
2,398,168	-				-0.2
2,398,168	-				-0.2
2,398,168	-				-1.6
2,398,168	-				-1.5
2,398,168	-				-2.2
2,398,168	-				-0.6
2,398,168	-				-1.5
2,398,461	-		MPMX19_02280	0.19	-0.6