Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06961

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06960 and MPMX19_06961 are separated by 45 nucleotidesMPMX19_06961 and MPMX19_06962 overlap by 4 nucleotidesMPMX19_06962 and MPMX19_06963 are separated by 38 nucleotides MPMX19_06960: MPMX19_06960 - Urocanate reductase, at 236,374 to 237,855 _06960 MPMX19_06961: MPMX19_06961 - Acetyl-CoA:oxalate CoA-transferase, at 237,901 to 239,151 _06961 MPMX19_06962: MPMX19_06962 - hypothetical protein, at 239,148 to 240,014 _06962 MPMX19_06963: MPMX19_06963 - (Z)-2-((N-methylformamido)methylene)-5- hydroxybutyrolactone dehydrogenase, at 240,053 to 241,531 _06963 Position (kb) 237 238 239 240Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 236.924 kb on + strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.994 kb on - strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.125 kb on + strand, within MPMX19_06960at 237.125 kb on + strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.129 kb on - strand, within MPMX19_06960at 237.176 kb on + strand, within MPMX19_06960at 237.176 kb on + strand, within MPMX19_06960at 237.176 kb on + strand, within MPMX19_06960at 237.177 kb on - strand, within MPMX19_06960at 237.177 kb on - strand, within MPMX19_06960at 237.177 kb on - strand, within MPMX19_06960at 237.437 kb on + strand, within MPMX19_06960at 237.437 kb on + strand, within MPMX19_06960at 237.437 kb on + strand, within MPMX19_06960at 237.437 kb on + strand, within MPMX19_06960at 237.437 kb on + strand, within MPMX19_06960at 237.437 kb on + strand, within MPMX19_06960at 237.438 kb on - strand, within MPMX19_06960at 237.438 kb on - strand, within MPMX19_06960at 237.438 kb on - strand, within MPMX19_06960at 237.438 kb on - strand, within MPMX19_06960at 237.438 kb on - strand, within MPMX19_06960at 237.438 kb on - strand, within MPMX19_06960at 237.554 kb on + strand, within MPMX19_06960at 237.554 kb on + strand, within MPMX19_06960at 237.554 kb on + strand, within MPMX19_06960at 237.554 kb on + strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.572 kb on + strand, within MPMX19_06960at 237.572 kb on + strand, within MPMX19_06960at 237.572 kb on + strand, within MPMX19_06960at 237.573 kb on - strand, within MPMX19_06960at 237.573 kb on - strand, within MPMX19_06960at 237.681 kb on + strand, within MPMX19_06960at 237.681 kb on + strand, within MPMX19_06960at 237.681 kb on + strand, within MPMX19_06960at 237.681 kb on + strand, within MPMX19_06960at 237.683 kb on + strand, within MPMX19_06960at 237.683 kb on + strand, within MPMX19_06960at 237.683 kb on + strand, within MPMX19_06960at 237.683 kb on + strand, within MPMX19_06960at 237.683 kb on + strand, within MPMX19_06960at 237.683 kb on + strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 238.433 kb on + strand, within MPMX19_06961at 238.433 kb on + strand, within MPMX19_06961at 238.433 kb on + strand, within MPMX19_06961at 238.433 kb on + strand, within MPMX19_06961at 238.434 kb on - strand, within MPMX19_06961at 238.497 kb on - strand, within MPMX19_06961at 238.682 kb on + strand, within MPMX19_06961at 238.682 kb on + strand, within MPMX19_06961at 238.682 kb on + strand, within MPMX19_06961at 238.682 kb on + strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.736 kb on + strand, within MPMX19_06961at 238.769 kb on + strand, within MPMX19_06961at 238.769 kb on + strand, within MPMX19_06961at 238.770 kb on - strand, within MPMX19_06961at 238.770 kb on - strand, within MPMX19_06961at 238.770 kb on - strand, within MPMX19_06961at 238.770 kb on - strand, within MPMX19_06961at 238.955 kb on + strand, within MPMX19_06961at 238.955 kb on + strand, within MPMX19_06961at 238.956 kb on - strand, within MPMX19_06961at 238.956 kb on - strand, within MPMX19_06961at 239.073 kb on + strandat 239.074 kb on - strandat 239.074 kb on - strandat 239.203 kb on + strandat 239.203 kb on + strandat 239.543 kb on + strand, within MPMX19_06962at 239.543 kb on + strand, within MPMX19_06962at 239.647 kb on + strand, within MPMX19_06962at 239.648 kb on - strand, within MPMX19_06962at 239.648 kb on - strand, within MPMX19_06962at 239.648 kb on - strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.904 kb on + strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 239.905 kb on - strand, within MPMX19_06962at 240.120 kb on + strandat 240.120 kb on + strandat 240.120 kb on + strandat 240.121 kb on - strandat 240.121 kb on - strandat 240.121 kb on - strandat 240.121 kb on - strandat 240.121 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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236,924 + MPMX19_06960 0.37 -0.4
236,924 + MPMX19_06960 0.37 -1.7
236,924 + MPMX19_06960 0.37 -0.2
236,924 + MPMX19_06960 0.37 -0.3
236,924 + MPMX19_06960 0.37 -0.3
236,924 + MPMX19_06960 0.37 +0.0
236,924 + MPMX19_06960 0.37 -0.5
236,925 - MPMX19_06960 0.37 +1.3
236,925 - MPMX19_06960 0.37 -0.5
236,925 - MPMX19_06960 0.37 +0.4
236,925 - MPMX19_06960 0.37 +0.1
236,925 - MPMX19_06960 0.37 -0.7
236,925 - MPMX19_06960 0.37 +0.5
236,925 - MPMX19_06960 0.37 +0.5
236,925 - MPMX19_06960 0.37 +0.7
236,925 - MPMX19_06960 0.37 +0.2
236,925 - MPMX19_06960 0.37 +0.2
236,925 - MPMX19_06960 0.37 -0.1
236,925 - MPMX19_06960 0.37 +1.2
236,994 - MPMX19_06960 0.42 -1.8
237,056 + MPMX19_06960 0.46 -0.8
237,056 + MPMX19_06960 0.46 -0.9
237,056 + MPMX19_06960 0.46 -0.1
237,056 + MPMX19_06960 0.46 -1.0
237,056 + MPMX19_06960 0.46 +0.4
237,056 + MPMX19_06960 0.46 -0.0
237,056 + MPMX19_06960 0.46 +0.8
237,056 + MPMX19_06960 0.46 +0.3
237,056 + MPMX19_06960 0.46 -0.4
237,056 + MPMX19_06960 0.46 +0.6
237,056 + MPMX19_06960 0.46 -0.5
237,056 + MPMX19_06960 0.46 -1.1
237,057 - MPMX19_06960 0.46 +0.3
237,057 - MPMX19_06960 0.46 +0.5
237,057 - MPMX19_06960 0.46 -0.3
237,057 - MPMX19_06960 0.46 -0.3
237,057 - MPMX19_06960 0.46 +1.2
237,057 - MPMX19_06960 0.46 -0.5
237,057 - MPMX19_06960 0.46 -0.8
237,057 - MPMX19_06960 0.46 -0.9
237,057 - MPMX19_06960 0.46 +0.7
237,057 - MPMX19_06960 0.46 +0.5
237,125 + MPMX19_06960 0.51 -1.0
237,125 + MPMX19_06960 0.51 -1.1
237,126 - MPMX19_06960 0.51 -1.0
237,126 - MPMX19_06960 0.51 -1.8
237,126 - MPMX19_06960 0.51 -0.9
237,126 - MPMX19_06960 0.51 -0.9
237,126 - MPMX19_06960 0.51 +0.7
237,126 - MPMX19_06960 0.51 -0.4
237,126 - MPMX19_06960 0.51 -0.1
237,126 - MPMX19_06960 0.51 +0.9
237,126 - MPMX19_06960 0.51 +0.6
237,126 - MPMX19_06960 0.51 -2.1
237,129 - MPMX19_06960 0.51 +0.5
237,176 + MPMX19_06960 0.54 -0.1
237,176 + MPMX19_06960 0.54 -0.2
237,176 + MPMX19_06960 0.54 +0.1
237,177 - MPMX19_06960 0.54 -1.5
237,177 - MPMX19_06960 0.54 +1.9
237,177 - MPMX19_06960 0.54 +0.0
237,437 + MPMX19_06960 0.72 +0.4
237,437 + MPMX19_06960 0.72 -1.4
237,437 + MPMX19_06960 0.72 +0.9
237,437 + MPMX19_06960 0.72 -3.0
237,437 + MPMX19_06960 0.72 +0.2
237,437 + MPMX19_06960 0.72 +0.9
237,438 - MPMX19_06960 0.72 +1.3
237,438 - MPMX19_06960 0.72 +1.5
237,438 - MPMX19_06960 0.72 -0.9
237,438 - MPMX19_06960 0.72 -1.5
237,438 - MPMX19_06960 0.72 -0.6
237,438 - MPMX19_06960 0.72 -1.1
237,554 + MPMX19_06960 0.80 +1.5
237,554 + MPMX19_06960 0.80 +0.6
237,554 + MPMX19_06960 0.80 -1.9
237,554 + MPMX19_06960 0.80 +0.7
237,555 - MPMX19_06960 0.80 -0.9
237,555 - MPMX19_06960 0.80 +0.9
237,555 - MPMX19_06960 0.80 -1.6
237,555 - MPMX19_06960 0.80 -1.2
237,555 - MPMX19_06960 0.80 -0.8
237,555 - MPMX19_06960 0.80 +1.4
237,555 - MPMX19_06960 0.80 -2.4
237,572 + MPMX19_06960 0.81 +0.2
237,572 + MPMX19_06960 0.81 +1.5
237,572 + MPMX19_06960 0.81 -1.1
237,573 - MPMX19_06960 0.81 +1.3
237,573 - MPMX19_06960 0.81 -1.2
237,681 + MPMX19_06960 0.88 +0.6
237,681 + MPMX19_06960 0.88 +1.5
237,681 + MPMX19_06960 0.88 +0.6
237,681 + MPMX19_06960 0.88 +1.6
237,683 + MPMX19_06960 0.88 -0.8
237,683 + MPMX19_06960 0.88 +1.0
237,683 + MPMX19_06960 0.88 +0.3
237,683 + MPMX19_06960 0.88 +0.2
237,683 + MPMX19_06960 0.88 +0.8
237,683 + MPMX19_06960 0.88 +1.1
237,684 - MPMX19_06960 0.88 +0.9
237,684 - MPMX19_06960 0.88 -0.8
237,684 - MPMX19_06960 0.88 -0.4
237,684 - MPMX19_06960 0.88 +0.2
237,684 - MPMX19_06960 0.88 -1.7
237,684 - MPMX19_06960 0.88 -0.3
237,684 - MPMX19_06960 0.88 +0.5
237,684 - MPMX19_06960 0.88 -0.5
237,684 - MPMX19_06960 0.88 +0.6
237,684 - MPMX19_06960 0.88 +1.3
237,684 - MPMX19_06960 0.88 -1.1
237,684 - MPMX19_06960 0.88 -1.5
237,684 - MPMX19_06960 0.88 -1.5
238,433 + MPMX19_06961 0.43 -1.7
238,433 + MPMX19_06961 0.43 -0.6
238,433 + MPMX19_06961 0.43 -0.5
238,433 + MPMX19_06961 0.43 +0.3
238,434 - MPMX19_06961 0.43 -1.7
238,497 - MPMX19_06961 0.48 -0.5
238,682 + MPMX19_06961 0.62 +0.1
238,682 + MPMX19_06961 0.62 -0.3
238,682 + MPMX19_06961 0.62 +0.1
238,682 + MPMX19_06961 0.62 +1.0
238,683 - MPMX19_06961 0.63 +1.0
238,683 - MPMX19_06961 0.63 +1.6
238,683 - MPMX19_06961 0.63 +0.2
238,683 - MPMX19_06961 0.63 -0.3
238,683 - MPMX19_06961 0.63 +0.2
238,683 - MPMX19_06961 0.63 +1.1
238,683 - MPMX19_06961 0.63 +1.3
238,683 - MPMX19_06961 0.63 -0.1
238,683 - MPMX19_06961 0.63 +0.5
238,736 + MPMX19_06961 0.67 -1.7
238,769 + MPMX19_06961 0.69 +0.8
238,769 + MPMX19_06961 0.69 +0.3
238,770 - MPMX19_06961 0.69 +1.2
238,770 - MPMX19_06961 0.69 +1.2
238,770 - MPMX19_06961 0.69 +0.8
238,770 - MPMX19_06961 0.69 -0.2
238,955 + MPMX19_06961 0.84 -0.1
238,955 + MPMX19_06961 0.84 -0.2
238,956 - MPMX19_06961 0.84 -0.5
238,956 - MPMX19_06961 0.84 +1.5
239,073 + +1.2
239,074 - -0.5
239,074 - -0.6
239,203 + -0.1
239,203 + -0.3
239,543 + MPMX19_06962 0.46 -2.1
239,543 + MPMX19_06962 0.46 +0.3
239,647 + MPMX19_06962 0.58 +0.2
239,648 - MPMX19_06962 0.58 +0.4
239,648 - MPMX19_06962 0.58 -1.7
239,648 - MPMX19_06962 0.58 +0.9
239,904 + MPMX19_06962 0.87 +0.2
239,904 + MPMX19_06962 0.87 +0.8
239,904 + MPMX19_06962 0.87 -0.5
239,904 + MPMX19_06962 0.87 -0.4
239,904 + MPMX19_06962 0.87 -0.5
239,904 + MPMX19_06962 0.87 -0.8
239,904 + MPMX19_06962 0.87 -0.8
239,905 - MPMX19_06962 0.87 -1.2
239,905 - MPMX19_06962 0.87 -0.9
239,905 - MPMX19_06962 0.87 +1.5
239,905 - MPMX19_06962 0.87 +1.2
239,905 - MPMX19_06962 0.87 -0.6
240,120 + +1.0
240,120 + -0.2
240,120 + -0.4
240,121 - -1.1
240,121 - -1.2
240,121 - -0.3
240,121 - +0.8
240,121 - -0.7

Or see this region's nucleotide sequence