Strain Fitness in Methylophilus sp. DMC18 around GFF1037

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1036 and GFF1037 are separated by 3 nucleotidesGFF1037 and GFF1038 are separated by 1 nucleotides GFF1036 - Lon protease, at 277,411 to 279,576 GFF1036 GFF1037 - Heat shock protein 15, at 279,580 to 280,005 GFF1037 GFF1038 - hypothetical protein, at 280,007 to 280,786 GFF1038 Position (kb) 279 280 281Strain fitness (log2 ratio) -3 -2 -1 0 1at 278.812 kb on - strand, within GFF1036at 278.812 kb on - strand, within GFF1036at 278.820 kb on - strand, within GFF1036at 278.820 kb on - strand, within GFF1036at 278.820 kb on - strand, within GFF1036at 278.871 kb on + strand, within GFF1036at 278.952 kb on + strand, within GFF1036at 278.970 kb on + strand, within GFF1036at 278.971 kb on - strand, within GFF1036at 279.001 kb on + strand, within GFF1036at 279.001 kb on + strand, within GFF1036at 279.001 kb on + strand, within GFF1036at 279.001 kb on + strand, within GFF1036at 279.001 kb on + strand, within GFF1036at 279.001 kb on + strand, within GFF1036at 279.002 kb on - strand, within GFF1036at 279.002 kb on - strand, within GFF1036at 279.003 kb on + strand, within GFF1036at 279.004 kb on - strand, within GFF1036at 279.004 kb on - strand, within GFF1036at 279.085 kb on + strand, within GFF1036at 279.085 kb on + strand, within GFF1036at 279.085 kb on + strand, within GFF1036at 279.086 kb on - strand, within GFF1036at 279.086 kb on - strand, within GFF1036at 279.088 kb on - strand, within GFF1036at 279.095 kb on + strand, within GFF1036at 279.095 kb on + strand, within GFF1036at 279.096 kb on - strand, within GFF1036at 279.454 kb on + strandat 279.454 kb on + strandat 279.454 kb on + strandat 279.454 kb on + strandat 279.454 kb on + strandat 279.454 kb on + strandat 279.465 kb on + strandat 279.465 kb on + strandat 279.522 kb on + strandat 279.523 kb on - strandat 279.534 kb on + strandat 279.534 kb on + strandat 279.535 kb on - strandat 279.541 kb on + strandat 279.541 kb on + strandat 279.541 kb on + strandat 279.541 kb on + strandat 279.541 kb on + strandat 279.542 kb on - strandat 279.542 kb on - strandat 279.542 kb on - strandat 279.542 kb on - strandat 279.579 kb on + strandat 279.579 kb on + strandat 279.580 kb on - strandat 279.580 kb on - strandat 279.580 kb on - strandat 279.641 kb on + strand, within GFF1037at 279.778 kb on - strand, within GFF1037at 279.792 kb on + strand, within GFF1037at 279.792 kb on + strand, within GFF1037at 279.800 kb on + strand, within GFF1037at 279.825 kb on + strand, within GFF1037at 279.826 kb on - strand, within GFF1037at 279.830 kb on + strand, within GFF1037at 279.831 kb on - strand, within GFF1037at 279.860 kb on + strand, within GFF1037at 279.860 kb on + strand, within GFF1037at 279.861 kb on - strand, within GFF1037at 279.861 kb on - strand, within GFF1037at 279.890 kb on + strand, within GFF1037at 279.990 kb on + strandat 280.003 kb on + strandat 280.004 kb on - strandat 280.004 kb on - strandat 280.008 kb on + strandat 280.008 kb on + strandat 280.009 kb on - strandat 280.114 kb on + strand, within GFF1038at 280.115 kb on - strand, within GFF1038at 280.126 kb on + strand, within GFF1038at 280.126 kb on + strand, within GFF1038at 280.126 kb on + strand, within GFF1038at 280.126 kb on + strand, within GFF1038at 280.127 kb on - strand, within GFF1038at 280.127 kb on - strand, within GFF1038at 280.127 kb on - strand, within GFF1038at 280.127 kb on - strand, within GFF1038at 280.127 kb on - strand, within GFF1038at 280.142 kb on + strand, within GFF1038at 280.142 kb on + strand, within GFF1038at 280.142 kb on + strand, within GFF1038at 280.143 kb on - strand, within GFF1038at 280.143 kb on - strand, within GFF1038at 280.143 kb on - strand, within GFF1038at 280.165 kb on + strand, within GFF1038at 280.165 kb on + strand, within GFF1038at 280.165 kb on + strand, within GFF1038at 280.166 kb on - strand, within GFF1038at 280.356 kb on + strand, within GFF1038at 280.356 kb on + strand, within GFF1038at 280.356 kb on + strand, within GFF1038at 280.356 kb on + strand, within GFF1038at 280.356 kb on + strand, within GFF1038at 280.357 kb on - strand, within GFF1038at 280.357 kb on - strand, within GFF1038at 280.357 kb on - strand, within GFF1038at 280.357 kb on - strand, within GFF1038at 280.357 kb on - strand, within GFF1038at 280.360 kb on + strand, within GFF1038at 280.360 kb on + strand, within GFF1038at 280.360 kb on + strand, within GFF1038at 280.361 kb on - strand, within GFF1038at 280.361 kb on - strand, within GFF1038at 280.361 kb on - strand, within GFF1038at 280.361 kb on - strand, within GFF1038at 280.361 kb on - strand, within GFF1038at 280.361 kb on - strand, within GFF1038at 280.361 kb on - strand, within GFF1038at 280.361 kb on - strand, within GFF1038at 280.362 kb on - strand, within GFF1038at 280.395 kb on + strand, within GFF1038at 280.395 kb on + strand, within GFF1038at 280.419 kb on - strand, within GFF1038at 280.509 kb on - strand, within GFF1038at 280.539 kb on + strand, within GFF1038at 280.539 kb on + strand, within GFF1038at 280.539 kb on + strand, within GFF1038at 280.539 kb on + strand, within GFF1038at 280.539 kb on + strand, within GFF1038at 280.540 kb on - strand, within GFF1038at 280.540 kb on - strand, within GFF1038at 280.540 kb on - strand, within GFF1038at 280.540 kb on - strand, within GFF1038at 280.678 kb on + strand, within GFF1038at 280.679 kb on - strand, within GFF1038at 280.708 kb on + strand, within GFF1038at 280.709 kb on - strandat 280.709 kb on - strandat 280.709 kb on - strandat 280.725 kb on + strandat 280.841 kb on + strandat 280.851 kb on - strandat 280.857 kb on + strandat 280.858 kb on - strandat 280.905 kb on + strandat 280.906 kb on - strandat 280.906 kb on - strandat 280.906 kb on - strandat 280.906 kb on - strandat 280.906 kb on - strandat 280.957 kb on + strandat 280.957 kb on + strandat 280.957 kb on + strandat 280.957 kb on + strandat 280.957 kb on + strandat 280.958 kb on - strandat 280.958 kb on - strandat 280.969 kb on + strandat 280.969 kb on + strandat 280.969 kb on + strandat 280.974 kb on + strandat 280.979 kb on + strandat 280.980 kb on - strandat 281.004 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x
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278,812 - GFF1036 0.65 -1.4
278,812 - GFF1036 0.65 +0.1
278,820 - GFF1036 0.65 -0.9
278,820 - GFF1036 0.65 -0.2
278,820 - GFF1036 0.65 -0.3
278,871 + GFF1036 0.67 +0.3
278,952 + GFF1036 0.71 -0.5
278,970 + GFF1036 0.72 -0.4
278,971 - GFF1036 0.72 +0.5
279,001 + GFF1036 0.73 -3.0
279,001 + GFF1036 0.73 +0.1
279,001 + GFF1036 0.73 -0.9
279,001 + GFF1036 0.73 -0.7
279,001 + GFF1036 0.73 -3.2
279,001 + GFF1036 0.73 -0.9
279,002 - GFF1036 0.73 +0.1
279,002 - GFF1036 0.73 -0.9
279,003 + GFF1036 0.73 -1.2
279,004 - GFF1036 0.74 -1.3
279,004 - GFF1036 0.74 +0.1
279,085 + GFF1036 0.77 -1.2
279,085 + GFF1036 0.77 -1.7
279,085 + GFF1036 0.77 +0.1
279,086 - GFF1036 0.77 -1.3
279,086 - GFF1036 0.77 -1.6
279,088 - GFF1036 0.77 +0.3
279,095 + GFF1036 0.78 -1.4
279,095 + GFF1036 0.78 +1.5
279,096 - GFF1036 0.78 +0.4
279,454 + -0.9
279,454 + -0.6
279,454 + -1.4
279,454 + +0.4
279,454 + -0.8
279,454 + -0.2
279,465 + -1.9
279,465 + -1.4
279,522 + -2.3
279,523 - +0.4
279,534 + -1.0
279,534 + +0.0
279,535 - -1.2
279,541 + -1.4
279,541 + -0.4
279,541 + -0.3
279,541 + -0.4
279,541 + -1.3
279,542 - -0.3
279,542 - +0.7
279,542 - -0.8
279,542 - -0.9
279,579 + +0.1
279,579 + -0.1
279,580 - +1.1
279,580 - -0.4
279,580 - -1.2
279,641 + GFF1037 0.14 -0.8
279,778 - GFF1037 0.46 +1.1
279,792 + GFF1037 0.50 +0.4
279,792 + GFF1037 0.50 -0.2
279,800 + GFF1037 0.52 -1.2
279,825 + GFF1037 0.58 -1.4
279,826 - GFF1037 0.58 -0.1
279,830 + GFF1037 0.59 -0.1
279,831 - GFF1037 0.59 +0.1
279,860 + GFF1037 0.66 -0.9
279,860 + GFF1037 0.66 -0.9
279,861 - GFF1037 0.66 -1.3
279,861 - GFF1037 0.66 +1.1
279,890 + GFF1037 0.73 -1.2
279,990 + +0.9
280,003 + -0.7
280,004 - -0.9
280,004 - +0.1
280,008 + +0.7
280,008 + -0.8
280,009 - -0.6
280,114 + GFF1038 0.14 -1.4
280,115 - GFF1038 0.14 +0.1
280,126 + GFF1038 0.15 -1.9
280,126 + GFF1038 0.15 -0.9
280,126 + GFF1038 0.15 +0.4
280,126 + GFF1038 0.15 -0.3
280,127 - GFF1038 0.15 -0.9
280,127 - GFF1038 0.15 -2.0
280,127 - GFF1038 0.15 -0.9
280,127 - GFF1038 0.15 -0.1
280,127 - GFF1038 0.15 -1.4
280,142 + GFF1038 0.17 +0.1
280,142 + GFF1038 0.17 -1.3
280,142 + GFF1038 0.17 -1.1
280,143 - GFF1038 0.17 -0.7
280,143 - GFF1038 0.17 -0.3
280,143 - GFF1038 0.17 -0.9
280,165 + GFF1038 0.20 -0.3
280,165 + GFF1038 0.20 -1.2
280,165 + GFF1038 0.20 -0.5
280,166 - GFF1038 0.20 -0.9
280,356 + GFF1038 0.45 -1.7
280,356 + GFF1038 0.45 -0.4
280,356 + GFF1038 0.45 -0.2
280,356 + GFF1038 0.45 -1.2
280,356 + GFF1038 0.45 +0.1
280,357 - GFF1038 0.45 -1.4
280,357 - GFF1038 0.45 -1.5
280,357 - GFF1038 0.45 -1.3
280,357 - GFF1038 0.45 -0.9
280,357 - GFF1038 0.45 -0.6
280,360 + GFF1038 0.45 -1.9
280,360 + GFF1038 0.45 +0.8
280,360 + GFF1038 0.45 -1.6
280,361 - GFF1038 0.45 -0.9
280,361 - GFF1038 0.45 -1.0
280,361 - GFF1038 0.45 -1.4
280,361 - GFF1038 0.45 -0.9
280,361 - GFF1038 0.45 -0.4
280,361 - GFF1038 0.45 -0.9
280,361 - GFF1038 0.45 -0.6
280,361 - GFF1038 0.45 -0.1
280,362 - GFF1038 0.46 -0.4
280,395 + GFF1038 0.50 -1.3
280,395 + GFF1038 0.50 +0.1
280,419 - GFF1038 0.53 -1.1
280,509 - GFF1038 0.64 -0.9
280,539 + GFF1038 0.68 -1.9
280,539 + GFF1038 0.68 -0.6
280,539 + GFF1038 0.68 -0.7
280,539 + GFF1038 0.68 -1.7
280,539 + GFF1038 0.68 -0.9
280,540 - GFF1038 0.68 +0.1
280,540 - GFF1038 0.68 -0.4
280,540 - GFF1038 0.68 -0.2
280,540 - GFF1038 0.68 -0.5
280,678 + GFF1038 0.86 -0.1
280,679 - GFF1038 0.86 -0.2
280,708 + GFF1038 0.90 -1.4
280,709 - +0.1
280,709 - +0.1
280,709 - -0.2
280,725 + +1.1
280,841 + +0.1
280,851 - +0.8
280,857 + -0.7
280,858 - -1.7
280,905 + -1.7
280,906 - -1.2
280,906 - -0.9
280,906 - -0.9
280,906 - -1.7
280,906 - -0.2
280,957 + -0.9
280,957 + -2.6
280,957 + +0.1
280,957 + -0.2
280,957 + +0.5
280,958 - -1.0
280,958 - -1.7
280,969 + -0.7
280,969 + -0.9
280,969 + -0.8
280,974 + +1.1
280,979 + -0.6
280,980 - -1.4
281,004 + -1.4

Or see this region's nucleotide sequence