Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01899

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
1,981,854	+		MPMX19_01898	0.53	-0.6
1,981,854	+		MPMX19_01898	0.53	-2.3
1,981,854	+		MPMX19_01898	0.53	-2.2
1,981,854	+		MPMX19_01898	0.53	+0.3
1,981,855	-		MPMX19_01898	0.53	+1.2
1,981,855	-		MPMX19_01898	0.53	-1.6
1,981,855	-		MPMX19_01898	0.53	-0.1
1,981,855	-		MPMX19_01898	0.53	-0.2
1,981,855	-		MPMX19_01898	0.53	+0.4
1,981,855	-		MPMX19_01898	0.53	+0.5
1,981,855	-		MPMX19_01898	0.53	-0.4
1,981,855	-		MPMX19_01898	0.53	+0.2
1,981,855	-		MPMX19_01898	0.53	-0.6
1,981,855	-		MPMX19_01898	0.53	+0.0
1,981,855	-		MPMX19_01898	0.53	-1.6
1,981,861	+		MPMX19_01898	0.54	-1.3
1,981,861	+		MPMX19_01898	0.54	-0.8
1,981,861	+		MPMX19_01898	0.54	-0.5
1,981,861	+		MPMX19_01898	0.54	+0.8
1,981,861	+		MPMX19_01898	0.54	+0.1
1,981,861	+		MPMX19_01898	0.54	+0.3
1,981,861	+		MPMX19_01898	0.54	-1.3
1,981,861	+		MPMX19_01898	0.54	+0.5
1,981,861	+		MPMX19_01898	0.54	-1.5
1,981,861	+		MPMX19_01898	0.54	-0.2
1,981,861	+		MPMX19_01898	0.54	-0.8
1,981,861	+		MPMX19_01898	0.54	+0.5
1,981,862	-		MPMX19_01898	0.54	+0.9
1,981,862	-		MPMX19_01898	0.54	-0.5
1,981,862	-		MPMX19_01898	0.54	-0.4
1,981,862	-		MPMX19_01898	0.54	-0.6
1,982,238	+		MPMX19_01898	0.88	-1.6
1,982,238	+		MPMX19_01898	0.88	-2.7
1,982,238	+		MPMX19_01898	0.88	-0.4
1,982,238	+		MPMX19_01898	0.88	-1.2
1,982,238	+		MPMX19_01898	0.88	-2.4
1,982,238	+		MPMX19_01898	0.88	-0.9
1,982,238	+		MPMX19_01898	0.88	-0.3
1,982,238	+		MPMX19_01898	0.88	-0.3
1,982,238	+		MPMX19_01898	0.88	-0.3
1,982,238	+		MPMX19_01898	0.88	+0.3
1,982,239	-		MPMX19_01898	0.88	-0.8
1,982,239	-		MPMX19_01898	0.88	-1.2
1,982,239	-		MPMX19_01898	0.88	-0.1
1,982,239	-		MPMX19_01898	0.88	+2.1
1,982,239	-		MPMX19_01898	0.88	-0.7
1,982,239	-		MPMX19_01898	0.88	+0.0
1,982,239	-		MPMX19_01898	0.88	+1.5
1,982,239	-		MPMX19_01898	0.88	-0.4
1,982,239	-		MPMX19_01898	0.88	+0.5
1,982,239	-		MPMX19_01898	0.88	+0.1
1,982,461	+				-1.3
1,982,461	+				-2.3
1,982,461	+				-0.2
1,982,461	+				+1.3
1,982,461	+				-0.8
1,982,461	+				-1.3
1,982,461	+				+1.2
1,982,461	+				-1.2
1,982,461	+				+0.1
1,982,461	+				+0.2
1,982,461	+				-0.9
1,982,461	+				-0.6
1,982,461	+				-0.4
1,982,462	-				-0.1
1,982,462	-				-1.1
1,982,462	-				-0.8
1,982,462	-				+0.2
1,982,462	-				-0.7
1,982,462	-				-0.1
1,982,462	-				+0.9
1,982,462	-				-0.8
1,982,462	-				-0.9
1,982,462	-				+0.0
1,982,462	-				-0.9
1,982,462	-				+0.3
1,982,462	-				+3.1
1,982,462	-				-1.3
1,982,463	+				-0.5
1,982,463	+				-0.9
1,982,463	+				+0.2
1,982,463	+				-0.9
1,982,463	+				-0.1
1,982,463	+				+0.7
1,982,463	+				-0.7
1,982,463	+				+0.6
1,982,463	+				-1.1
1,982,463	+				-0.5
1,982,463	+				+0.2
1,982,463	+				+0.2
1,982,463	+				-0.8
1,982,463	+				-1.8
1,982,463	+				-1.3
1,982,463	+				-0.5
1,982,464	-				+1.0
1,982,464	-				-0.3
1,982,464	-				-0.1
1,982,464	-				-0.9
1,982,464	-				+1.2
1,982,464	-				-1.3
1,982,464	-				-0.1
1,982,464	-				-0.4
1,982,464	-				+0.5
1,982,464	-				-1.3
1,982,464	-				-0.1
1,982,464	-				+0.2
1,982,464	-				-1.1
1,982,464	-				-0.9
1,982,464	-				-0.5
1,982,464	-				-1.3
1,982,464	-				-3.0
1,982,464	-				-0.5
1,982,602	+				+0.5
1,982,602	+				-0.4
1,982,634	+				-0.8
1,982,634	+				+0.0
1,982,634	+				-1.3
1,982,635	-				-0.3
1,982,635	-				-0.8
1,982,635	-				-0.5
1,982,635	-				-2.3
1,982,683	-				+1.3
1,982,733	+				-0.2
1,982,734	-				+0.4
1,982,734	-				-0.5
1,982,734	-				+1.2
1,982,734	-				-2.4
1,982,816	+				-0.8
1,982,923	+				-1.5
1,982,923	+				-0.2
1,982,923	+				-0.5
1,982,923	+				+1.5
1,982,923	+				+0.4
1,982,923	+				+0.4
1,982,923	+				-1.0
1,982,923	+				+0.9
1,982,923	+				-0.3
1,982,923	+				-0.3
1,982,923	+				-1.6
1,982,923	+				-1.8
1,982,924	-				-0.6
1,982,924	-				-0.5
1,982,924	-				-0.6
1,982,924	-				+0.1
1,982,924	-				+0.1
1,982,924	-				-0.4
1,983,129	+		MPMX19_01899	0.17	+0.1
1,983,129	+		MPMX19_01899	0.17	-1.2
1,983,129	+		MPMX19_01899	0.17	+0.8
1,983,129	+		MPMX19_01899	0.17	-1.6
1,983,129	+		MPMX19_01899	0.17	-2.0
1,983,129	+		MPMX19_01899	0.17	-1.3
1,983,129	+		MPMX19_01899	0.17	+0.2
1,983,129	+		MPMX19_01899	0.17	-1.1
1,983,129	+		MPMX19_01899	0.17	+0.2
1,983,130	-		MPMX19_01899	0.17	+0.1
1,983,130	-		MPMX19_01899	0.17	+1.8
1,983,130	-		MPMX19_01899	0.17	-1.6
1,983,130	-		MPMX19_01899	0.17	-1.6
1,983,130	-		MPMX19_01899	0.17	-0.5
1,983,151	+		MPMX19_01899	0.18	-0.9
1,983,151	+		MPMX19_01899	0.18	-0.8
1,983,152	-		MPMX19_01899	0.18	+1.9
1,983,152	-		MPMX19_01899	0.18	-1.2
1,983,298	+		MPMX19_01899	0.25	+0.8
1,983,298	+		MPMX19_01899	0.25	+0.4
1,983,298	+		MPMX19_01899	0.25	-1.9
1,983,298	+		MPMX19_01899	0.25	-0.8
1,983,298	+		MPMX19_01899	0.25	-1.7
1,983,299	-		MPMX19_01899	0.25	-0.1
1,983,299	-		MPMX19_01899	0.25	-0.9
1,983,299	-		MPMX19_01899	0.25	+0.4
1,983,299	-		MPMX19_01899	0.25	+0.2
1,983,299	-		MPMX19_01899	0.25	+0.3
1,983,299	-		MPMX19_01899	0.25	-1.5
1,983,299	-		MPMX19_01899	0.25	+0.2
1,983,355	+		MPMX19_01899	0.28	-0.8
1,983,355	+		MPMX19_01899	0.28	+0.0
1,983,355	+		MPMX19_01899	0.28	-1.3
1,983,355	+		MPMX19_01899	0.28	-1.3
1,983,355	+		MPMX19_01899	0.28	+0.4
1,983,355	+		MPMX19_01899	0.28	+0.9
1,983,355	+		MPMX19_01899	0.28	+0.9
1,983,355	+		MPMX19_01899	0.28	-2.1
1,983,356	-		MPMX19_01899	0.28	-0.8
1,983,356	-		MPMX19_01899	0.28	+1.2
1,983,356	-		MPMX19_01899	0.28	+0.4
1,983,356	-		MPMX19_01899	0.28	-2.8
1,983,481	+		MPMX19_01899	0.34	+0.2
1,983,481	+		MPMX19_01899	0.34	+0.2
1,983,481	+		MPMX19_01899	0.34	-0.6
1,983,481	+		MPMX19_01899	0.34	+0.3
1,983,481	+		MPMX19_01899	0.34	-1.8
1,983,481	+		MPMX19_01899	0.34	-1.3
1,983,481	+		MPMX19_01899	0.34	-0.8
1,983,481	+		MPMX19_01899	0.34	+1.0
1,983,481	+		MPMX19_01899	0.34	-2.0
1,983,481	+		MPMX19_01899	0.34	+0.9
1,983,481	+		MPMX19_01899	0.34	-2.1
1,983,481	+		MPMX19_01899	0.34	+1.8
1,983,481	+		MPMX19_01899	0.34	+0.7
1,983,482	-		MPMX19_01899	0.34	-0.5
1,983,482	-		MPMX19_01899	0.34	-0.7
1,983,482	-		MPMX19_01899	0.34	-0.4
1,983,482	-		MPMX19_01899	0.34	-0.1
1,983,482	-		MPMX19_01899	0.34	+0.7
1,983,482	-		MPMX19_01899	0.34	+0.5
1,983,482	-		MPMX19_01899	0.34	-1.5
1,983,502	+		MPMX19_01899	0.35	+1.1
1,983,502	+		MPMX19_01899	0.35	+0.0
1,983,502	+		MPMX19_01899	0.35	+0.6
1,983,502	+		MPMX19_01899	0.35	-0.3
1,983,502	+		MPMX19_01899	0.35	-0.3
1,983,502	+		MPMX19_01899	0.35	-0.5
1,983,502	+		MPMX19_01899	0.35	+0.3
1,983,502	+		MPMX19_01899	0.35	-0.1
1,983,502	+		MPMX19_01899	0.35	-1.0
1,983,502	+		MPMX19_01899	0.35	-0.5
1,983,502	+		MPMX19_01899	0.35	-0.5
1,983,502	+		MPMX19_01899	0.35	-1.6
1,983,502	+		MPMX19_01899	0.35	-0.3
1,983,502	+		MPMX19_01899	0.35	+0.3
1,983,502	+		MPMX19_01899	0.35	-0.1
1,983,502	+		MPMX19_01899	0.35	-0.1
1,983,502	+		MPMX19_01899	0.35	-0.2
1,983,502	+		MPMX19_01899	0.35	-0.6
1,983,502	+		MPMX19_01899	0.35	+0.9
1,983,502	+		MPMX19_01899	0.35	-0.5
1,983,502	+		MPMX19_01899	0.35	-1.3
1,983,502	+		MPMX19_01899	0.35	-1.5
1,983,502	+		MPMX19_01899	0.35	-0.3
1,983,502	+		MPMX19_01899	0.35	-0.8
1,983,502	+		MPMX19_01899	0.35	+0.6
1,983,502	+		MPMX19_01899	0.35	-0.0
1,983,502	+		MPMX19_01899	0.35	+0.5
1,983,503	-		MPMX19_01899	0.35	-0.1
1,983,503	-		MPMX19_01899	0.35	+1.1
1,983,503	-		MPMX19_01899	0.35	-0.3
1,983,503	-		MPMX19_01899	0.35	+0.2
1,983,503	-		MPMX19_01899	0.35	-0.9
1,983,503	-		MPMX19_01899	0.35	-0.3
1,983,503	-		MPMX19_01899	0.35	-0.9
1,983,503	-		MPMX19_01899	0.35	+0.4
1,983,503	-		MPMX19_01899	0.35	-0.8
1,983,503	-		MPMX19_01899	0.35	-0.2
1,983,503	-		MPMX19_01899	0.35	-0.3
1,983,503	-		MPMX19_01899	0.35	+0.2
1,983,503	-		MPMX19_01899	0.35	-0.6
1,983,503	-		MPMX19_01899	0.35	-1.1
1,983,503	-		MPMX19_01899	0.35	+0.1
1,983,503	-		MPMX19_01899	0.35	+0.0
1,984,257	+		MPMX19_01899	0.73	-1.1
1,984,557	+		MPMX19_01899	0.88	+1.3
1,984,557	+		MPMX19_01899	0.88	-1.4
1,984,557	+		MPMX19_01899	0.88	-0.9
1,984,557	+		MPMX19_01899	0.88	-0.6
1,984,557	+		MPMX19_01899	0.88	+0.3
1,984,558	-		MPMX19_01899	0.88	-0.2
1,984,558	-		MPMX19_01899	0.88	-0.7
1,984,558	-		MPMX19_01899	0.88	-0.1
1,984,558	-		MPMX19_01899	0.88	-0.9
1,984,558	-		MPMX19_01899	0.88	-1.6
1,984,558	-		MPMX19_01899	0.88	+0.7
1,984,558	-		MPMX19_01899	0.88	+0.3
1,984,558	-		MPMX19_01899	0.88	-1.9
1,984,558	-		MPMX19_01899	0.88	-0.7
1,984,558	-		MPMX19_01899	0.88	-1.1
1,984,558	-		MPMX19_01899	0.88	-1.9
1,984,558	-		MPMX19_01899	0.88	-1.1
1,984,558	-		MPMX19_01899	0.88	-0.3
1,984,558	-		MPMX19_01899	0.88	-0.1
1,984,798	+				-0.1
1,984,798	+				-0.1
1,984,836	+				+0.7
1,984,836	+				-1.6
1,984,836	+				+0.4
1,984,836	+				+0.3
1,984,836	+				-1.1
1,984,837	-				-1.4
1,984,837	-				+1.1
1,984,837	-				+0.3
1,984,916	+				+0.6
1,984,916	+				-0.9
1,984,916	+				-0.3
1,984,916	+				+1.1
1,984,916	+				-1.3
1,984,916	+				-0.7
1,984,916	+				-0.5
1,984,916	+				-2.2
1,984,917	-				-1.0
1,984,917	-				-1.8
1,984,917	-				-1.8
1,984,953	+				-0.1
1,984,953	+				-0.2
1,984,953	+				+0.5
1,984,953	+				-0.6
1,984,953	+				+0.2
1,984,953	+				-0.8
1,984,953	+				-0.3
1,984,953	+				+0.5
1,984,953	+				-1.6
1,984,953	+				+1.9
1,984,953	+				-0.5
1,984,953	+				-0.2
1,984,953	+				-0.3
1,984,953	+				+0.3
1,984,953	+				+1.2
1,984,953	+				-1.3
1,984,953	+				-0.1
1,984,953	+				-0.9
1,984,954	-				-1.8
1,984,954	-				-1.5
1,984,954	-				-0.5
1,984,954	-				+0.2
1,984,954	-				-1.9
1,984,954	-				-0.2
1,984,954	-				-0.2
1,984,954	-				-1.4
1,984,954	-				-1.4
1,984,954	-				+0.8
1,984,954	-				-1.8
1,984,954	-				-1.1
1,984,954	-				-1.3
1,984,954	-				+0.1
1,984,954	-				-0.6
1,984,954	-				-0.6
1,984,954	-				-2.1
1,985,307	-		MPMX19_01900	0.52	-0.8
1,985,700	+				+0.1
1,985,700	+				+0.6
1,985,700	+				+0.0
1,985,700	+				+0.6
1,985,700	+				-1.3
1,985,700	+				-0.7
1,985,700	+				-1.8
1,985,701	-				+0.1
1,985,701	-				-0.2
1,985,701	-				-1.5
1,985,701	-				-0.9
1,985,701	-				-0.7
1,985,711	+				+1.1
1,985,711	+				-1.5
1,985,712	-				-1.2
1,985,712	-				-0.8
1,985,712	-				-0.5
1,985,712	-				-0.5
1,985,712	-				+0.1
1,985,712	-				-1.1
1,985,712	-				-0.8