Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04738 and MPMX19_04739 overlap by 19 nucleotides MPMX19_04739 and MPMX19_04740 are separated by 50 nucleotides
MPMX19_04738: MPMX19_04738 - hypothetical protein, at 128,663 to 129,841
_04738
MPMX19_04739: MPMX19_04739 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 129,823 to 130,725
_04739
MPMX19_04740: MPMX19_04740 - hypothetical protein, at 130,776 to 131,810
_04740
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1 at 128.907 kb on + strand, within MPMX19_04738 at 128.908 kb on - strand, within MPMX19_04738 at 129.327 kb on + strand, within MPMX19_04738 at 129.327 kb on + strand, within MPMX19_04738 at 129.328 kb on - strand, within MPMX19_04738 at 129.328 kb on - strand, within MPMX19_04738 at 129.328 kb on - strand, within MPMX19_04738 at 129.328 kb on - strand, within MPMX19_04738 at 129.881 kb on + strand at 129.881 kb on + strand at 129.881 kb on + strand at 129.881 kb on + strand at 129.882 kb on - strand at 129.882 kb on - strand at 129.882 kb on - strand at 129.882 kb on - strand at 130.220 kb on + strand, within MPMX19_04739 at 130.221 kb on - strand, within MPMX19_04739 at 130.221 kb on - strand, within MPMX19_04739 at 130.424 kb on + strand, within MPMX19_04739 at 130.424 kb on + strand, within MPMX19_04739 at 130.424 kb on + strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.622 kb on + strand, within MPMX19_04739 at 130.622 kb on + strand, within MPMX19_04739 at 130.710 kb on + strand at 130.769 kb on + strand at 130.774 kb on - strand at 131.186 kb on - strand, within MPMX19_04740 at 131.186 kb on - strand, within MPMX19_04740 at 131.186 kb on - strand, within MPMX19_04740 at 131.596 kb on + strand, within MPMX19_04740 at 131.596 kb on + strand, within MPMX19_04740 at 131.596 kb on + strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 128,907 + MPMX19_04738 0.21 +0.1 128,908 - MPMX19_04738 0.21 -0.5 129,327 + MPMX19_04738 0.56 -1.6 129,327 + MPMX19_04738 0.56 +0.6 129,328 - MPMX19_04738 0.56 +1.0 129,328 - MPMX19_04738 0.56 +0.9 129,328 - MPMX19_04738 0.56 -1.8 129,328 - MPMX19_04738 0.56 +0.3 129,881 + -1.2 129,881 + +1.1 129,881 + -0.7 129,881 + -0.5 129,882 - -0.7 129,882 - -1.2 129,882 - +1.3 129,882 - +0.1 130,220 + MPMX19_04739 0.44 +0.2 130,221 - MPMX19_04739 0.44 -1.0 130,221 - MPMX19_04739 0.44 -1.4 130,424 + MPMX19_04739 0.67 -0.0 130,424 + MPMX19_04739 0.67 +0.8 130,424 + MPMX19_04739 0.67 -0.8 130,425 - MPMX19_04739 0.67 -2.0 130,425 - MPMX19_04739 0.67 -0.4 130,425 - MPMX19_04739 0.67 -0.6 130,425 - MPMX19_04739 0.67 -1.4 130,425 - MPMX19_04739 0.67 -2.7 130,622 + MPMX19_04739 0.88 +0.4 130,622 + MPMX19_04739 0.88 +0.9 130,710 + -0.1 130,769 + -0.0 130,774 - -1.9 131,186 - MPMX19_04740 0.40 -1.8 131,186 - MPMX19_04740 0.40 -0.9 131,186 - MPMX19_04740 0.40 -1.2 131,596 + MPMX19_04740 0.79 +0.4 131,596 + MPMX19_04740 0.79 -1.6 131,596 + MPMX19_04740 0.79 +0.2 131,597 - MPMX19_04740 0.79 +0.2 131,597 - MPMX19_04740 0.79 -0.7 131,597 - MPMX19_04740 0.79 -0.9 131,597 - MPMX19_04740 0.79 +0.6 131,597 - MPMX19_04740 0.79 -0.6 131,597 - MPMX19_04740 0.79 -0.4
Or see this region's nucleotide sequence