Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04011 and MPMX19_04012 are separated by 33 nucleotides MPMX19_04012 and MPMX19_04013 are separated by 84 nucleotides MPMX19_04013 and MPMX19_04014 are separated by 208 nucleotides
MPMX19_04011: MPMX19_04011 - Zinc-type alcohol dehydrogenase-like protein, at 307,493 to 308,443
_04011
MPMX19_04012: MPMX19_04012 - hypothetical protein, at 308,477 to 308,902
_04012
MPMX19_04013: MPMX19_04013 - hypothetical protein, at 308,987 to 309,466
_04013
MPMX19_04014: MPMX19_04014 - hypothetical protein, at 309,675 to 310,625
_04014
Position (kb) 308
309
310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 308.075 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.243 kb on + strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.244 kb on - strand, within MPMX19_04011 at 308.264 kb on + strand, within MPMX19_04011 at 308.264 kb on + strand, within MPMX19_04011 at 308.265 kb on - strand, within MPMX19_04011 at 308.416 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.483 kb on + strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.484 kb on - strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.485 kb on + strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.486 kb on - strand at 308.494 kb on + strand at 308.897 kb on + strand at 308.897 kb on + strand at 308.898 kb on - strand at 308.898 kb on - strand at 308.909 kb on + strand at 308.909 kb on + strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.910 kb on - strand at 309.053 kb on + strand, within MPMX19_04013 at 309.053 kb on + strand, within MPMX19_04013 at 309.053 kb on + strand, within MPMX19_04013 at 309.053 kb on + strand, within MPMX19_04013 at 309.054 kb on - strand, within MPMX19_04013 at 309.054 kb on - strand, within MPMX19_04013 at 309.054 kb on - strand, within MPMX19_04013 at 309.260 kb on + strand, within MPMX19_04013 at 309.261 kb on - strand, within MPMX19_04013 at 309.261 kb on - strand, within MPMX19_04013 at 309.525 kb on + strand at 309.652 kb on - strand at 309.701 kb on + strand at 309.786 kb on - strand, within MPMX19_04014 at 309.786 kb on - strand, within MPMX19_04014 at 309.825 kb on - strand, within MPMX19_04014 at 309.825 kb on - strand, within MPMX19_04014 at 309.862 kb on + strand, within MPMX19_04014 at 309.863 kb on - strand, within MPMX19_04014 at 309.863 kb on - strand, within MPMX19_04014 at 309.896 kb on + strand, within MPMX19_04014 at 309.896 kb on + strand, within MPMX19_04014 at 309.896 kb on + strand, within MPMX19_04014 at 309.900 kb on + strand, within MPMX19_04014 at 309.900 kb on + strand, within MPMX19_04014 at 309.901 kb on - strand, within MPMX19_04014 at 309.903 kb on - strand, within MPMX19_04014 at 309.945 kb on + strand, within MPMX19_04014 at 309.945 kb on + strand, within MPMX19_04014 at 309.983 kb on + strand, within MPMX19_04014 at 309.985 kb on + strand, within MPMX19_04014 at 309.985 kb on + strand, within MPMX19_04014 at 309.986 kb on - strand, within MPMX19_04014 at 309.986 kb on - strand, within MPMX19_04014 at 310.077 kb on - strand, within MPMX19_04014 at 310.103 kb on - strand, within MPMX19_04014 at 310.103 kb on - strand, within MPMX19_04014 at 310.166 kb on + strand, within MPMX19_04014 at 310.167 kb on - strand, within MPMX19_04014 at 310.372 kb on + strand, within MPMX19_04014 at 310.407 kb on + strand, within MPMX19_04014 at 310.407 kb on + strand, within MPMX19_04014 at 310.407 kb on + strand, within MPMX19_04014 at 310.407 kb on + strand, within MPMX19_04014 at 310.408 kb on - strand, within MPMX19_04014 at 310.408 kb on - strand, within MPMX19_04014 at 310.408 kb on - strand, within MPMX19_04014 at 310.408 kb on - strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.411 kb on + strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.412 kb on - strand, within MPMX19_04014 at 310.416 kb on + strand, within MPMX19_04014 at 310.416 kb on + strand, within MPMX19_04014 at 310.416 kb on + strand, within MPMX19_04014 at 310.416 kb on + strand, within MPMX19_04014 at 310.417 kb on - strand, within MPMX19_04014 at 310.417 kb on - strand, within MPMX19_04014 at 310.445 kb on + strand, within MPMX19_04014
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 308,075 + MPMX19_04011 0.61 -1.6 308,243 + MPMX19_04011 0.79 -1.8 308,243 + MPMX19_04011 0.79 +0.8 308,243 + MPMX19_04011 0.79 -0.2 308,243 + MPMX19_04011 0.79 +0.7 308,243 + MPMX19_04011 0.79 -0.9 308,243 + MPMX19_04011 0.79 -0.0 308,243 + MPMX19_04011 0.79 -0.0 308,243 + MPMX19_04011 0.79 -1.0 308,243 + MPMX19_04011 0.79 +0.2 308,243 + MPMX19_04011 0.79 +1.2 308,243 + MPMX19_04011 0.79 -0.6 308,243 + MPMX19_04011 0.79 +0.3 308,243 + MPMX19_04011 0.79 -1.5 308,243 + MPMX19_04011 0.79 -1.4 308,244 - MPMX19_04011 0.79 +0.8 308,244 - MPMX19_04011 0.79 -1.0 308,244 - MPMX19_04011 0.79 -1.8 308,244 - MPMX19_04011 0.79 +0.2 308,244 - MPMX19_04011 0.79 -0.3 308,244 - MPMX19_04011 0.79 -0.6 308,244 - MPMX19_04011 0.79 +1.3 308,244 - MPMX19_04011 0.79 -0.9 308,244 - MPMX19_04011 0.79 -0.3 308,244 - MPMX19_04011 0.79 +0.3 308,244 - MPMX19_04011 0.79 -0.3 308,244 - MPMX19_04011 0.79 -0.2 308,244 - MPMX19_04011 0.79 +0.2 308,244 - MPMX19_04011 0.79 -0.3 308,244 - MPMX19_04011 0.79 +0.1 308,244 - MPMX19_04011 0.79 -1.2 308,244 - MPMX19_04011 0.79 -1.4 308,264 + MPMX19_04011 0.81 +0.4 308,264 + MPMX19_04011 0.81 -0.4 308,265 - MPMX19_04011 0.81 -0.4 308,416 + -2.0 308,483 + -0.2 308,483 + -0.1 308,483 + -0.4 308,483 + +1.6 308,483 + +0.1 308,483 + -0.5 308,483 + -0.1 308,483 + -0.1 308,483 + -0.8 308,483 + +0.2 308,483 + +0.4 308,483 + -0.1 308,483 + +0.6 308,483 + -0.6 308,483 + -1.0 308,483 + +0.0 308,483 + +0.6 308,483 + -0.6 308,483 + +0.0 308,483 + -0.0 308,483 + -0.6 308,483 + +0.6 308,483 + -0.4 308,483 + +0.2 308,483 + +0.1 308,483 + -1.8 308,483 + -1.3 308,484 - +0.2 308,484 - -0.3 308,484 - -0.7 308,484 - -0.3 308,484 - -0.0 308,484 - +0.4 308,484 - -0.5 308,484 - -2.1 308,484 - -1.8 308,484 - +0.2 308,484 - +1.6 308,484 - +0.2 308,484 - -1.5 308,484 - +1.4 308,484 - -2.5 308,484 - +0.1 308,484 - -1.0 308,484 - +0.9 308,484 - -0.9 308,485 + +0.6 308,485 + +0.6 308,485 + -0.9 308,485 + +0.4 308,485 + -0.3 308,485 + -1.1 308,485 + -0.2 308,485 + -0.0 308,485 + -0.1 308,485 + -0.6 308,485 + -0.4 308,485 + +0.1 308,485 + -2.7 308,485 + -0.0 308,485 + +0.8 308,486 - +0.2 308,486 - -0.0 308,486 - -1.4 308,486 - -0.7 308,486 - -0.4 308,486 - +0.6 308,486 - +0.6 308,486 - -0.1 308,486 - +0.7 308,486 - +0.8 308,486 - -1.4 308,486 - +0.5 308,486 - -0.0 308,486 - -0.1 308,486 - -0.3 308,486 - -1.8 308,486 - +0.2 308,494 + -0.0 308,897 + -0.8 308,897 + +0.3 308,898 - -0.8 308,898 - +0.2 308,909 + -1.2 308,909 + -1.7 308,910 - -1.3 308,910 - -0.8 308,910 - -1.9 308,910 - +1.6 308,910 - +0.4 308,910 - +0.6 308,910 - -0.2 308,910 - -0.4 308,910 - -0.8 308,910 - +0.2 308,910 - -1.9 308,910 - -1.9 308,910 - -3.3 309,053 + MPMX19_04013 0.14 -1.9 309,053 + MPMX19_04013 0.14 +1.3 309,053 + MPMX19_04013 0.14 -1.0 309,053 + MPMX19_04013 0.14 -0.4 309,054 - MPMX19_04013 0.14 -1.2 309,054 - MPMX19_04013 0.14 -0.0 309,054 - MPMX19_04013 0.14 +0.8 309,260 + MPMX19_04013 0.57 -1.5 309,261 - MPMX19_04013 0.57 -1.3 309,261 - MPMX19_04013 0.57 -1.6 309,525 + -0.5 309,652 - -0.9 309,701 + -1.3 309,786 - MPMX19_04014 0.12 -0.0 309,786 - MPMX19_04014 0.12 -0.8 309,825 - MPMX19_04014 0.16 -0.8 309,825 - MPMX19_04014 0.16 -0.0 309,862 + MPMX19_04014 0.20 -0.4 309,863 - MPMX19_04014 0.20 -1.5 309,863 - MPMX19_04014 0.20 -0.3 309,896 + MPMX19_04014 0.23 +1.6 309,896 + MPMX19_04014 0.23 -0.0 309,896 + MPMX19_04014 0.23 -0.0 309,900 + MPMX19_04014 0.24 +0.8 309,900 + MPMX19_04014 0.24 -0.3 309,901 - MPMX19_04014 0.24 +1.2 309,903 - MPMX19_04014 0.24 -0.2 309,945 + MPMX19_04014 0.28 -0.2 309,945 + MPMX19_04014 0.28 -0.8 309,983 + MPMX19_04014 0.32 +0.4 309,985 + MPMX19_04014 0.33 +0.2 309,985 + MPMX19_04014 0.33 -0.6 309,986 - MPMX19_04014 0.33 -1.1 309,986 - MPMX19_04014 0.33 -0.8 310,077 - MPMX19_04014 0.42 +0.3 310,103 - MPMX19_04014 0.45 -2.0 310,103 - MPMX19_04014 0.45 -1.6 310,166 + MPMX19_04014 0.52 -0.9 310,167 - MPMX19_04014 0.52 -0.2 310,372 + MPMX19_04014 0.73 -0.0 310,407 + MPMX19_04014 0.77 -1.8 310,407 + MPMX19_04014 0.77 -0.6 310,407 + MPMX19_04014 0.77 +0.6 310,407 + MPMX19_04014 0.77 +1.0 310,408 - MPMX19_04014 0.77 +0.6 310,408 - MPMX19_04014 0.77 -1.4 310,408 - MPMX19_04014 0.77 -0.0 310,408 - MPMX19_04014 0.77 +1.3 310,411 + MPMX19_04014 0.77 -0.5 310,411 + MPMX19_04014 0.77 +0.4 310,411 + MPMX19_04014 0.77 -1.0 310,411 + MPMX19_04014 0.77 +0.7 310,411 + MPMX19_04014 0.77 +1.6 310,411 + MPMX19_04014 0.77 -2.1 310,411 + MPMX19_04014 0.77 +0.3 310,411 + MPMX19_04014 0.77 +2.3 310,411 + MPMX19_04014 0.77 -1.4 310,411 + MPMX19_04014 0.77 +0.2 310,411 + MPMX19_04014 0.77 -1.0 310,412 - MPMX19_04014 0.77 -0.0 310,412 - MPMX19_04014 0.77 -0.8 310,412 - MPMX19_04014 0.77 -0.9 310,412 - MPMX19_04014 0.77 -0.0 310,412 - MPMX19_04014 0.77 -0.1 310,412 - MPMX19_04014 0.77 -1.4 310,412 - MPMX19_04014 0.77 +0.7 310,412 - MPMX19_04014 0.77 +0.2 310,412 - MPMX19_04014 0.77 -0.9 310,412 - MPMX19_04014 0.77 -1.4 310,412 - MPMX19_04014 0.77 +0.6 310,416 + MPMX19_04014 0.78 +0.2 310,416 + MPMX19_04014 0.78 -0.4 310,416 + MPMX19_04014 0.78 +1.6 310,416 + MPMX19_04014 0.78 -0.4 310,417 - MPMX19_04014 0.78 +0.2 310,417 - MPMX19_04014 0.78 -1.2 310,445 + MPMX19_04014 0.81 -0.5
Or see this region's nucleotide sequence