Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04314

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04311 and MPMX19_04312 are separated by 302 nucleotidesMPMX19_04312 and MPMX19_04313 are separated by 23 nucleotidesMPMX19_04313 and MPMX19_04314 are separated by 113 nucleotidesMPMX19_04314 and MPMX19_04315 are separated by 537 nucleotides MPMX19_04311: MPMX19_04311 - 23S ribosomal RNA, at 671,308 to 674,041 _04311 MPMX19_04312: MPMX19_04312 - tRNA-Ala, at 674,344 to 674,419 _04312 MPMX19_04313: MPMX19_04313 - tRNA-Ile, at 674,443 to 674,519 _04313 MPMX19_04314: MPMX19_04314 - 16S ribosomal RNA, at 674,633 to 676,114 _04314 MPMX19_04315: MPMX19_04315 - Nuclease SbcCD subunit D, at 676,652 to 677,896 _04315 Position (kb) 674 675 676 677Strain fitness (log2 ratio) -2 -1 0 1at 676.184 kb on - strandat 676.184 kb on - strandat 676.313 kb on + strandat 676.343 kb on - strandat 676.343 kb on - strandat 676.616 kb on + strandat 676.616 kb on + strandat 676.616 kb on + strandat 676.617 kb on - strandat 676.617 kb on - strandat 676.617 kb on - strandat 676.850 kb on + strand, within MPMX19_04315at 676.850 kb on + strand, within MPMX19_04315at 676.850 kb on + strand, within MPMX19_04315at 676.851 kb on - strand, within MPMX19_04315at 676.851 kb on - strand, within MPMX19_04315at 676.851 kb on - strand, within MPMX19_04315at 676.851 kb on - strand, within MPMX19_04315at 676.851 kb on - strand, within MPMX19_04315at 676.851 kb on - strand, within MPMX19_04315at 676.851 kb on - strand, within MPMX19_04315at 676.851 kb on - strand, within MPMX19_04315at 676.851 kb on - strand, within MPMX19_04315at 676.851 kb on - strand, within MPMX19_04315at 676.851 kb on - strand, within MPMX19_04315at 676.851 kb on - strand, within MPMX19_04315at 677.087 kb on + strand, within MPMX19_04315at 677.087 kb on + strand, within MPMX19_04315at 677.088 kb on - strand, within MPMX19_04315at 677.088 kb on - strand, within MPMX19_04315at 677.088 kb on - strand, within MPMX19_04315at 677.088 kb on - strand, within MPMX19_04315at 677.088 kb on - strand, within MPMX19_04315at 677.088 kb on - strand, within MPMX19_04315at 677.088 kb on - strand, within MPMX19_04315

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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676,184 - -0.4
676,184 - -0.5
676,313 + -1.1
676,343 - +0.1
676,343 - -1.7
676,616 + -1.3
676,616 + +0.8
676,616 + -0.0
676,617 - -1.0
676,617 - +1.2
676,617 - -1.7
676,850 + MPMX19_04315 0.16 -1.1
676,850 + MPMX19_04315 0.16 -1.0
676,850 + MPMX19_04315 0.16 +1.2
676,851 - MPMX19_04315 0.16 +0.4
676,851 - MPMX19_04315 0.16 +0.3
676,851 - MPMX19_04315 0.16 +0.6
676,851 - MPMX19_04315 0.16 +0.6
676,851 - MPMX19_04315 0.16 +1.6
676,851 - MPMX19_04315 0.16 -1.0
676,851 - MPMX19_04315 0.16 -1.8
676,851 - MPMX19_04315 0.16 -0.1
676,851 - MPMX19_04315 0.16 -0.7
676,851 - MPMX19_04315 0.16 +0.0
676,851 - MPMX19_04315 0.16 -0.6
676,851 - MPMX19_04315 0.16 -0.6
677,087 + MPMX19_04315 0.35 -0.4
677,087 + MPMX19_04315 0.35 +0.2
677,088 - MPMX19_04315 0.35 +0.2
677,088 - MPMX19_04315 0.35 -1.0
677,088 - MPMX19_04315 0.35 -1.1
677,088 - MPMX19_04315 0.35 -1.3
677,088 - MPMX19_04315 0.35 +1.2
677,088 - MPMX19_04315 0.35 +0.5
677,088 - MPMX19_04315 0.35 -2.0

Or see this region's nucleotide sequence