Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF565 and GFF566 are separated by 5 nucleotides GFF566 and GFF567 are separated by 72 nucleotides GFF567 and GFF568 are separated by 1 nucleotides
GFF565 - hypothetical protein, at 619,912 to 620,232
GFF565
GFF566 - hypothetical protein, at 620,238 to 620,720
GFF566
GFF567 - ABC transporter ATP-binding protein uup, at 620,793 to 622,700
GFF567
GFF568 - UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase, at 622,702 to 624,618
GFF568
Position (kb) 620
621
622
623 Strain fitness (log2 ratio) -2
-1
0
1
2 at 619.812 kb on - strand at 619.813 kb on + strand at 619.813 kb on + strand at 619.813 kb on + strand at 619.817 kb on - strand at 619.817 kb on - strand at 619.823 kb on + strand at 619.824 kb on - strand at 619.839 kb on + strand at 619.839 kb on + strand at 619.839 kb on + strand at 619.839 kb on + strand at 619.839 kb on + strand at 619.840 kb on - strand at 619.857 kb on - strand at 619.917 kb on + strand at 619.952 kb on + strand, within GFF565 at 619.952 kb on + strand, within GFF565 at 619.956 kb on + strand, within GFF565 at 619.956 kb on + strand, within GFF565 at 619.956 kb on + strand, within GFF565 at 619.956 kb on + strand, within GFF565 at 619.957 kb on - strand, within GFF565 at 619.967 kb on + strand, within GFF565 at 619.967 kb on + strand, within GFF565 at 619.967 kb on + strand, within GFF565 at 619.967 kb on + strand, within GFF565 at 619.967 kb on + strand, within GFF565 at 619.967 kb on + strand, within GFF565 at 619.967 kb on + strand, within GFF565 at 619.971 kb on + strand, within GFF565 at 619.971 kb on + strand, within GFF565 at 620.109 kb on + strand, within GFF565 at 620.109 kb on + strand, within GFF565 at 620.109 kb on + strand, within GFF565 at 620.130 kb on + strand, within GFF565 at 620.130 kb on + strand, within GFF565 at 620.139 kb on + strand, within GFF565 at 620.140 kb on - strand, within GFF565 at 620.140 kb on - strand, within GFF565 at 620.189 kb on + strand, within GFF565 at 620.189 kb on + strand, within GFF565 at 620.189 kb on + strand, within GFF565 at 620.213 kb on + strand at 620.213 kb on + strand at 620.213 kb on + strand at 620.214 kb on - strand at 620.238 kb on - strand at 620.238 kb on - strand at 620.365 kb on + strand, within GFF566 at 620.365 kb on + strand, within GFF566 at 620.365 kb on + strand, within GFF566 at 620.365 kb on + strand, within GFF566 at 620.365 kb on + strand, within GFF566 at 620.365 kb on + strand, within GFF566 at 620.375 kb on + strand, within GFF566 at 620.375 kb on + strand, within GFF566 at 620.389 kb on + strand, within GFF566 at 620.389 kb on + strand, within GFF566 at 620.389 kb on + strand, within GFF566 at 620.389 kb on + strand, within GFF566 at 620.389 kb on + strand, within GFF566 at 620.389 kb on + strand, within GFF566 at 620.390 kb on - strand, within GFF566 at 620.390 kb on - strand, within GFF566 at 620.390 kb on - strand, within GFF566 at 620.395 kb on + strand, within GFF566 at 620.395 kb on + strand, within GFF566 at 620.395 kb on + strand, within GFF566 at 620.396 kb on - strand, within GFF566 at 620.396 kb on - strand, within GFF566 at 620.398 kb on + strand, within GFF566 at 620.398 kb on + strand, within GFF566 at 620.480 kb on + strand, within GFF566 at 620.481 kb on - strand, within GFF566 at 620.481 kb on - strand, within GFF566 at 620.494 kb on + strand, within GFF566 at 620.495 kb on - strand, within GFF566 at 620.517 kb on - strand, within GFF566 at 620.606 kb on + strand, within GFF566 at 620.662 kb on - strand, within GFF566 at 620.717 kb on - strand at 620.718 kb on + strand at 620.718 kb on + strand at 620.719 kb on - strand at 620.719 kb on - strand at 620.719 kb on - strand at 620.750 kb on + strand at 620.750 kb on + strand at 620.750 kb on + strand at 620.751 kb on - strand at 620.751 kb on - strand at 620.751 kb on - strand at 620.751 kb on - strand at 620.795 kb on - strand at 620.899 kb on + strand at 620.949 kb on + strand at 620.949 kb on + strand at 620.950 kb on - strand at 620.950 kb on - strand at 621.086 kb on + strand, within GFF567 at 621.087 kb on - strand, within GFF567 at 621.130 kb on + strand, within GFF567 at 621.130 kb on + strand, within GFF567 at 621.131 kb on - strand, within GFF567 at 621.241 kb on + strand, within GFF567 at 621.307 kb on - strand, within GFF567 at 621.315 kb on + strand, within GFF567 at 621.315 kb on + strand, within GFF567 at 621.315 kb on + strand, within GFF567 at 621.316 kb on - strand, within GFF567 at 621.316 kb on - strand, within GFF567 at 621.316 kb on - strand, within GFF567 at 621.316 kb on - strand, within GFF567 at 621.316 kb on - strand, within GFF567 at 621.336 kb on + strand, within GFF567 at 621.337 kb on - strand, within GFF567 at 621.430 kb on + strand, within GFF567 at 621.541 kb on + strand, within GFF567 at 621.541 kb on + strand, within GFF567 at 621.542 kb on - strand, within GFF567 at 621.570 kb on + strand, within GFF567 at 621.571 kb on - strand, within GFF567 at 621.645 kb on + strand, within GFF567 at 621.683 kb on + strand, within GFF567 at 621.684 kb on - strand, within GFF567 at 621.684 kb on - strand, within GFF567 at 621.684 kb on - strand, within GFF567 at 621.692 kb on + strand, within GFF567 at 621.864 kb on - strand, within GFF567 at 621.864 kb on - strand, within GFF567 at 621.864 kb on - strand, within GFF567 at 621.945 kb on + strand, within GFF567 at 621.946 kb on - strand, within GFF567 at 621.946 kb on - strand, within GFF567 at 621.955 kb on - strand, within GFF567 at 621.985 kb on + strand, within GFF567 at 621.985 kb on + strand, within GFF567 at 621.985 kb on + strand, within GFF567 at 621.985 kb on + strand, within GFF567 at 621.986 kb on - strand, within GFF567 at 621.986 kb on - strand, within GFF567 at 621.986 kb on - strand, within GFF567 at 622.032 kb on - strand, within GFF567 at 622.032 kb on - strand, within GFF567 at 622.038 kb on - strand, within GFF567 at 622.070 kb on + strand, within GFF567 at 622.070 kb on + strand, within GFF567 at 622.186 kb on - strand, within GFF567 at 622.186 kb on - strand, within GFF567 at 622.294 kb on - strand, within GFF567 at 622.329 kb on + strand, within GFF567 at 622.330 kb on - strand, within GFF567 at 622.330 kb on - strand, within GFF567 at 622.330 kb on - strand, within GFF567 at 622.332 kb on + strand, within GFF567 at 622.333 kb on - strand, within GFF567 at 622.333 kb on - strand, within GFF567 at 622.333 kb on - strand, within GFF567 at 622.333 kb on - strand, within GFF567 at 622.333 kb on - strand, within GFF567 at 622.406 kb on + strand, within GFF567 at 622.407 kb on - strand, within GFF567 at 622.407 kb on - strand, within GFF567 at 622.407 kb on - strand, within GFF567 at 622.489 kb on - strand, within GFF567 at 622.492 kb on + strand, within GFF567 at 622.492 kb on + strand, within GFF567 at 622.492 kb on + strand, within GFF567 at 622.562 kb on + strand at 622.577 kb on + strand at 622.583 kb on + strand at 622.700 kb on + strand at 622.701 kb on - strand at 622.701 kb on - strand at 622.701 kb on - strand at 622.709 kb on - strand at 622.709 kb on - strand at 622.709 kb on - strand at 622.739 kb on - strand at 622.739 kb on - strand at 622.739 kb on - strand at 622.760 kb on - strand at 622.760 kb on - strand at 622.797 kb on - strand at 623.018 kb on - strand, within GFF568 at 623.099 kb on - strand, within GFF568 at 623.138 kb on - strand, within GFF568 at 623.169 kb on + strand, within GFF568 at 623.170 kb on - strand, within GFF568 at 623.170 kb on - strand, within GFF568 at 623.197 kb on - strand, within GFF568 at 623.448 kb on - strand, within GFF568 at 623.480 kb on - strand, within GFF568 at 623.480 kb on - strand, within GFF568 at 623.515 kb on - strand, within GFF568 at 623.515 kb on - strand, within GFF568 at 623.517 kb on - strand, within GFF568 at 623.517 kb on - strand, within GFF568 at 623.531 kb on - strand, within GFF568 at 623.604 kb on - strand, within GFF568 at 623.655 kb on - strand, within GFF568 at 623.655 kb on - strand, within GFF568 at 623.674 kb on - strand, within GFF568 at 623.687 kb on - strand, within GFF568 at 623.687 kb on - strand, within GFF568 at 623.687 kb on - strand, within GFF568 at 623.687 kb on - strand, within GFF568
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x remove 619,812 - +0.1 619,813 + -1.2 619,813 + -0.7 619,813 + -0.7 619,817 - -0.3 619,817 - -0.5 619,823 + -0.4 619,824 - +0.5 619,839 + +0.7 619,839 + +0.1 619,839 + -0.3 619,839 + +0.1 619,839 + -0.7 619,840 - -0.8 619,857 - -0.9 619,917 + -0.4 619,952 + GFF565 0.12 +1.4 619,952 + GFF565 0.12 +1.0 619,956 + GFF565 0.14 -0.7 619,956 + GFF565 0.14 +0.7 619,956 + GFF565 0.14 -0.6 619,956 + GFF565 0.14 -0.6 619,957 - GFF565 0.14 -0.7 619,967 + GFF565 0.17 +0.9 619,967 + GFF565 0.17 -0.4 619,967 + GFF565 0.17 +0.0 619,967 + GFF565 0.17 -0.0 619,967 + GFF565 0.17 -0.9 619,967 + GFF565 0.17 -0.2 619,967 + GFF565 0.17 +0.3 619,971 + GFF565 0.18 -0.4 619,971 + GFF565 0.18 -0.0 620,109 + GFF565 0.61 -0.8 620,109 + GFF565 0.61 -0.2 620,109 + GFF565 0.61 -0.3 620,130 + GFF565 0.68 -0.1 620,130 + GFF565 0.68 +0.4 620,139 + GFF565 0.71 -0.7 620,140 - GFF565 0.71 -0.9 620,140 - GFF565 0.71 +0.6 620,189 + GFF565 0.86 +0.1 620,189 + GFF565 0.86 +0.5 620,189 + GFF565 0.86 +1.5 620,213 + -0.4 620,213 + +0.9 620,213 + +1.1 620,214 - -0.7 620,238 - -0.9 620,238 - -1.9 620,365 + GFF566 0.26 +0.3 620,365 + GFF566 0.26 +0.9 620,365 + GFF566 0.26 -0.4 620,365 + GFF566 0.26 +1.6 620,365 + GFF566 0.26 -0.6 620,365 + GFF566 0.26 +0.3 620,375 + GFF566 0.28 +0.5 620,375 + GFF566 0.28 -0.1 620,389 + GFF566 0.31 +0.6 620,389 + GFF566 0.31 -1.2 620,389 + GFF566 0.31 +0.5 620,389 + GFF566 0.31 -0.1 620,389 + GFF566 0.31 -0.3 620,389 + GFF566 0.31 -1.0 620,390 - GFF566 0.31 -1.5 620,390 - GFF566 0.31 -0.1 620,390 - GFF566 0.31 +0.1 620,395 + GFF566 0.33 -1.0 620,395 + GFF566 0.33 -1.7 620,395 + GFF566 0.33 +0.6 620,396 - GFF566 0.33 +0.1 620,396 - GFF566 0.33 -1.2 620,398 + GFF566 0.33 -0.2 620,398 + GFF566 0.33 -0.1 620,480 + GFF566 0.50 -1.7 620,481 - GFF566 0.50 -0.9 620,481 - GFF566 0.50 +0.3 620,494 + GFF566 0.53 -1.1 620,495 - GFF566 0.53 +0.1 620,517 - GFF566 0.58 -1.7 620,606 + GFF566 0.76 -1.0 620,662 - GFF566 0.88 +0.5 620,717 - -1.0 620,718 + -0.6 620,718 + -1.7 620,719 - -1.1 620,719 - -1.5 620,719 - -0.9 620,750 + +1.5 620,750 + -1.7 620,750 + -0.5 620,751 - -0.0 620,751 - -0.5 620,751 - +0.0 620,751 - -0.9 620,795 - -1.0 620,899 + -1.5 620,949 + -1.9 620,949 + -0.9 620,950 - -0.5 620,950 - -0.6 621,086 + GFF567 0.15 -0.9 621,087 - GFF567 0.15 -0.3 621,130 + GFF567 0.18 -0.3 621,130 + GFF567 0.18 -0.1 621,131 - GFF567 0.18 -0.4 621,241 + GFF567 0.23 -1.5 621,307 - GFF567 0.27 -0.6 621,315 + GFF567 0.27 -2.2 621,315 + GFF567 0.27 -0.1 621,315 + GFF567 0.27 -2.0 621,316 - GFF567 0.27 +0.4 621,316 - GFF567 0.27 +0.1 621,316 - GFF567 0.27 -0.9 621,316 - GFF567 0.27 -0.2 621,316 - GFF567 0.27 -0.5 621,336 + GFF567 0.28 +0.2 621,337 - GFF567 0.29 -0.8 621,430 + GFF567 0.33 -1.0 621,541 + GFF567 0.39 -1.5 621,541 + GFF567 0.39 -0.6 621,542 - GFF567 0.39 -0.9 621,570 + GFF567 0.41 -0.9 621,571 - GFF567 0.41 -0.5 621,645 + GFF567 0.45 +0.1 621,683 + GFF567 0.47 +2.0 621,684 - GFF567 0.47 -0.2 621,684 - GFF567 0.47 +0.8 621,684 - GFF567 0.47 +0.2 621,692 + GFF567 0.47 -1.4 621,864 - GFF567 0.56 -2.2 621,864 - GFF567 0.56 -1.2 621,864 - GFF567 0.56 +0.1 621,945 + GFF567 0.60 +0.1 621,946 - GFF567 0.60 -2.3 621,946 - GFF567 0.60 -0.9 621,955 - GFF567 0.61 -1.2 621,985 + GFF567 0.62 +0.9 621,985 + GFF567 0.62 -0.5 621,985 + GFF567 0.62 -0.2 621,985 + GFF567 0.62 -1.5 621,986 - GFF567 0.63 +0.2 621,986 - GFF567 0.63 -0.7 621,986 - GFF567 0.63 -1.7 622,032 - GFF567 0.65 -0.4 622,032 - GFF567 0.65 +0.1 622,038 - GFF567 0.65 -1.3 622,070 + GFF567 0.67 +1.6 622,070 + GFF567 0.67 -0.9 622,186 - GFF567 0.73 +0.3 622,186 - GFF567 0.73 -1.9 622,294 - GFF567 0.79 -0.0 622,329 + GFF567 0.81 -0.7 622,330 - GFF567 0.81 -1.7 622,330 - GFF567 0.81 +0.1 622,330 - GFF567 0.81 +0.3 622,332 + GFF567 0.81 -0.3 622,333 - GFF567 0.81 +0.7 622,333 - GFF567 0.81 -1.5 622,333 - GFF567 0.81 -0.4 622,333 - GFF567 0.81 -0.6 622,333 - GFF567 0.81 -0.5 622,406 + GFF567 0.85 -0.6 622,407 - GFF567 0.85 -0.5 622,407 - GFF567 0.85 -1.5 622,407 - GFF567 0.85 -2.5 622,489 - GFF567 0.89 -0.5 622,492 + GFF567 0.89 -1.0 622,492 + GFF567 0.89 -1.5 622,492 + GFF567 0.89 +0.5 622,562 + +1.1 622,577 + -1.5 622,583 + -0.6 622,700 + -0.5 622,701 - -0.7 622,701 - -0.5 622,701 - -0.6 622,709 - -1.6 622,709 - -0.3 622,709 - -0.6 622,739 - +0.9 622,739 - +0.8 622,739 - -0.9 622,760 - -0.9 622,760 - +0.1 622,797 - -0.9 623,018 - GFF568 0.16 -1.0 623,099 - GFF568 0.21 +1.1 623,138 - GFF568 0.23 -0.9 623,169 + GFF568 0.24 -0.5 623,170 - GFF568 0.24 -1.2 623,170 - GFF568 0.24 +0.0 623,197 - GFF568 0.26 -0.9 623,448 - GFF568 0.39 +0.8 623,480 - GFF568 0.41 -0.5 623,480 - GFF568 0.41 -0.9 623,515 - GFF568 0.42 -0.2 623,515 - GFF568 0.42 +0.4 623,517 - GFF568 0.43 -0.2 623,517 - GFF568 0.43 -0.3 623,531 - GFF568 0.43 -0.9 623,604 - GFF568 0.47 -1.2 623,655 - GFF568 0.50 -0.2 623,655 - GFF568 0.50 +0.1 623,674 - GFF568 0.51 -1.2 623,687 - GFF568 0.51 -0.9 623,687 - GFF568 0.51 +0.8 623,687 - GFF568 0.51 -2.0 623,687 - GFF568 0.51 -1.2
Or see this region's nucleotide sequence