Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05558

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05556 and MPMX19_05557 overlap by 4 nucleotidesMPMX19_05557 and MPMX19_05558 overlap by 4 nucleotidesMPMX19_05558 and MPMX19_05559 overlap by 4 nucleotides MPMX19_05556: MPMX19_05556 - hypothetical protein, at 265,235 to 265,858 _05556 MPMX19_05557: MPMX19_05557 - Chemotaxis protein methyltransferase Cher2, at 265,855 to 266,742 _05557 MPMX19_05558: MPMX19_05558 - Chemotaxis protein CheY, at 266,739 to 267,164 _05558 MPMX19_05559: MPMX19_05559 - hypothetical protein, at 267,161 to 269,395 _05559 Position (kb) 266 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.966 kb on + strand, within MPMX19_05557at 265.966 kb on + strand, within MPMX19_05557at 265.966 kb on + strand, within MPMX19_05557at 265.967 kb on - strand, within MPMX19_05557at 265.967 kb on - strand, within MPMX19_05557at 265.967 kb on - strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.125 kb on + strand, within MPMX19_05557at 266.125 kb on + strand, within MPMX19_05557at 266.125 kb on + strand, within MPMX19_05557at 266.125 kb on + strand, within MPMX19_05557at 266.125 kb on + strand, within MPMX19_05557at 266.125 kb on + strand, within MPMX19_05557at 266.126 kb on - strand, within MPMX19_05557at 266.126 kb on - strand, within MPMX19_05557at 266.126 kb on - strand, within MPMX19_05557at 266.126 kb on - strand, within MPMX19_05557at 266.126 kb on - strand, within MPMX19_05557at 266.126 kb on - strand, within MPMX19_05557at 266.236 kb on + strand, within MPMX19_05557at 266.236 kb on + strand, within MPMX19_05557at 266.236 kb on + strand, within MPMX19_05557at 266.236 kb on + strand, within MPMX19_05557at 266.236 kb on + strand, within MPMX19_05557at 266.236 kb on + strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.237 kb on - strand, within MPMX19_05557at 266.284 kb on + strand, within MPMX19_05557at 266.285 kb on - strand, within MPMX19_05557at 266.285 kb on - strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.350 kb on + strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.351 kb on - strand, within MPMX19_05557at 266.398 kb on + strand, within MPMX19_05557at 266.399 kb on - strand, within MPMX19_05557at 266.399 kb on - strand, within MPMX19_05557at 266.399 kb on - strand, within MPMX19_05557at 266.399 kb on - strand, within MPMX19_05557at 266.399 kb on - strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.563 kb on + strand, within MPMX19_05557at 266.564 kb on - strand, within MPMX19_05557at 266.564 kb on - strand, within MPMX19_05557at 266.564 kb on - strand, within MPMX19_05557at 266.564 kb on - strand, within MPMX19_05557at 266.564 kb on - strand, within MPMX19_05557at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.955 kb on + strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 266.956 kb on - strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.075 kb on + strand, within MPMX19_05558at 267.076 kb on - strand, within MPMX19_05558at 267.076 kb on - strand, within MPMX19_05558at 267.076 kb on - strand, within MPMX19_05558at 267.656 kb on + strand, within MPMX19_05559at 267.656 kb on + strand, within MPMX19_05559at 267.656 kb on + strand, within MPMX19_05559at 267.657 kb on - strand, within MPMX19_05559at 267.657 kb on - strand, within MPMX19_05559at 267.657 kb on - strand, within MPMX19_05559at 267.786 kb on - strand, within MPMX19_05559

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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265,903 + +0.0
265,903 + +0.0
265,903 + +0.4
265,903 + +0.0
265,903 + -1.0
265,903 + +1.6
265,903 + +0.6
265,903 + -0.2
265,903 + -0.3
265,903 + +1.0
265,904 - -0.5
265,904 - +0.6
265,904 - -0.5
265,904 - -1.0
265,904 - -1.0
265,904 - +0.0
265,904 - -1.0
265,904 - +0.0
265,904 - -1.5
265,966 + MPMX19_05557 0.12 -0.7
265,966 + MPMX19_05557 0.12 +2.2
265,966 + MPMX19_05557 0.12 +1.3
265,967 - MPMX19_05557 0.13 +0.6
265,967 - MPMX19_05557 0.13 +0.1
265,967 - MPMX19_05557 0.13 +0.3
265,969 + MPMX19_05557 0.13 +0.1
265,969 + MPMX19_05557 0.13 -1.4
265,969 + MPMX19_05557 0.13 -1.2
265,969 + MPMX19_05557 0.13 +0.2
265,969 + MPMX19_05557 0.13 +0.1
265,969 + MPMX19_05557 0.13 +1.2
265,969 + MPMX19_05557 0.13 -1.9
265,969 + MPMX19_05557 0.13 +1.1
265,970 - MPMX19_05557 0.13 -0.9
265,970 - MPMX19_05557 0.13 +1.0
265,970 - MPMX19_05557 0.13 -0.4
265,970 - MPMX19_05557 0.13 -2.2
265,970 - MPMX19_05557 0.13 -0.1
265,970 - MPMX19_05557 0.13 -1.6
265,970 - MPMX19_05557 0.13 +0.2
265,970 - MPMX19_05557 0.13 -0.7
265,970 - MPMX19_05557 0.13 +1.0
265,970 - MPMX19_05557 0.13 -1.7
266,029 + MPMX19_05557 0.20 +0.5
266,029 + MPMX19_05557 0.20 -0.6
266,029 + MPMX19_05557 0.20 -0.3
266,029 + MPMX19_05557 0.20 +0.2
266,029 + MPMX19_05557 0.20 -1.6
266,029 + MPMX19_05557 0.20 -0.7
266,029 + MPMX19_05557 0.20 +0.9
266,029 + MPMX19_05557 0.20 -0.8
266,029 + MPMX19_05557 0.20 +0.1
266,029 + MPMX19_05557 0.20 -1.4
266,029 + MPMX19_05557 0.20 +0.9
266,030 - MPMX19_05557 0.20 +0.2
266,030 - MPMX19_05557 0.20 -0.2
266,030 - MPMX19_05557 0.20 -2.2
266,030 - MPMX19_05557 0.20 -0.6
266,030 - MPMX19_05557 0.20 -0.0
266,030 - MPMX19_05557 0.20 -0.4
266,030 - MPMX19_05557 0.20 +1.1
266,107 + MPMX19_05557 0.28 -0.2
266,107 + MPMX19_05557 0.28 +1.0
266,107 + MPMX19_05557 0.28 -0.7
266,107 + MPMX19_05557 0.28 +1.1
266,107 + MPMX19_05557 0.28 +0.8
266,107 + MPMX19_05557 0.28 -1.0
266,107 + MPMX19_05557 0.28 -0.3
266,107 + MPMX19_05557 0.28 +0.0
266,107 + MPMX19_05557 0.28 +1.0
266,107 + MPMX19_05557 0.28 -1.0
266,108 - MPMX19_05557 0.28 +0.5
266,108 - MPMX19_05557 0.28 -1.5
266,108 - MPMX19_05557 0.28 -0.8
266,108 - MPMX19_05557 0.28 +0.5
266,108 - MPMX19_05557 0.28 -0.2
266,108 - MPMX19_05557 0.28 +1.3
266,108 - MPMX19_05557 0.28 -2.1
266,108 - MPMX19_05557 0.28 -0.5
266,125 + MPMX19_05557 0.30 +0.0
266,125 + MPMX19_05557 0.30 +0.6
266,125 + MPMX19_05557 0.30 +0.8
266,125 + MPMX19_05557 0.30 -0.3
266,125 + MPMX19_05557 0.30 -0.3
266,125 + MPMX19_05557 0.30 -0.2
266,126 - MPMX19_05557 0.31 -0.1
266,126 - MPMX19_05557 0.31 -2.0
266,126 - MPMX19_05557 0.31 -1.1
266,126 - MPMX19_05557 0.31 -1.0
266,126 - MPMX19_05557 0.31 -1.7
266,126 - MPMX19_05557 0.31 -0.9
266,236 + MPMX19_05557 0.43 -2.1
266,236 + MPMX19_05557 0.43 -0.5
266,236 + MPMX19_05557 0.43 -0.4
266,236 + MPMX19_05557 0.43 -0.1
266,236 + MPMX19_05557 0.43 -0.4
266,236 + MPMX19_05557 0.43 +0.5
266,237 - MPMX19_05557 0.43 -0.6
266,237 - MPMX19_05557 0.43 -0.5
266,237 - MPMX19_05557 0.43 +0.6
266,237 - MPMX19_05557 0.43 +0.0
266,237 - MPMX19_05557 0.43 -0.6
266,237 - MPMX19_05557 0.43 +0.8
266,237 - MPMX19_05557 0.43 +0.6
266,237 - MPMX19_05557 0.43 +0.5
266,284 + MPMX19_05557 0.48 +1.3
266,285 - MPMX19_05557 0.48 -0.9
266,285 - MPMX19_05557 0.48 -1.0
266,350 + MPMX19_05557 0.56 -0.4
266,350 + MPMX19_05557 0.56 -1.9
266,350 + MPMX19_05557 0.56 -0.3
266,350 + MPMX19_05557 0.56 -0.9
266,350 + MPMX19_05557 0.56 +0.2
266,350 + MPMX19_05557 0.56 +0.1
266,350 + MPMX19_05557 0.56 -0.5
266,350 + MPMX19_05557 0.56 -0.1
266,350 + MPMX19_05557 0.56 +0.4
266,350 + MPMX19_05557 0.56 -0.4
266,350 + MPMX19_05557 0.56 -1.7
266,350 + MPMX19_05557 0.56 +0.6
266,350 + MPMX19_05557 0.56 +0.9
266,350 + MPMX19_05557 0.56 -1.0
266,350 + MPMX19_05557 0.56 -0.1
266,351 - MPMX19_05557 0.56 -0.4
266,351 - MPMX19_05557 0.56 -0.2
266,351 - MPMX19_05557 0.56 -1.2
266,351 - MPMX19_05557 0.56 -0.9
266,351 - MPMX19_05557 0.56 -0.5
266,351 - MPMX19_05557 0.56 +1.0
266,351 - MPMX19_05557 0.56 +0.2
266,351 - MPMX19_05557 0.56 -1.8
266,351 - MPMX19_05557 0.56 -1.2
266,351 - MPMX19_05557 0.56 +0.9
266,351 - MPMX19_05557 0.56 -1.0
266,398 + MPMX19_05557 0.61 -0.8
266,399 - MPMX19_05557 0.61 -1.6
266,399 - MPMX19_05557 0.61 +0.8
266,399 - MPMX19_05557 0.61 -0.0
266,399 - MPMX19_05557 0.61 +0.9
266,399 - MPMX19_05557 0.61 -1.6
266,563 + MPMX19_05557 0.80 +0.4
266,563 + MPMX19_05557 0.80 -0.4
266,563 + MPMX19_05557 0.80 +0.8
266,563 + MPMX19_05557 0.80 -0.0
266,563 + MPMX19_05557 0.80 +0.0
266,563 + MPMX19_05557 0.80 +0.5
266,563 + MPMX19_05557 0.80 +0.3
266,564 - MPMX19_05557 0.80 +1.3
266,564 - MPMX19_05557 0.80 +0.9
266,564 - MPMX19_05557 0.80 -0.2
266,564 - MPMX19_05557 0.80 +0.0
266,564 - MPMX19_05557 0.80 -0.1
266,955 + MPMX19_05558 0.51 -1.0
266,955 + MPMX19_05558 0.51 -0.9
266,955 + MPMX19_05558 0.51 +0.3
266,955 + MPMX19_05558 0.51 -2.3
266,955 + MPMX19_05558 0.51 +0.3
266,955 + MPMX19_05558 0.51 -0.7
266,955 + MPMX19_05558 0.51 -1.6
266,955 + MPMX19_05558 0.51 -2.1
266,956 - MPMX19_05558 0.51 -0.4
266,956 - MPMX19_05558 0.51 +0.2
266,956 - MPMX19_05558 0.51 +0.2
266,956 - MPMX19_05558 0.51 +0.4
266,956 - MPMX19_05558 0.51 -1.3
266,956 - MPMX19_05558 0.51 +0.0
266,956 - MPMX19_05558 0.51 -1.9
266,956 - MPMX19_05558 0.51 -0.8
266,956 - MPMX19_05558 0.51 -2.7
266,956 - MPMX19_05558 0.51 +0.4
267,075 + MPMX19_05558 0.79 -1.7
267,075 + MPMX19_05558 0.79 +0.6
267,075 + MPMX19_05558 0.79 +0.4
267,075 + MPMX19_05558 0.79 -0.8
267,075 + MPMX19_05558 0.79 -0.9
267,075 + MPMX19_05558 0.79 +0.1
267,075 + MPMX19_05558 0.79 +1.0
267,075 + MPMX19_05558 0.79 +1.6
267,075 + MPMX19_05558 0.79 -1.1
267,076 - MPMX19_05558 0.79 -2.4
267,076 - MPMX19_05558 0.79 -1.5
267,076 - MPMX19_05558 0.79 +1.6
267,656 + MPMX19_05559 0.22 +0.2
267,656 + MPMX19_05559 0.22 -1.7
267,656 + MPMX19_05559 0.22 +0.6
267,657 - MPMX19_05559 0.22 -2.8
267,657 - MPMX19_05559 0.22 -0.1
267,657 - MPMX19_05559 0.22 -0.6
267,786 - MPMX19_05559 0.28 -2.0

Or see this region's nucleotide sequence