Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00893 and MPMX19_00894 are separated by 41 nucleotides MPMX19_00894 and MPMX19_00895 are separated by 243 nucleotides MPMX19_00895 and MPMX19_00896 are separated by 117 nucleotides MPMX19_00896 and MPMX19_00897 are separated by 22 nucleotides
MPMX19_00893: MPMX19_00893 - Anthranilate synthase component 1, at 927,259 to 928,770
_00893
MPMX19_00894: MPMX19_00894 - Peptidyl-prolyl cis-trans isomerase D, at 928,812 to 930,692
_00894
MPMX19_00895: MPMX19_00895 - hypothetical protein, at 930,936 to 931,115
_00895
MPMX19_00896: MPMX19_00896 - hypothetical protein, at 931,233 to 931,571
_00896
MPMX19_00897: MPMX19_00897 - hypothetical protein, at 931,594 to 931,812
_00897
Position (kb) 928
929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 927.829 kb on - strand, within MPMX19_00893 at 927.829 kb on - strand, within MPMX19_00893 at 927.957 kb on - strand, within MPMX19_00893 at 927.957 kb on - strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.196 kb on + strand, within MPMX19_00893 at 928.197 kb on - strand, within MPMX19_00893 at 928.197 kb on - strand, within MPMX19_00893 at 928.197 kb on - strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.379 kb on + strand, within MPMX19_00893 at 928.379 kb on + strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.730 kb on + strand at 928.731 kb on - strand at 928.731 kb on - strand at 928.731 kb on - strand at 928.731 kb on - strand at 928.752 kb on + strand at 928.864 kb on + strand at 928.865 kb on - strand at 929.926 kb on + strand, within MPMX19_00894 at 930.148 kb on + strand, within MPMX19_00894 at 930.244 kb on + strand, within MPMX19_00894 at 930.245 kb on - strand, within MPMX19_00894 at 930.594 kb on + strand at 930.595 kb on - strand at 930.595 kb on - strand at 930.595 kb on - strand at 930.595 kb on - strand at 930.595 kb on - strand at 930.595 kb on - strand at 930.705 kb on + strand at 930.706 kb on - strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.745 kb on + strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.746 kb on - strand at 930.750 kb on - strand at 930.750 kb on - strand at 930.890 kb on - strand at 930.890 kb on - strand at 930.937 kb on + strand at 930.937 kb on + strand at 930.937 kb on + strand at 930.938 kb on - strand at 930.938 kb on - strand at 931.140 kb on + strand at 931.140 kb on + strand at 931.141 kb on - strand at 931.141 kb on - strand at 931.141 kb on - strand at 931.141 kb on - strand at 931.178 kb on + strand at 931.178 kb on + strand at 931.178 kb on + strand at 931.179 kb on - strand at 931.179 kb on - strand at 931.184 kb on + strand at 931.184 kb on + strand at 931.184 kb on + strand at 931.184 kb on + strand at 931.184 kb on + strand at 931.185 kb on - strand at 931.185 kb on - strand at 931.185 kb on - strand at 931.185 kb on - strand at 931.487 kb on + strand, within MPMX19_00896 at 931.487 kb on + strand, within MPMX19_00896
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 927,829 - MPMX19_00893 0.38 -1.4 927,829 - MPMX19_00893 0.38 -0.3 927,957 - MPMX19_00893 0.46 +0.3 927,957 - MPMX19_00893 0.46 -0.9 928,037 + MPMX19_00893 0.51 -1.2 928,037 + MPMX19_00893 0.51 -1.3 928,037 + MPMX19_00893 0.51 -0.1 928,037 + MPMX19_00893 0.51 -0.5 928,037 + MPMX19_00893 0.51 -0.6 928,037 + MPMX19_00893 0.51 +0.4 928,037 + MPMX19_00893 0.51 +0.4 928,037 + MPMX19_00893 0.51 -0.9 928,037 + MPMX19_00893 0.51 -0.6 928,037 + MPMX19_00893 0.51 +0.2 928,037 + MPMX19_00893 0.51 +0.6 928,037 + MPMX19_00893 0.51 -0.2 928,037 + MPMX19_00893 0.51 -0.1 928,037 + MPMX19_00893 0.51 -0.6 928,037 + MPMX19_00893 0.51 -0.7 928,038 - MPMX19_00893 0.52 -0.0 928,038 - MPMX19_00893 0.52 -0.8 928,038 - MPMX19_00893 0.52 -1.4 928,038 - MPMX19_00893 0.52 -0.7 928,038 - MPMX19_00893 0.52 -2.6 928,038 - MPMX19_00893 0.52 -0.9 928,038 - MPMX19_00893 0.52 -0.7 928,038 - MPMX19_00893 0.52 +0.5 928,038 - MPMX19_00893 0.52 +0.0 928,038 - MPMX19_00893 0.52 +0.5 928,038 - MPMX19_00893 0.52 +0.8 928,038 - MPMX19_00893 0.52 -1.1 928,038 - MPMX19_00893 0.52 +0.5 928,067 + MPMX19_00893 0.53 +0.8 928,067 + MPMX19_00893 0.53 +1.0 928,067 + MPMX19_00893 0.53 -0.0 928,067 + MPMX19_00893 0.53 -1.5 928,068 - MPMX19_00893 0.54 +0.0 928,068 - MPMX19_00893 0.54 -0.2 928,068 - MPMX19_00893 0.54 -1.2 928,068 - MPMX19_00893 0.54 -1.5 928,068 - MPMX19_00893 0.54 -1.0 928,068 - MPMX19_00893 0.54 -0.7 928,196 + MPMX19_00893 0.62 -0.4 928,197 - MPMX19_00893 0.62 -0.0 928,197 - MPMX19_00893 0.62 -0.3 928,197 - MPMX19_00893 0.62 -0.9 928,370 + MPMX19_00893 0.73 +0.7 928,370 + MPMX19_00893 0.73 -0.9 928,370 + MPMX19_00893 0.73 +0.4 928,370 + MPMX19_00893 0.73 -0.2 928,370 + MPMX19_00893 0.73 -0.7 928,370 + MPMX19_00893 0.73 +1.2 928,370 + MPMX19_00893 0.73 -0.4 928,370 + MPMX19_00893 0.73 -1.8 928,370 + MPMX19_00893 0.73 -0.8 928,370 + MPMX19_00893 0.73 -0.3 928,370 + MPMX19_00893 0.73 -0.4 928,370 + MPMX19_00893 0.73 -0.2 928,371 - MPMX19_00893 0.74 +0.5 928,371 - MPMX19_00893 0.74 +0.2 928,371 - MPMX19_00893 0.74 -0.2 928,371 - MPMX19_00893 0.74 -2.8 928,371 - MPMX19_00893 0.74 -1.1 928,371 - MPMX19_00893 0.74 -0.5 928,371 - MPMX19_00893 0.74 -0.6 928,371 - MPMX19_00893 0.74 -0.2 928,371 - MPMX19_00893 0.74 +0.5 928,379 + MPMX19_00893 0.74 -2.0 928,379 + MPMX19_00893 0.74 -1.3 928,380 - MPMX19_00893 0.74 -0.6 928,380 - MPMX19_00893 0.74 -0.7 928,380 - MPMX19_00893 0.74 -0.9 928,380 - MPMX19_00893 0.74 -0.3 928,380 - MPMX19_00893 0.74 +0.5 928,380 - MPMX19_00893 0.74 -1.1 928,661 + -0.6 928,661 + -1.8 928,661 + -1.4 928,661 + +0.8 928,661 + +1.0 928,661 + +0.3 928,661 + +0.3 928,661 + -1.0 928,661 + -1.2 928,661 - +0.8 928,662 - -0.1 928,662 - -1.4 928,662 - +0.2 928,662 - -1.4 928,662 - -1.1 928,662 - -0.6 928,662 - -0.2 928,662 - -0.4 928,730 + -0.0 928,731 - +1.8 928,731 - -0.8 928,731 - -0.5 928,731 - -0.5 928,752 + -0.8 928,864 + -0.2 928,865 - -0.7 929,926 + MPMX19_00894 0.59 -1.2 930,148 + MPMX19_00894 0.71 -1.2 930,244 + MPMX19_00894 0.76 -0.1 930,245 - MPMX19_00894 0.76 -0.1 930,594 + -0.9 930,595 - -0.2 930,595 - +0.4 930,595 - -1.8 930,595 - +0.0 930,595 - -0.1 930,595 - +0.8 930,705 + +0.3 930,706 - +0.7 930,745 + -2.0 930,745 + -0.6 930,745 + -0.4 930,745 + -1.3 930,745 + -1.2 930,745 + -0.8 930,745 + -0.7 930,745 + -1.2 930,745 + -0.5 930,745 + +0.1 930,745 + -0.8 930,745 + +0.5 930,746 - +2.1 930,746 - -0.2 930,746 - -1.6 930,746 - -0.7 930,746 - -0.8 930,746 - -0.0 930,746 - -0.1 930,746 - +0.4 930,746 - +0.4 930,746 - -2.6 930,746 - +0.9 930,746 - -0.6 930,746 - -0.8 930,746 - -0.8 930,746 - -1.6 930,746 - +0.1 930,746 - -0.2 930,746 - +0.6 930,746 - -0.7 930,746 - +1.0 930,746 - -1.6 930,746 - +0.8 930,746 - +0.1 930,746 - -0.9 930,746 - +0.0 930,746 - -1.6 930,746 - -0.4 930,746 - -0.8 930,746 - +0.0 930,746 - +1.2 930,746 - -1.2 930,746 - -1.0 930,746 - -0.0 930,746 - -1.7 930,746 - -0.6 930,750 - +0.4 930,750 - -1.0 930,890 - +0.4 930,890 - +1.2 930,937 + -0.0 930,937 + -0.3 930,937 + -0.2 930,938 - -1.1 930,938 - -0.6 931,140 + -0.4 931,140 + -1.7 931,141 - -2.3 931,141 - -0.8 931,141 - +0.6 931,141 - -1.8 931,178 + -2.6 931,178 + -0.4 931,178 + +1.5 931,179 - -1.2 931,179 - +0.4 931,184 + -0.6 931,184 + -0.3 931,184 + -1.2 931,184 + +0.8 931,184 + +1.5 931,185 - +1.3 931,185 - +1.0 931,185 - -0.2 931,185 - +0.3 931,487 + MPMX19_00896 0.75 +0.2 931,487 + MPMX19_00896 0.75 +1.3
Or see this region's nucleotide sequence