Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02954

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02953 and MPMX19_02954 are separated by 11 nucleotidesMPMX19_02954 and MPMX19_02955 are separated by 12 nucleotides MPMX19_02953: MPMX19_02953 - Ribose import ATP-binding protein RbsA, at 211,460 to 212,962 _02953 MPMX19_02954: MPMX19_02954 - Ribose import permease protein RbsC, at 212,974 to 213,951 _02954 MPMX19_02955: MPMX19_02955 - Autoinducer 2 import system permease protein LsrD, at 213,964 to 214,956 _02955 Position (kb) 212 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 212.201 kb on + strand, within MPMX19_02953at 212.201 kb on + strand, within MPMX19_02953at 212.202 kb on - strand, within MPMX19_02953at 212.202 kb on - strand, within MPMX19_02953at 212.202 kb on - strand, within MPMX19_02953at 212.202 kb on - strand, within MPMX19_02953at 212.388 kb on - strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.465 kb on + strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.466 kb on - strand, within MPMX19_02953at 212.540 kb on + strand, within MPMX19_02953at 212.540 kb on + strand, within MPMX19_02953at 212.540 kb on + strand, within MPMX19_02953at 212.956 kb on + strandat 212.956 kb on + strandat 212.956 kb on + strandat 212.957 kb on - strandat 212.957 kb on - strandat 212.957 kb on - strandat 213.193 kb on + strand, within MPMX19_02954at 213.193 kb on + strand, within MPMX19_02954at 213.193 kb on + strand, within MPMX19_02954at 213.193 kb on + strand, within MPMX19_02954at 213.193 kb on + strand, within MPMX19_02954at 213.193 kb on + strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.194 kb on - strand, within MPMX19_02954at 213.226 kb on + strand, within MPMX19_02954at 213.227 kb on - strand, within MPMX19_02954at 213.227 kb on - strand, within MPMX19_02954at 213.227 kb on - strand, within MPMX19_02954at 213.305 kb on - strand, within MPMX19_02954at 213.305 kb on - strand, within MPMX19_02954at 213.478 kb on + strand, within MPMX19_02954at 213.478 kb on + strand, within MPMX19_02954at 213.478 kb on + strand, within MPMX19_02954at 213.478 kb on + strand, within MPMX19_02954at 213.478 kb on + strand, within MPMX19_02954at 213.479 kb on - strand, within MPMX19_02954at 213.479 kb on - strand, within MPMX19_02954at 213.479 kb on - strand, within MPMX19_02954at 213.505 kb on + strand, within MPMX19_02954at 213.505 kb on + strand, within MPMX19_02954at 213.505 kb on + strand, within MPMX19_02954at 213.506 kb on - strand, within MPMX19_02954at 213.506 kb on - strand, within MPMX19_02954at 213.506 kb on - strand, within MPMX19_02954at 213.544 kb on + strand, within MPMX19_02954at 213.544 kb on + strand, within MPMX19_02954at 213.544 kb on + strand, within MPMX19_02954at 213.544 kb on + strand, within MPMX19_02954at 213.568 kb on + strand, within MPMX19_02954at 213.568 kb on + strand, within MPMX19_02954at 213.569 kb on - strand, within MPMX19_02954at 213.640 kb on + strand, within MPMX19_02954at 213.640 kb on + strand, within MPMX19_02954at 213.640 kb on + strand, within MPMX19_02954at 213.640 kb on + strand, within MPMX19_02954at 213.640 kb on + strand, within MPMX19_02954at 213.641 kb on - strand, within MPMX19_02954at 214.087 kb on + strand, within MPMX19_02955at 214.088 kb on - strand, within MPMX19_02955at 214.088 kb on - strand, within MPMX19_02955at 214.088 kb on - strand, within MPMX19_02955at 214.088 kb on - strand, within MPMX19_02955at 214.090 kb on + strand, within MPMX19_02955at 214.090 kb on + strand, within MPMX19_02955at 214.090 kb on + strand, within MPMX19_02955at 214.090 kb on + strand, within MPMX19_02955at 214.090 kb on + strand, within MPMX19_02955at 214.090 kb on + strand, within MPMX19_02955at 214.090 kb on + strand, within MPMX19_02955at 214.090 kb on + strand, within MPMX19_02955at 214.090 kb on + strand, within MPMX19_02955at 214.091 kb on - strand, within MPMX19_02955at 214.091 kb on - strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.111 kb on + strand, within MPMX19_02955at 214.112 kb on - strand, within MPMX19_02955at 214.112 kb on - strand, within MPMX19_02955at 214.112 kb on - strand, within MPMX19_02955at 214.112 kb on - strand, within MPMX19_02955at 214.112 kb on - strand, within MPMX19_02955at 214.112 kb on - strand, within MPMX19_02955at 214.645 kb on + strand, within MPMX19_02955at 214.645 kb on + strand, within MPMX19_02955at 214.645 kb on + strand, within MPMX19_02955at 214.645 kb on + strand, within MPMX19_02955at 214.645 kb on + strand, within MPMX19_02955at 214.645 kb on + strand, within MPMX19_02955at 214.645 kb on + strand, within MPMX19_02955at 214.646 kb on - strand, within MPMX19_02955at 214.646 kb on - strand, within MPMX19_02955at 214.646 kb on - strand, within MPMX19_02955at 214.646 kb on - strand, within MPMX19_02955at 214.646 kb on - strand, within MPMX19_02955at 214.646 kb on - strand, within MPMX19_02955at 214.651 kb on + strand, within MPMX19_02955at 214.651 kb on + strand, within MPMX19_02955at 214.651 kb on + strand, within MPMX19_02955at 214.651 kb on + strand, within MPMX19_02955at 214.651 kb on + strand, within MPMX19_02955at 214.651 kb on + strand, within MPMX19_02955at 214.651 kb on + strand, within MPMX19_02955at 214.651 kb on + strand, within MPMX19_02955at 214.651 kb on + strand, within MPMX19_02955at 214.651 kb on + strand, within MPMX19_02955at 214.652 kb on - strand, within MPMX19_02955at 214.652 kb on - strand, within MPMX19_02955at 214.652 kb on - strand, within MPMX19_02955at 214.652 kb on - strand, within MPMX19_02955at 214.652 kb on - strand, within MPMX19_02955at 214.727 kb on - strand, within MPMX19_02955at 214.738 kb on + strand, within MPMX19_02955at 214.739 kb on - strand, within MPMX19_02955at 214.739 kb on - strand, within MPMX19_02955at 214.739 kb on - strand, within MPMX19_02955at 214.936 kb on + strandat 214.936 kb on + strandat 214.937 kb on - strandat 214.937 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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212,201 + MPMX19_02953 0.49 -0.5
212,201 + MPMX19_02953 0.49 -0.2
212,202 - MPMX19_02953 0.49 -0.2
212,202 - MPMX19_02953 0.49 -0.1
212,202 - MPMX19_02953 0.49 -1.1
212,202 - MPMX19_02953 0.49 -0.0
212,388 - MPMX19_02953 0.62 -0.3
212,465 + MPMX19_02953 0.67 -0.3
212,465 + MPMX19_02953 0.67 -0.7
212,465 + MPMX19_02953 0.67 -1.0
212,465 + MPMX19_02953 0.67 +0.3
212,465 + MPMX19_02953 0.67 -0.2
212,465 + MPMX19_02953 0.67 +0.6
212,465 + MPMX19_02953 0.67 -1.9
212,465 + MPMX19_02953 0.67 -0.2
212,466 - MPMX19_02953 0.67 +1.0
212,466 - MPMX19_02953 0.67 -1.0
212,466 - MPMX19_02953 0.67 -0.0
212,466 - MPMX19_02953 0.67 -1.1
212,466 - MPMX19_02953 0.67 -1.1
212,466 - MPMX19_02953 0.67 +0.3
212,466 - MPMX19_02953 0.67 -0.1
212,466 - MPMX19_02953 0.67 -0.2
212,540 + MPMX19_02953 0.72 +1.6
212,540 + MPMX19_02953 0.72 -1.1
212,540 + MPMX19_02953 0.72 -0.2
212,956 + +0.1
212,956 + +0.2
212,956 + -0.1
212,957 - +1.4
212,957 - -1.8
212,957 - -2.7
213,193 + MPMX19_02954 0.22 -0.0
213,193 + MPMX19_02954 0.22 -1.3
213,193 + MPMX19_02954 0.22 +1.6
213,193 + MPMX19_02954 0.22 -1.2
213,193 + MPMX19_02954 0.22 -1.6
213,193 + MPMX19_02954 0.22 -1.3
213,194 - MPMX19_02954 0.22 -2.3
213,194 - MPMX19_02954 0.22 -0.6
213,194 - MPMX19_02954 0.22 -0.5
213,194 - MPMX19_02954 0.22 -0.8
213,194 - MPMX19_02954 0.22 -2.1
213,194 - MPMX19_02954 0.22 -0.5
213,194 - MPMX19_02954 0.22 -1.2
213,194 - MPMX19_02954 0.22 -1.9
213,194 - MPMX19_02954 0.22 +2.1
213,226 + MPMX19_02954 0.26 -0.2
213,227 - MPMX19_02954 0.26 -0.2
213,227 - MPMX19_02954 0.26 -0.3
213,227 - MPMX19_02954 0.26 -0.8
213,305 - MPMX19_02954 0.34 +0.8
213,305 - MPMX19_02954 0.34 -0.8
213,478 + MPMX19_02954 0.52 -1.4
213,478 + MPMX19_02954 0.52 +0.1
213,478 + MPMX19_02954 0.52 -1.0
213,478 + MPMX19_02954 0.52 +0.5
213,478 + MPMX19_02954 0.52 -0.9
213,479 - MPMX19_02954 0.52 +0.4
213,479 - MPMX19_02954 0.52 +0.9
213,479 - MPMX19_02954 0.52 -0.2
213,505 + MPMX19_02954 0.54 -0.8
213,505 + MPMX19_02954 0.54 -0.2
213,505 + MPMX19_02954 0.54 +1.4
213,506 - MPMX19_02954 0.54 +0.1
213,506 - MPMX19_02954 0.54 +0.1
213,506 - MPMX19_02954 0.54 +0.6
213,544 + MPMX19_02954 0.58 -1.4
213,544 + MPMX19_02954 0.58 -0.2
213,544 + MPMX19_02954 0.58 -0.2
213,544 + MPMX19_02954 0.58 +1.6
213,568 + MPMX19_02954 0.61 -0.2
213,568 + MPMX19_02954 0.61 -1.1
213,569 - MPMX19_02954 0.61 -1.9
213,640 + MPMX19_02954 0.68 +0.3
213,640 + MPMX19_02954 0.68 -0.8
213,640 + MPMX19_02954 0.68 -1.0
213,640 + MPMX19_02954 0.68 -0.2
213,640 + MPMX19_02954 0.68 -0.8
213,641 - MPMX19_02954 0.68 -0.2
214,087 + MPMX19_02955 0.12 -2.8
214,088 - MPMX19_02955 0.12 -0.0
214,088 - MPMX19_02955 0.12 -1.6
214,088 - MPMX19_02955 0.12 -1.0
214,088 - MPMX19_02955 0.12 -0.4
214,090 + MPMX19_02955 0.13 +0.4
214,090 + MPMX19_02955 0.13 -1.1
214,090 + MPMX19_02955 0.13 -0.0
214,090 + MPMX19_02955 0.13 -0.1
214,090 + MPMX19_02955 0.13 -2.5
214,090 + MPMX19_02955 0.13 -0.4
214,090 + MPMX19_02955 0.13 -0.3
214,090 + MPMX19_02955 0.13 -1.2
214,090 + MPMX19_02955 0.13 -1.4
214,091 - MPMX19_02955 0.13 -1.4
214,091 - MPMX19_02955 0.13 +0.3
214,111 + MPMX19_02955 0.15 +0.7
214,111 + MPMX19_02955 0.15 -1.2
214,111 + MPMX19_02955 0.15 +0.6
214,111 + MPMX19_02955 0.15 -1.4
214,111 + MPMX19_02955 0.15 -0.0
214,111 + MPMX19_02955 0.15 -1.0
214,111 + MPMX19_02955 0.15 -0.4
214,111 + MPMX19_02955 0.15 -0.9
214,111 + MPMX19_02955 0.15 -0.6
214,111 + MPMX19_02955 0.15 -0.2
214,111 + MPMX19_02955 0.15 +0.7
214,111 + MPMX19_02955 0.15 +0.8
214,111 + MPMX19_02955 0.15 -0.4
214,111 + MPMX19_02955 0.15 -0.2
214,112 - MPMX19_02955 0.15 -0.8
214,112 - MPMX19_02955 0.15 -2.8
214,112 - MPMX19_02955 0.15 -0.0
214,112 - MPMX19_02955 0.15 -1.4
214,112 - MPMX19_02955 0.15 -0.9
214,112 - MPMX19_02955 0.15 +0.6
214,645 + MPMX19_02955 0.69 +0.4
214,645 + MPMX19_02955 0.69 -0.0
214,645 + MPMX19_02955 0.69 -2.3
214,645 + MPMX19_02955 0.69 -0.7
214,645 + MPMX19_02955 0.69 -0.0
214,645 + MPMX19_02955 0.69 -0.1
214,645 + MPMX19_02955 0.69 -0.3
214,646 - MPMX19_02955 0.69 -0.2
214,646 - MPMX19_02955 0.69 +1.0
214,646 - MPMX19_02955 0.69 +0.4
214,646 - MPMX19_02955 0.69 -1.6
214,646 - MPMX19_02955 0.69 +0.7
214,646 - MPMX19_02955 0.69 -0.2
214,651 + MPMX19_02955 0.69 -0.4
214,651 + MPMX19_02955 0.69 -0.4
214,651 + MPMX19_02955 0.69 -0.2
214,651 + MPMX19_02955 0.69 -1.4
214,651 + MPMX19_02955 0.69 +0.7
214,651 + MPMX19_02955 0.69 -1.8
214,651 + MPMX19_02955 0.69 -1.2
214,651 + MPMX19_02955 0.69 -2.1
214,651 + MPMX19_02955 0.69 +0.5
214,651 + MPMX19_02955 0.69 -0.4
214,652 - MPMX19_02955 0.69 +0.0
214,652 - MPMX19_02955 0.69 -0.6
214,652 - MPMX19_02955 0.69 -1.3
214,652 - MPMX19_02955 0.69 -1.1
214,652 - MPMX19_02955 0.69 -0.8
214,727 - MPMX19_02955 0.77 -1.2
214,738 + MPMX19_02955 0.78 -1.0
214,739 - MPMX19_02955 0.78 -0.9
214,739 - MPMX19_02955 0.78 +0.4
214,739 - MPMX19_02955 0.78 +0.8
214,936 + +0.3
214,936 + -1.5
214,937 - -1.1
214,937 - -0.0

Or see this region's nucleotide sequence