Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF407 and GFF408 are separated by 338 nucleotides GFF408 and GFF409 are separated by 70 nucleotides GFF409 and GFF410 are separated by 591 nucleotides
GFF407 - hypothetical protein, at 452,112 to 452,480
GFF407
GFF408 - hypothetical protein, at 452,819 to 453,115
GFF408
GFF409 - hypothetical protein, at 453,186 to 453,452
GFF409
GFF410 - hypothetical protein, at 454,044 to 454,658
GFF410
Position (kb) 452
453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 451.874 kb on + strand at 451.875 kb on - strand at 451.875 kb on - strand at 451.875 kb on - strand at 451.899 kb on - strand at 451.899 kb on - strand at 451.906 kb on - strand at 451.916 kb on - strand at 451.916 kb on - strand at 451.916 kb on - strand at 451.916 kb on - strand at 451.916 kb on - strand at 451.916 kb on - strand at 451.918 kb on + strand at 451.918 kb on + strand at 451.927 kb on + strand at 451.927 kb on + strand at 451.927 kb on + strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.928 kb on - strand at 451.948 kb on - strand at 451.961 kb on + strand at 451.961 kb on + strand at 451.962 kb on - strand at 451.962 kb on - strand at 451.962 kb on - strand at 451.980 kb on + strand at 451.981 kb on - strand at 452.013 kb on + strand at 452.015 kb on + strand at 452.016 kb on - strand at 452.016 kb on - strand at 452.052 kb on + strand at 452.053 kb on - strand at 452.063 kb on - strand at 452.063 kb on - strand at 452.106 kb on + strand at 452.107 kb on - strand at 452.107 kb on - strand at 452.107 kb on - strand at 452.177 kb on - strand, within GFF407 at 452.177 kb on - strand, within GFF407 at 452.202 kb on + strand, within GFF407 at 452.203 kb on - strand, within GFF407 at 452.203 kb on - strand, within GFF407 at 452.241 kb on - strand, within GFF407 at 452.241 kb on - strand, within GFF407 at 452.268 kb on - strand, within GFF407 at 452.316 kb on + strand, within GFF407 at 452.380 kb on + strand, within GFF407 at 452.381 kb on - strand, within GFF407 at 452.381 kb on - strand, within GFF407 at 452.381 kb on - strand, within GFF407 at 452.381 kb on - strand, within GFF407 at 452.381 kb on - strand, within GFF407 at 452.381 kb on - strand, within GFF407 at 452.402 kb on + strand, within GFF407 at 452.403 kb on - strand, within GFF407 at 452.403 kb on - strand, within GFF407 at 452.403 kb on - strand, within GFF407 at 452.421 kb on + strand, within GFF407 at 452.421 kb on + strand, within GFF407 at 452.421 kb on + strand, within GFF407 at 452.422 kb on - strand, within GFF407 at 452.422 kb on - strand, within GFF407 at 452.422 kb on - strand, within GFF407 at 452.470 kb on - strand at 452.470 kb on - strand at 452.484 kb on + strand at 452.485 kb on - strand at 452.485 kb on - strand at 452.493 kb on - strand at 452.531 kb on - strand at 452.531 kb on - strand at 452.531 kb on - strand at 452.534 kb on + strand at 452.534 kb on + strand at 452.534 kb on + strand at 452.534 kb on + strand at 452.534 kb on + strand at 452.534 kb on + strand at 452.535 kb on - strand at 452.535 kb on - strand at 452.535 kb on - strand at 452.535 kb on - strand at 452.535 kb on - strand at 452.535 kb on - strand at 452.535 kb on - strand at 452.535 kb on - strand at 452.535 kb on - strand at 452.535 kb on - strand at 452.536 kb on + strand at 452.536 kb on + strand at 452.537 kb on - strand at 452.537 kb on - strand at 452.539 kb on + strand at 452.540 kb on - strand at 452.540 kb on - strand at 452.552 kb on + strand at 452.552 kb on + strand at 452.552 kb on + strand at 452.553 kb on - strand at 452.572 kb on + strand at 452.572 kb on + strand at 452.573 kb on - strand at 452.585 kb on + strand at 452.585 kb on + strand at 452.701 kb on + strand at 452.702 kb on - strand at 452.736 kb on + strand at 452.736 kb on + strand at 452.737 kb on - strand at 452.737 kb on - strand at 452.737 kb on - strand at 452.821 kb on - strand at 452.844 kb on + strand at 452.844 kb on + strand at 452.845 kb on - strand at 452.845 kb on - strand at 452.845 kb on - strand at 452.855 kb on - strand, within GFF408 at 452.971 kb on + strand, within GFF408 at 452.971 kb on + strand, within GFF408 at 453.029 kb on + strand, within GFF408 at 453.093 kb on - strand at 453.098 kb on + strand at 453.099 kb on - strand at 453.119 kb on + strand at 453.120 kb on - strand at 453.120 kb on - strand at 453.176 kb on - strand at 453.176 kb on - strand at 453.322 kb on + strand, within GFF409 at 453.323 kb on - strand, within GFF409 at 453.333 kb on - strand, within GFF409 at 453.358 kb on - strand, within GFF409 at 453.358 kb on - strand, within GFF409 at 453.410 kb on + strand, within GFF409 at 453.411 kb on - strand, within GFF409 at 453.420 kb on + strand, within GFF409 at 453.420 kb on + strand, within GFF409 at 453.421 kb on - strand, within GFF409 at 453.423 kb on + strand, within GFF409 at 453.424 kb on - strand, within GFF409 at 453.441 kb on - strand at 453.447 kb on - strand at 453.465 kb on - strand at 453.472 kb on - strand at 453.494 kb on + strand at 453.555 kb on + strand at 453.555 kb on + strand at 453.555 kb on + strand at 453.561 kb on + strand at 453.561 kb on + strand at 453.562 kb on - strand at 453.562 kb on - strand at 453.562 kb on - strand at 453.562 kb on - strand at 453.566 kb on - strand at 453.574 kb on - strand at 453.576 kb on - strand at 453.577 kb on + strand at 453.590 kb on - strand at 453.602 kb on + strand at 453.680 kb on - strand at 453.686 kb on - strand at 453.690 kb on + strand at 453.728 kb on - strand at 453.746 kb on + strand at 453.759 kb on + strand at 453.759 kb on + strand at 453.760 kb on - strand at 453.760 kb on - strand at 453.760 kb on - strand at 453.767 kb on - strand at 453.767 kb on - strand at 453.857 kb on + strand at 453.882 kb on + strand at 453.883 kb on - strand at 453.895 kb on - strand at 453.912 kb on + strand at 453.912 kb on + strand at 453.913 kb on - strand at 453.928 kb on + strand at 453.953 kb on - strand at 453.953 kb on - strand at 453.955 kb on + strand at 453.956 kb on - strand at 453.956 kb on - strand at 453.956 kb on - strand at 453.956 kb on - strand at 453.959 kb on + strand at 453.959 kb on + strand at 453.959 kb on + strand at 453.960 kb on - strand at 453.960 kb on - strand at 453.960 kb on - strand at 453.960 kb on - strand at 453.963 kb on + strand at 453.963 kb on + strand at 453.964 kb on - strand at 453.964 kb on - strand at 453.969 kb on + strand at 453.970 kb on - strand at 453.993 kb on + strand at 453.993 kb on + strand at 453.995 kb on + strand at 453.995 kb on + strand at 453.995 kb on + strand at 453.996 kb on - strand at 453.996 kb on - strand at 454.045 kb on + strand at 454.045 kb on + strand at 454.045 kb on + strand at 454.045 kb on + strand at 454.046 kb on - strand at 454.046 kb on - strand at 454.046 kb on - strand at 454.046 kb on - strand at 454.049 kb on + strand at 454.064 kb on + strand at 454.067 kb on + strand at 454.067 kb on + strand at 454.067 kb on + strand at 454.067 kb on + strand at 454.067 kb on + strand at 454.068 kb on - strand at 454.068 kb on - strand at 454.074 kb on + strand at 454.075 kb on - strand at 454.100 kb on - strand at 454.100 kb on - strand at 454.110 kb on + strand, within GFF410 at 454.110 kb on + strand, within GFF410 at 454.110 kb on + strand, within GFF410 at 454.110 kb on + strand, within GFF410 at 454.110 kb on + strand, within GFF410 at 454.111 kb on - strand, within GFF410 at 454.111 kb on - strand, within GFF410 at 454.111 kb on - strand, within GFF410 at 454.111 kb on - strand, within GFF410 at 454.111 kb on - strand, within GFF410
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x remove 451,874 + -1.2 451,875 - +0.8 451,875 - -0.5 451,875 - -0.8 451,899 - +0.2 451,899 - -1.4 451,906 - +1.4 451,916 - -0.1 451,916 - -0.2 451,916 - +0.5 451,916 - +0.4 451,916 - +0.3 451,916 - -3.0 451,918 + -1.8 451,918 + -1.4 451,927 + -0.8 451,927 + +0.7 451,927 + -1.0 451,928 - -1.2 451,928 - -1.5 451,928 - -1.7 451,928 - -1.2 451,928 - +0.7 451,928 - +0.5 451,928 - -0.1 451,928 - -1.5 451,928 - +0.5 451,928 - -0.2 451,948 - -0.4 451,961 + -1.4 451,961 + -0.7 451,962 - -0.8 451,962 - -0.4 451,962 - -0.6 451,980 + -1.7 451,981 - -1.2 452,013 + -1.2 452,015 + +0.2 452,016 - -0.0 452,016 - -1.3 452,052 + -0.8 452,053 - +0.2 452,063 - -1.2 452,063 - -1.2 452,106 + +0.0 452,107 - -0.8 452,107 - -1.3 452,107 - -2.2 452,177 - GFF407 0.18 -0.6 452,177 - GFF407 0.18 -1.2 452,202 + GFF407 0.24 -0.4 452,203 - GFF407 0.25 +0.2 452,203 - GFF407 0.25 +0.7 452,241 - GFF407 0.35 -1.7 452,241 - GFF407 0.35 -1.0 452,268 - GFF407 0.42 -0.8 452,316 + GFF407 0.55 +0.2 452,380 + GFF407 0.73 -0.1 452,381 - GFF407 0.73 -2.2 452,381 - GFF407 0.73 -3.2 452,381 - GFF407 0.73 -1.0 452,381 - GFF407 0.73 -0.4 452,381 - GFF407 0.73 -0.4 452,381 - GFF407 0.73 -0.2 452,402 + GFF407 0.79 -0.8 452,403 - GFF407 0.79 -0.3 452,403 - GFF407 0.79 +0.2 452,403 - GFF407 0.79 -1.0 452,421 + GFF407 0.84 -0.5 452,421 + GFF407 0.84 -1.8 452,421 + GFF407 0.84 -0.4 452,422 - GFF407 0.84 -1.7 452,422 - GFF407 0.84 -1.2 452,422 - GFF407 0.84 -0.1 452,470 - -1.2 452,470 - -0.7 452,484 + +0.5 452,485 - -1.2 452,485 - -1.2 452,493 - -0.7 452,531 - -0.7 452,531 - +1.2 452,531 - -1.1 452,534 + -0.9 452,534 + +0.1 452,534 + -1.7 452,534 + -1.2 452,534 + +0.2 452,534 + +1.7 452,535 - -1.9 452,535 - -0.7 452,535 - -0.1 452,535 - -0.5 452,535 - -0.3 452,535 - -1.3 452,535 - -0.8 452,535 - +0.5 452,535 - -0.4 452,535 - -0.9 452,536 + -0.5 452,536 + -0.4 452,537 - +0.9 452,537 - -1.8 452,539 + +1.2 452,540 - -1.7 452,540 - -0.8 452,552 + +0.4 452,552 + +0.4 452,552 + -1.1 452,553 - +0.2 452,572 + +0.8 452,572 + -1.0 452,573 - -0.2 452,585 + -1.2 452,585 + -0.2 452,701 + -1.4 452,702 - -1.5 452,736 + -0.4 452,736 + -1.4 452,737 - -0.8 452,737 - -0.4 452,737 - -1.2 452,821 - -0.7 452,844 + -1.7 452,844 + +1.0 452,845 - -0.9 452,845 - +0.4 452,845 - -2.3 452,855 - GFF408 0.12 -0.7 452,971 + GFF408 0.51 +0.2 452,971 + GFF408 0.51 -1.1 453,029 + GFF408 0.71 +1.4 453,093 - -0.4 453,098 + -2.2 453,099 - -1.2 453,119 + +0.2 453,120 - +0.0 453,120 - -0.8 453,176 - +0.2 453,176 - -1.7 453,322 + GFF409 0.51 -0.2 453,323 - GFF409 0.51 +0.2 453,333 - GFF409 0.55 -1.2 453,358 - GFF409 0.64 -1.5 453,358 - GFF409 0.64 -0.9 453,410 + GFF409 0.84 -1.4 453,411 - GFF409 0.84 -0.2 453,420 + GFF409 0.88 +1.2 453,420 + GFF409 0.88 -1.3 453,421 - GFF409 0.88 -1.4 453,423 + GFF409 0.89 -0.2 453,424 - GFF409 0.89 -1.8 453,441 - -0.3 453,447 - -0.2 453,465 - -1.0 453,472 - -0.3 453,494 + -0.4 453,555 + -1.0 453,555 + -1.4 453,555 + -0.8 453,561 + -0.4 453,561 + +0.9 453,562 - -1.2 453,562 - -0.8 453,562 - +0.9 453,562 - -1.2 453,566 - -1.4 453,574 - -0.8 453,576 - +0.7 453,577 + -0.0 453,590 - +0.9 453,602 + -0.5 453,680 - -1.8 453,686 - -0.8 453,690 + +0.3 453,728 - +0.6 453,746 + -2.5 453,759 + -0.1 453,759 + -1.0 453,760 - -0.9 453,760 - -0.1 453,760 - -0.7 453,767 - +0.6 453,767 - -0.8 453,857 + -0.2 453,882 + -0.2 453,883 - -1.4 453,895 - -1.7 453,912 + +0.9 453,912 + -0.7 453,913 - +0.4 453,928 + -1.2 453,953 - +0.7 453,953 - +0.7 453,955 + -1.3 453,956 - -0.5 453,956 - -0.6 453,956 - +0.2 453,956 - -0.2 453,959 + -0.1 453,959 + -0.1 453,959 + -0.3 453,960 - -0.7 453,960 - -1.8 453,960 - +0.7 453,960 - -0.5 453,963 + +0.2 453,963 + -0.4 453,964 - -1.8 453,964 - -1.4 453,969 + +0.9 453,970 - -0.3 453,993 + +0.2 453,993 + -1.6 453,995 + -0.7 453,995 + -0.7 453,995 + -0.4 453,996 - +0.1 453,996 - -0.9 454,045 + -0.3 454,045 + +0.8 454,045 + -0.6 454,045 + -1.1 454,046 - -0.3 454,046 - -1.7 454,046 - +0.8 454,046 - +1.2 454,049 + +0.3 454,064 + +0.2 454,067 + -0.2 454,067 + +0.3 454,067 + -1.0 454,067 + -1.2 454,067 + -0.4 454,068 - -0.0 454,068 - -0.5 454,074 + -0.1 454,075 - -0.4 454,100 - +0.5 454,100 - -0.4 454,110 + GFF410 0.11 -1.4 454,110 + GFF410 0.11 -0.8 454,110 + GFF410 0.11 -0.3 454,110 + GFF410 0.11 -1.4 454,110 + GFF410 0.11 +0.8 454,111 - GFF410 0.11 +0.2 454,111 - GFF410 0.11 -0.2 454,111 - GFF410 0.11 -0.7 454,111 - GFF410 0.11 -0.5 454,111 - GFF410 0.11 -0.7
Or see this region's nucleotide sequence