Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00990

Experiment: NL-CCM; ambient oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00989 and MPMX19_00990 are separated by 149 nucleotidesMPMX19_00990 and MPMX19_00991 are separated by 66 nucleotidesMPMX19_00991 and MPMX19_00992 are separated by 4 nucleotides MPMX19_00989: MPMX19_00989 - 30S ribosomal protein S2, at 1,030,537 to 1,031,319 _00989 MPMX19_00990: MPMX19_00990 - Elongation factor Ts, at 1,031,469 to 1,032,401 _00990 MPMX19_00991: MPMX19_00991 - Uridylate kinase, at 1,032,468 to 1,033,223 _00991 MPMX19_00992: MPMX19_00992 - Ribosome-recycling factor, at 1,033,228 to 1,033,785 _00992 Position (kb) 1031 1032 1033Strain fitness (log2 ratio) -1 0 1 2 3at 1032.422 kb on + strandat 1032.422 kb on + strandat 1032.422 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
remove
1,032,422 + +0.2
1,032,422 + +0.2
1,032,422 + +2.8

Or see this region's nucleotide sequence