Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06968 and MPMX19_06969 overlap by 4 nucleotides MPMX19_06969 and MPMX19_06970 are separated by 8 nucleotides MPMX19_06970 and MPMX19_06971 are separated by 23 nucleotides MPMX19_06971 and MPMX19_06972 are separated by 38 nucleotides
MPMX19_06968: MPMX19_06968 - hypothetical protein, at 245,250 to 246,743
_06968
MPMX19_06969: MPMX19_06969 - hypothetical protein, at 246,740 to 246,994
_06969
MPMX19_06970: MPMX19_06970 - putative ABC transporter ATP-binding protein YknY, at 247,003 to 247,695
_06970
MPMX19_06971: MPMX19_06971 - Macrolide export ATP-binding/permease protein MacB, at 247,719 to 248,921
_06971
MPMX19_06972: MPMX19_06972 - hypothetical protein, at 248,960 to 250,144
_06972
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1 at 246.917 kb on + strand, within MPMX19_06969 at 246.917 kb on + strand, within MPMX19_06969 at 246.917 kb on + strand, within MPMX19_06969 at 246.918 kb on - strand, within MPMX19_06969 at 247.032 kb on + strand at 247.032 kb on + strand at 247.032 kb on + strand at 247.032 kb on + strand at 247.033 kb on - strand at 247.033 kb on - strand at 247.033 kb on - strand at 247.033 kb on - strand at 247.033 kb on - strand at 247.033 kb on - strand at 247.033 kb on - strand at 247.284 kb on - strand, within MPMX19_06970 at 248.267 kb on + strand, within MPMX19_06971 at 248.267 kb on + strand, within MPMX19_06971 at 248.267 kb on + strand, within MPMX19_06971 at 248.268 kb on - strand, within MPMX19_06971 at 248.769 kb on + strand, within MPMX19_06971 at 248.769 kb on + strand, within MPMX19_06971 at 248.769 kb on + strand, within MPMX19_06971 at 248.769 kb on + strand, within MPMX19_06971 at 248.769 kb on + strand, within MPMX19_06971 at 248.770 kb on - strand, within MPMX19_06971 at 248.770 kb on - strand, within MPMX19_06971 at 248.770 kb on - strand, within MPMX19_06971 at 248.770 kb on - strand, within MPMX19_06971 at 248.770 kb on - strand, within MPMX19_06971 at 248.770 kb on - strand, within MPMX19_06971 at 249.287 kb on + strand, within MPMX19_06972 at 249.287 kb on + strand, within MPMX19_06972 at 249.341 kb on - strand, within MPMX19_06972 at 249.346 kb on + strand, within MPMX19_06972 at 249.346 kb on + strand, within MPMX19_06972 at 249.346 kb on + strand, within MPMX19_06972 at 249.346 kb on + strand, within MPMX19_06972 at 249.346 kb on + strand, within MPMX19_06972 at 249.347 kb on - strand, within MPMX19_06972 at 249.347 kb on - strand, within MPMX19_06972 at 249.347 kb on - strand, within MPMX19_06972 at 249.347 kb on - strand, within MPMX19_06972 at 249.545 kb on + strand, within MPMX19_06972 at 249.545 kb on + strand, within MPMX19_06972 at 249.546 kb on - strand, within MPMX19_06972 at 249.546 kb on - strand, within MPMX19_06972 at 249.546 kb on - strand, within MPMX19_06972 at 249.546 kb on - strand, within MPMX19_06972 at 249.546 kb on - strand, within MPMX19_06972 at 249.546 kb on - strand, within MPMX19_06972 at 249.779 kb on - strand, within MPMX19_06972
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 246,917 + MPMX19_06969 0.69 -2.1 246,917 + MPMX19_06969 0.69 -1.4 246,917 + MPMX19_06969 0.69 -0.3 246,918 - MPMX19_06969 0.70 -0.5 247,032 + -0.9 247,032 + -1.8 247,032 + -1.1 247,032 + -2.1 247,033 - -0.7 247,033 - -0.2 247,033 - -0.8 247,033 - -0.5 247,033 - +0.2 247,033 - +0.4 247,033 - +0.3 247,284 - MPMX19_06970 0.41 +0.1 248,267 + MPMX19_06971 0.46 +0.6 248,267 + MPMX19_06971 0.46 -0.9 248,267 + MPMX19_06971 0.46 -0.7 248,268 - MPMX19_06971 0.46 -1.3 248,769 + MPMX19_06971 0.87 -1.3 248,769 + MPMX19_06971 0.87 -0.1 248,769 + MPMX19_06971 0.87 -1.9 248,769 + MPMX19_06971 0.87 +0.3 248,769 + MPMX19_06971 0.87 -1.6 248,770 - MPMX19_06971 0.87 -0.7 248,770 - MPMX19_06971 0.87 +0.6 248,770 - MPMX19_06971 0.87 -1.4 248,770 - MPMX19_06971 0.87 -1.7 248,770 - MPMX19_06971 0.87 +0.7 248,770 - MPMX19_06971 0.87 -1.4 249,287 + MPMX19_06972 0.28 -0.8 249,287 + MPMX19_06972 0.28 +0.5 249,341 - MPMX19_06972 0.32 -0.5 249,346 + MPMX19_06972 0.33 +0.2 249,346 + MPMX19_06972 0.33 -0.4 249,346 + MPMX19_06972 0.33 -0.5 249,346 + MPMX19_06972 0.33 -2.3 249,346 + MPMX19_06972 0.33 -0.5 249,347 - MPMX19_06972 0.33 -0.2 249,347 - MPMX19_06972 0.33 -0.1 249,347 - MPMX19_06972 0.33 -0.3 249,347 - MPMX19_06972 0.33 +0.8 249,545 + MPMX19_06972 0.49 -1.0 249,545 + MPMX19_06972 0.49 -0.5 249,546 - MPMX19_06972 0.49 -0.6 249,546 - MPMX19_06972 0.49 +0.2 249,546 - MPMX19_06972 0.49 -1.3 249,546 - MPMX19_06972 0.49 +0.6 249,546 - MPMX19_06972 0.49 +0.1 249,546 - MPMX19_06972 0.49 +1.3 249,779 - MPMX19_06972 0.69 +0.6
Or see this region's nucleotide sequence