Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02957

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02956 and MPMX19_02957 are separated by 31 nucleotidesMPMX19_02957 and MPMX19_02958 are separated by 21 nucleotides MPMX19_02956: MPMX19_02956 - hypothetical protein, at 214,995 to 216,080 _02956 MPMX19_02957: MPMX19_02957 - Ribokinase, at 216,112 to 217,035 _02957 MPMX19_02958: MPMX19_02958 - Ribulokinase, at 217,057 to 218,697 _02958 Position (kb) 216 217 218Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 215.157 kb on + strand, within MPMX19_02956at 215.157 kb on + strand, within MPMX19_02956at 215.158 kb on - strand, within MPMX19_02956at 215.158 kb on - strand, within MPMX19_02956at 215.158 kb on - strand, within MPMX19_02956at 215.158 kb on - strand, within MPMX19_02956at 215.160 kb on + strand, within MPMX19_02956at 215.160 kb on + strand, within MPMX19_02956at 215.161 kb on - strand, within MPMX19_02956at 215.161 kb on - strand, within MPMX19_02956at 215.161 kb on - strand, within MPMX19_02956at 215.259 kb on + strand, within MPMX19_02956at 215.259 kb on + strand, within MPMX19_02956at 215.259 kb on + strand, within MPMX19_02956at 215.259 kb on + strand, within MPMX19_02956at 215.259 kb on + strand, within MPMX19_02956at 215.259 kb on + strand, within MPMX19_02956at 215.259 kb on + strand, within MPMX19_02956at 215.259 kb on + strand, within MPMX19_02956at 215.259 kb on + strand, within MPMX19_02956at 215.259 kb on + strand, within MPMX19_02956at 215.259 kb on + strand, within MPMX19_02956at 215.259 kb on + strand, within MPMX19_02956at 215.260 kb on - strand, within MPMX19_02956at 215.260 kb on - strand, within MPMX19_02956at 215.260 kb on - strand, within MPMX19_02956at 215.260 kb on - strand, within MPMX19_02956at 215.260 kb on - strand, within MPMX19_02956at 215.260 kb on - strand, within MPMX19_02956at 215.260 kb on - strand, within MPMX19_02956at 215.260 kb on - strand, within MPMX19_02956at 215.260 kb on - strand, within MPMX19_02956at 215.400 kb on + strand, within MPMX19_02956at 215.400 kb on + strand, within MPMX19_02956at 215.400 kb on + strand, within MPMX19_02956at 215.400 kb on + strand, within MPMX19_02956at 215.400 kb on + strand, within MPMX19_02956at 215.400 kb on + strand, within MPMX19_02956at 215.400 kb on + strand, within MPMX19_02956at 215.400 kb on + strand, within MPMX19_02956at 215.400 kb on + strand, within MPMX19_02956at 215.400 kb on + strand, within MPMX19_02956at 215.400 kb on + strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.401 kb on - strand, within MPMX19_02956at 215.402 kb on + strand, within MPMX19_02956at 215.402 kb on + strand, within MPMX19_02956at 215.402 kb on + strand, within MPMX19_02956at 215.402 kb on + strand, within MPMX19_02956at 215.403 kb on - strand, within MPMX19_02956at 215.403 kb on - strand, within MPMX19_02956at 215.403 kb on - strand, within MPMX19_02956at 215.403 kb on - strand, within MPMX19_02956at 215.427 kb on + strand, within MPMX19_02956at 215.427 kb on + strand, within MPMX19_02956at 215.427 kb on + strand, within MPMX19_02956at 215.427 kb on + strand, within MPMX19_02956at 215.427 kb on + strand, within MPMX19_02956at 215.428 kb on - strand, within MPMX19_02956at 215.428 kb on - strand, within MPMX19_02956at 215.428 kb on - strand, within MPMX19_02956at 215.428 kb on - strand, within MPMX19_02956at 215.428 kb on - strand, within MPMX19_02956at 215.428 kb on - strand, within MPMX19_02956at 215.428 kb on - strand, within MPMX19_02956at 215.428 kb on - strand, within MPMX19_02956at 215.451 kb on + strand, within MPMX19_02956at 215.451 kb on + strand, within MPMX19_02956at 215.451 kb on + strand, within MPMX19_02956at 215.451 kb on + strand, within MPMX19_02956at 215.452 kb on - strand, within MPMX19_02956at 215.452 kb on - strand, within MPMX19_02956at 215.452 kb on - strand, within MPMX19_02956at 215.452 kb on - strand, within MPMX19_02956at 215.550 kb on + strand, within MPMX19_02956at 215.550 kb on + strand, within MPMX19_02956at 215.550 kb on + strand, within MPMX19_02956at 215.550 kb on + strand, within MPMX19_02956at 215.550 kb on + strand, within MPMX19_02956at 215.550 kb on + strand, within MPMX19_02956at 215.550 kb on + strand, within MPMX19_02956at 215.550 kb on + strand, within MPMX19_02956at 215.550 kb on + strand, within MPMX19_02956at 215.550 kb on + strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.551 kb on - strand, within MPMX19_02956at 215.673 kb on + strand, within MPMX19_02956at 215.674 kb on - strand, within MPMX19_02956at 215.674 kb on - strand, within MPMX19_02956at 215.763 kb on + strand, within MPMX19_02956at 215.763 kb on + strand, within MPMX19_02956at 215.763 kb on + strand, within MPMX19_02956at 215.764 kb on - strand, within MPMX19_02956at 215.764 kb on - strand, within MPMX19_02956at 215.764 kb on - strand, within MPMX19_02956at 215.764 kb on - strand, within MPMX19_02956at 215.764 kb on - strand, within MPMX19_02956at 215.847 kb on + strand, within MPMX19_02956at 215.847 kb on + strand, within MPMX19_02956at 215.848 kb on - strand, within MPMX19_02956at 215.876 kb on - strand, within MPMX19_02956at 215.949 kb on + strand, within MPMX19_02956at 215.949 kb on + strand, within MPMX19_02956at 215.949 kb on + strand, within MPMX19_02956at 215.950 kb on - strand, within MPMX19_02956at 216.027 kb on + strandat 216.084 kb on - strandat 216.104 kb on + strandat 216.105 kb on - strandat 216.160 kb on + strandat 216.160 kb on + strandat 216.160 kb on + strandat 216.160 kb on + strandat 216.160 kb on + strandat 216.160 kb on + strandat 216.160 kb on + strandat 216.161 kb on - strandat 216.161 kb on - strandat 216.161 kb on - strandat 216.161 kb on - strandat 216.161 kb on - strandat 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.550 kb on + strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.551 kb on - strand, within MPMX19_02957at 216.898 kb on + strand, within MPMX19_02957at 216.899 kb on - strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.901 kb on + strand, within MPMX19_02957at 216.902 kb on - strand, within MPMX19_02957at 216.902 kb on - strand, within MPMX19_02957at 216.949 kb on + strandat 216.950 kb on - strandat 216.950 kb on - strandat 216.991 kb on + strandat 217.033 kb on + strandat 217.033 kb on + strandat 217.444 kb on + strand, within MPMX19_02958at 217.444 kb on + strand, within MPMX19_02958at 217.444 kb on + strand, within MPMX19_02958at 217.444 kb on + strand, within MPMX19_02958at 217.445 kb on - strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.621 kb on + strand, within MPMX19_02958at 217.622 kb on - strand, within MPMX19_02958at 217.622 kb on - strand, within MPMX19_02958at 217.622 kb on - strand, within MPMX19_02958at 217.622 kb on - strand, within MPMX19_02958at 217.622 kb on - strand, within MPMX19_02958at 217.654 kb on + strand, within MPMX19_02958at 217.655 kb on - strand, within MPMX19_02958at 217.655 kb on - strand, within MPMX19_02958at 217.655 kb on - strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.975 kb on + strand, within MPMX19_02958at 217.975 kb on + strand, within MPMX19_02958at 217.976 kb on - strand, within MPMX19_02958at 217.976 kb on - strand, within MPMX19_02958at 217.976 kb on - strand, within MPMX19_02958

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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215,157 + MPMX19_02956 0.15 -1.0
215,157 + MPMX19_02956 0.15 +0.2
215,158 - MPMX19_02956 0.15 -0.2
215,158 - MPMX19_02956 0.15 -0.6
215,158 - MPMX19_02956 0.15 -0.1
215,158 - MPMX19_02956 0.15 -1.4
215,160 + MPMX19_02956 0.15 -0.7
215,160 + MPMX19_02956 0.15 +0.9
215,161 - MPMX19_02956 0.15 +0.3
215,161 - MPMX19_02956 0.15 -2.1
215,161 - MPMX19_02956 0.15 -0.7
215,259 + MPMX19_02956 0.24 -1.4
215,259 + MPMX19_02956 0.24 -0.1
215,259 + MPMX19_02956 0.24 -0.2
215,259 + MPMX19_02956 0.24 -1.1
215,259 + MPMX19_02956 0.24 -0.0
215,259 + MPMX19_02956 0.24 -0.0
215,259 + MPMX19_02956 0.24 -1.7
215,259 + MPMX19_02956 0.24 +0.2
215,259 + MPMX19_02956 0.24 -0.4
215,259 + MPMX19_02956 0.24 +1.1
215,259 + MPMX19_02956 0.24 +0.4
215,259 + MPMX19_02956 0.24 -0.4
215,260 - MPMX19_02956 0.24 +1.6
215,260 - MPMX19_02956 0.24 +0.6
215,260 - MPMX19_02956 0.24 -0.7
215,260 - MPMX19_02956 0.24 -1.9
215,260 - MPMX19_02956 0.24 -0.5
215,260 - MPMX19_02956 0.24 -1.2
215,260 - MPMX19_02956 0.24 -1.4
215,260 - MPMX19_02956 0.24 -0.2
215,260 - MPMX19_02956 0.24 -0.3
215,400 + MPMX19_02956 0.37 -2.0
215,400 + MPMX19_02956 0.37 -1.2
215,400 + MPMX19_02956 0.37 -0.8
215,400 + MPMX19_02956 0.37 -2.2
215,400 + MPMX19_02956 0.37 +0.4
215,400 + MPMX19_02956 0.37 -0.7
215,400 + MPMX19_02956 0.37 -2.0
215,400 + MPMX19_02956 0.37 -0.1
215,400 + MPMX19_02956 0.37 +0.6
215,400 + MPMX19_02956 0.37 +0.2
215,400 + MPMX19_02956 0.37 -0.4
215,401 - MPMX19_02956 0.37 +0.8
215,401 - MPMX19_02956 0.37 -0.3
215,401 - MPMX19_02956 0.37 -0.4
215,401 - MPMX19_02956 0.37 -1.4
215,401 - MPMX19_02956 0.37 +0.6
215,401 - MPMX19_02956 0.37 -1.0
215,401 - MPMX19_02956 0.37 +0.1
215,401 - MPMX19_02956 0.37 +1.3
215,401 - MPMX19_02956 0.37 -1.2
215,401 - MPMX19_02956 0.37 -0.1
215,401 - MPMX19_02956 0.37 +0.5
215,401 - MPMX19_02956 0.37 -2.6
215,401 - MPMX19_02956 0.37 -0.5
215,401 - MPMX19_02956 0.37 -0.4
215,402 + MPMX19_02956 0.37 -1.2
215,402 + MPMX19_02956 0.37 -0.2
215,402 + MPMX19_02956 0.37 -1.6
215,402 + MPMX19_02956 0.37 -0.7
215,403 - MPMX19_02956 0.38 -0.1
215,403 - MPMX19_02956 0.38 -0.0
215,403 - MPMX19_02956 0.38 +0.2
215,403 - MPMX19_02956 0.38 +0.0
215,427 + MPMX19_02956 0.40 +1.8
215,427 + MPMX19_02956 0.40 -1.8
215,427 + MPMX19_02956 0.40 -0.8
215,427 + MPMX19_02956 0.40 +0.1
215,427 + MPMX19_02956 0.40 -0.8
215,428 - MPMX19_02956 0.40 -1.3
215,428 - MPMX19_02956 0.40 +0.3
215,428 - MPMX19_02956 0.40 -0.7
215,428 - MPMX19_02956 0.40 -0.9
215,428 - MPMX19_02956 0.40 -0.3
215,428 - MPMX19_02956 0.40 +0.7
215,428 - MPMX19_02956 0.40 -2.1
215,428 - MPMX19_02956 0.40 -1.4
215,451 + MPMX19_02956 0.42 -0.8
215,451 + MPMX19_02956 0.42 +0.1
215,451 + MPMX19_02956 0.42 -0.9
215,451 + MPMX19_02956 0.42 +0.4
215,452 - MPMX19_02956 0.42 +0.5
215,452 - MPMX19_02956 0.42 -0.2
215,452 - MPMX19_02956 0.42 -0.5
215,452 - MPMX19_02956 0.42 -0.2
215,550 + MPMX19_02956 0.51 -0.6
215,550 + MPMX19_02956 0.51 +1.2
215,550 + MPMX19_02956 0.51 +1.3
215,550 + MPMX19_02956 0.51 -0.2
215,550 + MPMX19_02956 0.51 +0.4
215,550 + MPMX19_02956 0.51 +0.9
215,550 + MPMX19_02956 0.51 -1.2
215,550 + MPMX19_02956 0.51 -0.9
215,550 + MPMX19_02956 0.51 -2.3
215,550 + MPMX19_02956 0.51 -0.9
215,551 - MPMX19_02956 0.51 -0.6
215,551 - MPMX19_02956 0.51 -1.4
215,551 - MPMX19_02956 0.51 -1.1
215,551 - MPMX19_02956 0.51 -1.0
215,551 - MPMX19_02956 0.51 +0.6
215,551 - MPMX19_02956 0.51 -2.1
215,551 - MPMX19_02956 0.51 +0.3
215,551 - MPMX19_02956 0.51 -1.2
215,551 - MPMX19_02956 0.51 +0.1
215,551 - MPMX19_02956 0.51 -1.2
215,551 - MPMX19_02956 0.51 -0.2
215,551 - MPMX19_02956 0.51 +1.3
215,551 - MPMX19_02956 0.51 -0.8
215,551 - MPMX19_02956 0.51 -0.3
215,551 - MPMX19_02956 0.51 +0.3
215,551 - MPMX19_02956 0.51 -0.2
215,551 - MPMX19_02956 0.51 -1.7
215,551 - MPMX19_02956 0.51 -0.0
215,551 - MPMX19_02956 0.51 -3.0
215,673 + MPMX19_02956 0.62 -2.1
215,674 - MPMX19_02956 0.63 -0.0
215,674 - MPMX19_02956 0.63 -0.2
215,763 + MPMX19_02956 0.71 -1.8
215,763 + MPMX19_02956 0.71 -1.4
215,763 + MPMX19_02956 0.71 -0.6
215,764 - MPMX19_02956 0.71 -0.9
215,764 - MPMX19_02956 0.71 +0.4
215,764 - MPMX19_02956 0.71 -0.2
215,764 - MPMX19_02956 0.71 -0.2
215,764 - MPMX19_02956 0.71 +0.8
215,847 + MPMX19_02956 0.78 -0.4
215,847 + MPMX19_02956 0.78 +0.5
215,848 - MPMX19_02956 0.79 +1.1
215,876 - MPMX19_02956 0.81 +0.9
215,949 + MPMX19_02956 0.88 -0.4
215,949 + MPMX19_02956 0.88 -0.2
215,949 + MPMX19_02956 0.88 -0.8
215,950 - MPMX19_02956 0.88 +0.6
216,027 + -0.8
216,084 - -0.8
216,104 + -0.2
216,105 - -1.2
216,160 + -0.0
216,160 + -1.0
216,160 + +0.1
216,160 + -0.3
216,160 + +0.3
216,160 + -0.5
216,160 + +0.1
216,161 - -0.4
216,161 - -0.4
216,161 - -0.0
216,161 - -0.1
216,161 - +1.6
216,550 + MPMX19_02957 0.47 +0.2
216,550 + MPMX19_02957 0.47 -0.4
216,550 + MPMX19_02957 0.47 -0.6
216,550 + MPMX19_02957 0.47 -0.4
216,550 + MPMX19_02957 0.47 -1.2
216,550 + MPMX19_02957 0.47 -1.2
216,550 + MPMX19_02957 0.47 -1.2
216,550 + MPMX19_02957 0.47 -0.6
216,550 + MPMX19_02957 0.47 -0.5
216,550 + MPMX19_02957 0.47 -0.8
216,551 - MPMX19_02957 0.48 -2.1
216,551 - MPMX19_02957 0.48 -1.4
216,551 - MPMX19_02957 0.48 -1.8
216,551 - MPMX19_02957 0.48 -1.5
216,551 - MPMX19_02957 0.48 -1.7
216,551 - MPMX19_02957 0.48 +1.0
216,551 - MPMX19_02957 0.48 -0.7
216,551 - MPMX19_02957 0.48 -1.3
216,898 + MPMX19_02957 0.85 -2.7
216,899 - MPMX19_02957 0.85 -1.0
216,901 + MPMX19_02957 0.85 -0.0
216,901 + MPMX19_02957 0.85 -0.2
216,901 + MPMX19_02957 0.85 -0.9
216,901 + MPMX19_02957 0.85 -1.2
216,901 + MPMX19_02957 0.85 -0.4
216,901 + MPMX19_02957 0.85 -0.6
216,901 + MPMX19_02957 0.85 -0.6
216,902 - MPMX19_02957 0.85 +0.9
216,902 - MPMX19_02957 0.85 -0.5
216,949 + +1.6
216,950 - +1.2
216,950 - -2.4
216,991 + -0.7
217,033 + -0.3
217,033 + +0.7
217,444 + MPMX19_02958 0.24 +0.6
217,444 + MPMX19_02958 0.24 -1.6
217,444 + MPMX19_02958 0.24 -1.4
217,444 + MPMX19_02958 0.24 +1.3
217,445 - MPMX19_02958 0.24 +0.7
217,621 + MPMX19_02958 0.34 -0.4
217,621 + MPMX19_02958 0.34 -0.2
217,621 + MPMX19_02958 0.34 -1.2
217,621 + MPMX19_02958 0.34 +0.2
217,621 + MPMX19_02958 0.34 -1.1
217,621 + MPMX19_02958 0.34 +0.0
217,621 + MPMX19_02958 0.34 +1.3
217,621 + MPMX19_02958 0.34 -0.8
217,622 - MPMX19_02958 0.34 -0.7
217,622 - MPMX19_02958 0.34 +0.2
217,622 - MPMX19_02958 0.34 +1.8
217,622 - MPMX19_02958 0.34 -1.5
217,622 - MPMX19_02958 0.34 -0.6
217,654 + MPMX19_02958 0.36 -2.0
217,655 - MPMX19_02958 0.36 +1.3
217,655 - MPMX19_02958 0.36 +0.8
217,655 - MPMX19_02958 0.36 +0.5
217,923 + MPMX19_02958 0.53 -0.7
217,923 + MPMX19_02958 0.53 -1.6
217,923 + MPMX19_02958 0.53 +0.4
217,923 + MPMX19_02958 0.53 +0.0
217,923 + MPMX19_02958 0.53 +0.6
217,923 + MPMX19_02958 0.53 +0.1
217,923 + MPMX19_02958 0.53 +0.6
217,924 - MPMX19_02958 0.53 -0.4
217,924 - MPMX19_02958 0.53 +0.4
217,924 - MPMX19_02958 0.53 -0.4
217,924 - MPMX19_02958 0.53 +0.6
217,924 - MPMX19_02958 0.53 -0.0
217,924 - MPMX19_02958 0.53 +1.0
217,975 + MPMX19_02958 0.56 -0.2
217,975 + MPMX19_02958 0.56 -2.0
217,976 - MPMX19_02958 0.56 -0.5
217,976 - MPMX19_02958 0.56 +1.1
217,976 - MPMX19_02958 0.56 +0.6

Or see this region's nucleotide sequence