Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05807 and MPMX19_05808 are separated by 41 nucleotides MPMX19_05808 and MPMX19_05809 are separated by 17 nucleotides
MPMX19_05807: MPMX19_05807 - N-carbamoyl-L-amino-acid hydrolase, at 532,801 to 534,069
_05807
MPMX19_05808: MPMX19_05808 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreA, at 534,111 to 535,394
_05808
MPMX19_05809: MPMX19_05809 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreT, at 535,412 to 536,722
_05809
Position (kb) 534
535
536 Strain fitness (log2 ratio) -2
-1
0
1
2 at 533.294 kb on + strand, within MPMX19_05807 at 533.294 kb on + strand, within MPMX19_05807 at 533.294 kb on + strand, within MPMX19_05807 at 533.294 kb on + strand, within MPMX19_05807 at 533.294 kb on + strand, within MPMX19_05807 at 533.295 kb on - strand, within MPMX19_05807 at 533.295 kb on - strand, within MPMX19_05807 at 533.295 kb on - strand, within MPMX19_05807 at 533.295 kb on - strand, within MPMX19_05807 at 533.295 kb on - strand, within MPMX19_05807 at 533.295 kb on - strand, within MPMX19_05807 at 533.414 kb on + strand, within MPMX19_05807 at 533.414 kb on + strand, within MPMX19_05807 at 533.414 kb on + strand, within MPMX19_05807 at 533.414 kb on + strand, within MPMX19_05807 at 533.414 kb on + strand, within MPMX19_05807 at 533.415 kb on - strand, within MPMX19_05807 at 533.415 kb on - strand, within MPMX19_05807 at 533.415 kb on - strand, within MPMX19_05807 at 533.504 kb on + strand, within MPMX19_05807 at 533.504 kb on + strand, within MPMX19_05807 at 533.504 kb on + strand, within MPMX19_05807 at 533.505 kb on - strand, within MPMX19_05807 at 533.546 kb on + strand, within MPMX19_05807 at 533.546 kb on + strand, within MPMX19_05807 at 533.547 kb on - strand, within MPMX19_05807 at 533.609 kb on + strand, within MPMX19_05807 at 533.609 kb on + strand, within MPMX19_05807 at 533.610 kb on - strand, within MPMX19_05807 at 533.610 kb on - strand, within MPMX19_05807 at 533.610 kb on - strand, within MPMX19_05807 at 533.610 kb on - strand, within MPMX19_05807 at 533.610 kb on - strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.771 kb on + strand, within MPMX19_05807 at 533.771 kb on + strand, within MPMX19_05807 at 533.772 kb on - strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 534.096 kb on + strand at 534.097 kb on - strand at 534.097 kb on - strand at 534.097 kb on - strand at 534.112 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.170 kb on - strand at 534.170 kb on - strand at 534.170 kb on - strand at 534.170 kb on - strand at 534.170 kb on - strand at 534.170 kb on - strand at 534.170 kb on - strand at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.703 kb on + strand, within MPMX19_05808 at 534.703 kb on + strand, within MPMX19_05808 at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.539 kb on + strand at 535.539 kb on + strand at 535.540 kb on - strand at 535.540 kb on - strand at 535.818 kb on + strand, within MPMX19_05809 at 535.818 kb on + strand, within MPMX19_05809 at 535.819 kb on - strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.176 kb on - strand, within MPMX19_05809 at 536.176 kb on - strand, within MPMX19_05809 at 536.190 kb on + strand, within MPMX19_05809 at 536.190 kb on + strand, within MPMX19_05809 at 536.191 kb on - strand, within MPMX19_05809 at 536.191 kb on - strand, within MPMX19_05809
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 533,294 + MPMX19_05807 0.39 +0.6 533,294 + MPMX19_05807 0.39 -2.6 533,294 + MPMX19_05807 0.39 +0.1 533,294 + MPMX19_05807 0.39 +0.0 533,294 + MPMX19_05807 0.39 -0.5 533,295 - MPMX19_05807 0.39 +0.0 533,295 - MPMX19_05807 0.39 +0.4 533,295 - MPMX19_05807 0.39 -0.5 533,295 - MPMX19_05807 0.39 -1.8 533,295 - MPMX19_05807 0.39 -0.6 533,295 - MPMX19_05807 0.39 -1.2 533,414 + MPMX19_05807 0.48 -0.6 533,414 + MPMX19_05807 0.48 -0.6 533,414 + MPMX19_05807 0.48 +1.1 533,414 + MPMX19_05807 0.48 -0.3 533,414 + MPMX19_05807 0.48 +1.9 533,415 - MPMX19_05807 0.48 +0.1 533,415 - MPMX19_05807 0.48 -0.7 533,415 - MPMX19_05807 0.48 -0.4 533,504 + MPMX19_05807 0.55 -1.1 533,504 + MPMX19_05807 0.55 -1.1 533,504 + MPMX19_05807 0.55 -0.6 533,505 - MPMX19_05807 0.55 +1.7 533,546 + MPMX19_05807 0.59 -1.4 533,546 + MPMX19_05807 0.59 -0.2 533,547 - MPMX19_05807 0.59 +1.0 533,609 + MPMX19_05807 0.64 +0.9 533,609 + MPMX19_05807 0.64 +1.6 533,610 - MPMX19_05807 0.64 +0.6 533,610 - MPMX19_05807 0.64 -0.1 533,610 - MPMX19_05807 0.64 +0.0 533,610 - MPMX19_05807 0.64 -1.3 533,610 - MPMX19_05807 0.64 -0.5 533,720 + MPMX19_05807 0.72 -2.1 533,720 + MPMX19_05807 0.72 +0.9 533,720 + MPMX19_05807 0.72 +1.0 533,720 + MPMX19_05807 0.72 -0.6 533,720 + MPMX19_05807 0.72 -1.0 533,720 + MPMX19_05807 0.72 -0.3 533,720 + MPMX19_05807 0.72 -1.0 533,720 + MPMX19_05807 0.72 -1.2 533,720 + MPMX19_05807 0.72 -0.5 533,720 + MPMX19_05807 0.72 +1.1 533,720 + MPMX19_05807 0.72 +0.3 533,720 + MPMX19_05807 0.72 -0.1 533,720 + MPMX19_05807 0.72 +0.2 533,720 + MPMX19_05807 0.72 +0.8 533,720 + MPMX19_05807 0.72 -1.2 533,720 + MPMX19_05807 0.72 +0.0 533,720 + MPMX19_05807 0.72 +1.3 533,721 - MPMX19_05807 0.72 -1.6 533,721 - MPMX19_05807 0.72 +0.6 533,721 - MPMX19_05807 0.72 -0.9 533,721 - MPMX19_05807 0.72 -0.6 533,721 - MPMX19_05807 0.72 +0.3 533,721 - MPMX19_05807 0.72 +0.9 533,721 - MPMX19_05807 0.72 -1.0 533,721 - MPMX19_05807 0.72 +0.4 533,721 - MPMX19_05807 0.72 -0.6 533,721 - MPMX19_05807 0.72 -0.3 533,721 - MPMX19_05807 0.72 -1.9 533,721 - MPMX19_05807 0.72 +0.7 533,721 - MPMX19_05807 0.72 -0.3 533,721 - MPMX19_05807 0.72 +0.1 533,721 - MPMX19_05807 0.72 +1.3 533,721 - MPMX19_05807 0.72 -0.4 533,721 - MPMX19_05807 0.72 -0.8 533,721 - MPMX19_05807 0.72 -1.1 533,721 - MPMX19_05807 0.72 -1.0 533,721 - MPMX19_05807 0.72 -0.5 533,771 + MPMX19_05807 0.76 +0.9 533,771 + MPMX19_05807 0.76 +0.4 533,772 - MPMX19_05807 0.77 -0.5 533,783 + MPMX19_05807 0.77 +0.9 533,783 + MPMX19_05807 0.77 -0.5 533,783 + MPMX19_05807 0.77 -1.2 533,783 + MPMX19_05807 0.77 +0.0 533,783 + MPMX19_05807 0.77 -1.2 533,783 + MPMX19_05807 0.77 -0.1 533,783 + MPMX19_05807 0.77 -0.6 533,783 + MPMX19_05807 0.77 +0.2 533,783 + MPMX19_05807 0.77 -0.5 533,784 - MPMX19_05807 0.77 -0.6 533,784 - MPMX19_05807 0.77 -0.6 533,784 - MPMX19_05807 0.77 +0.6 533,784 - MPMX19_05807 0.77 -0.8 533,784 - MPMX19_05807 0.77 -1.2 533,784 - MPMX19_05807 0.77 -1.8 533,784 - MPMX19_05807 0.77 +1.6 533,784 - MPMX19_05807 0.77 -0.2 533,784 - MPMX19_05807 0.77 -0.7 533,784 - MPMX19_05807 0.77 +1.0 534,096 + -1.7 534,097 - +0.6 534,097 - -0.6 534,097 - -0.3 534,112 + -1.1 534,169 + -0.7 534,169 + -0.4 534,169 + -0.1 534,169 + +0.3 534,169 + +0.9 534,169 + +0.0 534,169 + +0.1 534,169 + +0.3 534,169 + -1.1 534,169 + +0.6 534,169 + +0.5 534,169 + +0.5 534,170 - +0.6 534,170 - +0.8 534,170 - -0.6 534,170 - +1.6 534,170 - -1.1 534,170 - -0.8 534,170 - -1.2 534,526 + MPMX19_05808 0.32 -2.4 534,526 + MPMX19_05808 0.32 -1.6 534,526 + MPMX19_05808 0.32 -1.2 534,526 + MPMX19_05808 0.32 -1.7 534,526 + MPMX19_05808 0.32 -1.0 534,526 + MPMX19_05808 0.32 -0.5 534,526 + MPMX19_05808 0.32 +0.3 534,527 - MPMX19_05808 0.32 -1.2 534,527 - MPMX19_05808 0.32 -1.0 534,527 - MPMX19_05808 0.32 -0.5 534,527 - MPMX19_05808 0.32 -0.6 534,527 - MPMX19_05808 0.32 -1.3 534,527 - MPMX19_05808 0.32 -0.7 534,527 - MPMX19_05808 0.32 -0.3 534,527 - MPMX19_05808 0.32 -0.7 534,527 - MPMX19_05808 0.32 -0.6 534,527 - MPMX19_05808 0.32 +1.4 534,527 - MPMX19_05808 0.32 +0.3 534,527 - MPMX19_05808 0.32 -0.6 534,527 - MPMX19_05808 0.32 -1.5 534,703 + MPMX19_05808 0.46 -0.2 534,703 + MPMX19_05808 0.46 -1.0 535,309 + -0.9 535,309 + -0.6 535,309 + +0.1 535,309 + -0.4 535,309 + +1.0 535,309 + -1.6 535,309 + -0.3 535,309 + -0.7 535,309 + +0.3 535,309 + -1.1 535,309 + -0.1 535,309 + +1.6 535,310 - -0.6 535,310 - +0.5 535,310 - -1.4 535,310 - +1.9 535,310 - -1.7 535,310 - -0.7 535,310 - +0.4 535,310 - +0.2 535,310 - +1.4 535,310 - -0.3 535,310 - -1.6 535,539 + +0.7 535,539 + +1.3 535,540 - -1.0 535,540 - -0.3 535,818 + MPMX19_05809 0.31 -1.6 535,818 + MPMX19_05809 0.31 -0.4 535,819 - MPMX19_05809 0.31 +0.0 536,175 + MPMX19_05809 0.58 -0.5 536,175 + MPMX19_05809 0.58 +0.8 536,175 + MPMX19_05809 0.58 -1.6 536,175 + MPMX19_05809 0.58 -0.7 536,175 + MPMX19_05809 0.58 -0.3 536,175 + MPMX19_05809 0.58 +0.1 536,176 - MPMX19_05809 0.58 -0.5 536,176 - MPMX19_05809 0.58 -0.8 536,190 + MPMX19_05809 0.59 +0.6 536,190 + MPMX19_05809 0.59 +0.8 536,191 - MPMX19_05809 0.59 -1.5 536,191 - MPMX19_05809 0.59 -0.2
Or see this region's nucleotide sequence