Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05686 and MPMX19_05687 are separated by 90 nucleotides MPMX19_05687 and MPMX19_05688 overlap by 4 nucleotides MPMX19_05688 and MPMX19_05689 are separated by 205 nucleotides MPMX19_05689 and MPMX19_05690 are separated by 27 nucleotides
MPMX19_05686: MPMX19_05686 - Chemotaxis protein CheY, at 402,358 to 402,723
_05686
MPMX19_05687: MPMX19_05687 - Chemotaxis protein CheW, at 402,814 to 403,314
_05687
MPMX19_05688: MPMX19_05688 - Sensor histidine kinase RcsC, at 403,311 to 406,088
_05688
MPMX19_05689: MPMX19_05689 - hypothetical protein, at 406,294 to 406,467
_05689
MPMX19_05690: MPMX19_05690 - Protein phosphotransferase ChpT, at 406,495 to 407,178
_05690
Position (kb) 403
404
405
406
407 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.888 kb on + strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.891 kb on - strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.375 kb on - strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.616 kb on - strand, within MPMX19_05688 at 403.616 kb on - strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.993 kb on + strand, within MPMX19_05688 at 403.993 kb on + strand, within MPMX19_05688 at 403.993 kb on + strand, within MPMX19_05688 at 403.993 kb on + strand, within MPMX19_05688 at 403.994 kb on - strand, within MPMX19_05688 at 403.994 kb on - strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.356 kb on + strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.357 kb on - strand, within MPMX19_05688 at 404.883 kb on - strand, within MPMX19_05688 at 404.927 kb on - strand, within MPMX19_05688 at 406.113 kb on + strand at 406.113 kb on + strand at 406.113 kb on + strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.465 kb on + strand at 406.465 kb on + strand at 406.465 kb on + strand at 406.465 kb on + strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.872 kb on - strand, within MPMX19_05690 at 406.872 kb on - strand, within MPMX19_05690 at 406.872 kb on - strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 402,422 + MPMX19_05686 0.17 +0.5 402,422 + MPMX19_05686 0.17 +1.2 402,422 + MPMX19_05686 0.17 +0.6 402,422 + MPMX19_05686 0.17 -0.8 402,422 + MPMX19_05686 0.17 +0.3 402,422 + MPMX19_05686 0.17 -0.9 402,423 - MPMX19_05686 0.18 +1.8 402,423 - MPMX19_05686 0.18 +1.1 402,423 - MPMX19_05686 0.18 +1.7 402,423 - MPMX19_05686 0.18 +0.1 402,423 - MPMX19_05686 0.18 +0.2 402,423 - MPMX19_05686 0.18 +0.6 402,888 + MPMX19_05687 0.15 +1.6 402,889 - MPMX19_05687 0.15 +0.6 402,889 - MPMX19_05687 0.15 +0.2 402,889 - MPMX19_05687 0.15 +0.7 402,890 + MPMX19_05687 0.15 +2.3 402,890 + MPMX19_05687 0.15 +1.3 402,890 + MPMX19_05687 0.15 -1.3 402,890 + MPMX19_05687 0.15 -0.3 402,891 - MPMX19_05687 0.15 +1.0 403,001 + MPMX19_05687 0.37 +1.1 403,001 + MPMX19_05687 0.37 -0.2 403,001 + MPMX19_05687 0.37 +0.8 403,001 + MPMX19_05687 0.37 +0.7 403,001 + MPMX19_05687 0.37 +1.8 403,001 + MPMX19_05687 0.37 +0.9 403,002 - MPMX19_05687 0.38 -0.7 403,002 - MPMX19_05687 0.38 +0.6 403,002 - MPMX19_05687 0.38 +0.5 403,002 - MPMX19_05687 0.38 +1.2 403,002 - MPMX19_05687 0.38 +0.8 403,002 - MPMX19_05687 0.38 +1.1 403,375 - +0.4 403,387 + +0.8 403,387 + +2.3 403,387 + +1.4 403,387 + +1.3 403,387 + +1.3 403,387 + +0.7 403,387 + +1.1 403,387 + +1.0 403,387 + +0.8 403,387 + +0.8 403,387 + -0.2 403,387 + +1.6 403,387 + +1.3 403,387 + +0.6 403,387 + +1.5 403,387 + +1.8 403,387 + +0.3 403,387 + +1.1 403,387 + +0.4 403,387 + +1.1 403,388 - +0.6 403,388 - +0.4 403,388 - +0.5 403,388 - +1.0 403,388 - +0.7 403,388 - +2.5 403,388 - -0.6 403,388 - +0.3 403,388 - +0.9 403,388 - +1.4 403,388 - -0.1 403,388 - +0.4 403,388 - +0.6 403,388 - -0.0 403,388 - +2.3 403,388 - +0.7 403,388 - -1.2 403,616 - MPMX19_05688 0.11 +0.8 403,616 - MPMX19_05688 0.11 -0.4 403,741 + MPMX19_05688 0.15 +0.2 403,741 + MPMX19_05688 0.15 +1.0 403,741 + MPMX19_05688 0.15 +1.4 403,741 + MPMX19_05688 0.15 -1.0 403,741 + MPMX19_05688 0.15 +1.6 403,741 + MPMX19_05688 0.15 +1.1 403,741 + MPMX19_05688 0.15 +1.3 403,741 + MPMX19_05688 0.15 +2.3 403,742 - MPMX19_05688 0.16 +1.1 403,742 - MPMX19_05688 0.16 +1.6 403,742 - MPMX19_05688 0.16 +1.0 403,742 - MPMX19_05688 0.16 +0.8 403,742 - MPMX19_05688 0.16 +1.4 403,742 - MPMX19_05688 0.16 -0.3 403,742 - MPMX19_05688 0.16 +0.4 403,742 - MPMX19_05688 0.16 +0.3 403,742 - MPMX19_05688 0.16 +1.1 403,742 - MPMX19_05688 0.16 +0.7 403,742 - MPMX19_05688 0.16 +1.7 403,742 - MPMX19_05688 0.16 +0.2 403,993 + MPMX19_05688 0.25 +0.8 403,993 + MPMX19_05688 0.25 +0.3 403,993 + MPMX19_05688 0.25 +1.6 403,993 + MPMX19_05688 0.25 +1.6 403,994 - MPMX19_05688 0.25 +0.4 403,994 - MPMX19_05688 0.25 -1.6 404,356 + MPMX19_05688 0.38 -0.1 404,356 + MPMX19_05688 0.38 -0.2 404,356 + MPMX19_05688 0.38 -0.5 404,356 + MPMX19_05688 0.38 +0.8 404,356 + MPMX19_05688 0.38 +0.2 404,356 + MPMX19_05688 0.38 +0.6 404,356 + MPMX19_05688 0.38 +0.6 404,356 + MPMX19_05688 0.38 +1.2 404,356 + MPMX19_05688 0.38 +1.5 404,356 + MPMX19_05688 0.38 +0.7 404,357 - MPMX19_05688 0.38 +0.8 404,357 - MPMX19_05688 0.38 -0.3 404,357 - MPMX19_05688 0.38 +0.5 404,357 - MPMX19_05688 0.38 +0.2 404,357 - MPMX19_05688 0.38 +0.9 404,357 - MPMX19_05688 0.38 -0.3 404,357 - MPMX19_05688 0.38 -0.4 404,357 - MPMX19_05688 0.38 +0.1 404,357 - MPMX19_05688 0.38 +0.8 404,357 - MPMX19_05688 0.38 +0.8 404,357 - MPMX19_05688 0.38 +0.1 404,357 - MPMX19_05688 0.38 +0.2 404,357 - MPMX19_05688 0.38 -1.2 404,883 - MPMX19_05688 0.57 +0.4 404,927 - MPMX19_05688 0.58 +1.6 406,113 + +2.1 406,113 + +0.9 406,113 + -0.2 406,114 - -0.6 406,114 - +0.3 406,114 - -1.9 406,114 - -0.1 406,114 - +0.7 406,114 - -0.0 406,114 - +0.4 406,114 - -0.6 406,114 - -1.0 406,182 + +1.7 406,182 + +0.6 406,182 + -0.2 406,182 + -0.4 406,182 + +0.8 406,182 + +1.2 406,183 - -0.2 406,183 - -1.6 406,183 - -0.4 406,183 - +0.5 406,183 - +0.8 406,183 - -0.4 406,183 - +0.2 406,209 + -0.6 406,209 + -0.4 406,209 + +1.2 406,209 + +0.2 406,209 + +0.4 406,209 + +0.8 406,210 - -0.4 406,210 - -0.8 406,210 - +1.0 406,210 - +0.1 406,210 - -0.8 406,210 - -0.5 406,210 - -0.2 406,220 + -1.1 406,220 + +0.6 406,220 + -0.3 406,220 + -0.7 406,220 + -1.3 406,220 + -0.2 406,220 + -2.4 406,220 + -0.1 406,220 + -0.9 406,220 + +1.3 406,220 + -0.8 406,220 + -1.1 406,220 + -0.7 406,220 + -0.3 406,220 + -0.8 406,220 + -0.9 406,220 + -0.7 406,220 + -0.2 406,221 - -2.0 406,221 - -0.9 406,221 - -0.6 406,221 - +0.1 406,221 - -1.3 406,221 - -0.7 406,221 - -1.0 406,221 - +0.1 406,221 - +0.2 406,221 - -0.4 406,221 - -1.9 406,221 - -0.6 406,221 - -0.0 406,221 - -1.2 406,221 - -1.3 406,221 - -0.0 406,221 - -0.3 406,465 + +0.5 406,465 + -0.9 406,465 + +0.4 406,465 + -0.9 406,466 - +0.2 406,466 - +1.0 406,466 - -0.7 406,466 - -1.2 406,466 - -0.1 406,466 - -0.3 406,466 - -0.3 406,466 - +0.3 406,466 - -0.0 406,586 + MPMX19_05690 0.13 +1.2 406,586 + MPMX19_05690 0.13 +1.2 406,586 + MPMX19_05690 0.13 +1.5 406,586 + MPMX19_05690 0.13 +1.0 406,586 + MPMX19_05690 0.13 +0.3 406,586 + MPMX19_05690 0.13 -1.2 406,586 + MPMX19_05690 0.13 +0.1 406,587 - MPMX19_05690 0.13 +2.0 406,587 - MPMX19_05690 0.13 +2.2 406,587 - MPMX19_05690 0.13 +1.2 406,587 - MPMX19_05690 0.13 +0.8 406,587 - MPMX19_05690 0.13 +1.0 406,587 - MPMX19_05690 0.13 +1.4 406,587 - MPMX19_05690 0.13 +0.9 406,587 - MPMX19_05690 0.13 +0.6 406,587 - MPMX19_05690 0.13 +1.5 406,587 - MPMX19_05690 0.13 +1.0 406,871 + MPMX19_05690 0.55 +1.7 406,871 + MPMX19_05690 0.55 +1.2 406,871 + MPMX19_05690 0.55 +1.2 406,871 + MPMX19_05690 0.55 +0.8 406,871 + MPMX19_05690 0.55 +0.9 406,871 + MPMX19_05690 0.55 +1.6 406,872 - MPMX19_05690 0.55 +0.8 406,872 - MPMX19_05690 0.55 +2.8 406,872 - MPMX19_05690 0.55 +1.3 406,931 + MPMX19_05690 0.64 +0.9 406,931 + MPMX19_05690 0.64 -0.2 406,931 + MPMX19_05690 0.64 +1.7 406,931 + MPMX19_05690 0.64 +1.8 406,931 + MPMX19_05690 0.64 +1.0 406,931 + MPMX19_05690 0.64 +2.1 406,931 + MPMX19_05690 0.64 +1.4 406,931 + MPMX19_05690 0.64 +0.1 406,932 - MPMX19_05690 0.64 +2.3 406,932 - MPMX19_05690 0.64 +0.8 406,932 - MPMX19_05690 0.64 +1.8 406,932 - MPMX19_05690 0.64 +0.7 406,932 - MPMX19_05690 0.64 +0.9 406,932 - MPMX19_05690 0.64 +1.3 406,932 - MPMX19_05690 0.64 +1.9 406,932 - MPMX19_05690 0.64 +1.7
Or see this region's nucleotide sequence