Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01490

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM; ambient oxygen
				remove
1,561,804	+	MPMX19_01487	0.58	+0.7
1,561,804	+	MPMX19_01487	0.58	-0.0
1,561,804	+	MPMX19_01487	0.58	-0.9
1,561,804	+	MPMX19_01487	0.58	-1.5
1,561,804	+	MPMX19_01487	0.58	+0.5
1,561,804	+	MPMX19_01487	0.58	-0.3
1,561,804	+	MPMX19_01487	0.58	-2.3
1,561,805	-	MPMX19_01487	0.59	-1.7
1,561,805	-	MPMX19_01487	0.59	-1.6
1,561,805	-	MPMX19_01487	0.59	-0.1
1,561,932	+			-3.3
1,561,932	+			-0.4
1,561,932	+			-0.6
1,561,932	+			-0.9
1,561,932	+			-0.7
1,561,932	+			-1.4
1,561,932	+			+0.2
1,561,932	+			-0.4
1,561,932	+			-0.5
1,561,932	+			-0.6
1,561,932	+			-0.6
1,561,932	+			-0.2
1,561,932	+			+0.2
1,561,932	+			-0.5
1,561,932	+			-1.7
1,561,932	+			+0.3
1,561,932	+			-1.6
1,561,932	+			+0.2
1,561,933	-			+0.6
1,561,933	-			+0.4
1,561,933	-			+0.8
1,561,933	-			+0.5
1,561,933	-			+0.2
1,561,933	-			+0.8
1,561,933	-			-0.1
1,561,933	-			+0.2
1,561,933	-			-1.3
1,561,933	-			-0.1
1,561,933	-			-0.6
1,561,933	-			-0.8
1,561,933	-			+0.1
1,561,933	-			-0.7
1,561,933	-			-0.1
1,561,933	-			-1.3
1,561,933	-			-0.7
1,561,933	-			-0.0
1,561,933	-			+0.2
1,561,933	-			-1.5
1,561,933	-			-1.1
1,561,933	-			+1.0
1,561,933	-			-0.1
1,562,049	+			+0.3
1,562,049	+			+1.7
1,562,049	+			-0.2
1,562,050	-			-0.8
1,562,050	-			-0.2
1,562,050	-			-0.7
1,562,056	-			-1.9
1,562,056	-			+0.3
1,562,537	+			-0.5
1,562,537	+			+1.1
1,562,537	+			-2.6
1,562,537	+			-2.3
1,562,537	+			+0.3
1,562,537	+			+0.6
1,562,538	-			-0.3
1,562,538	-			-0.8
1,562,538	-			-0.1
1,562,538	-			-0.8
1,562,538	-			+0.1
1,562,538	-			-0.1
1,562,538	-			-0.8
1,562,576	+			+0.5
1,562,576	+			-0.6
1,562,576	+			+0.2
1,562,576	+			-0.9
1,562,576	+			+1.5
1,562,576	+			-2.2
1,562,576	+			-1.6
1,562,576	+			-1.1
1,562,576	+			+0.6
1,562,576	+			-0.4
1,562,576	+			+0.6
1,562,576	+			+0.2
1,562,576	+			-0.7
1,562,576	+			+0.3
1,562,576	+			+0.2
1,562,576	+			+0.7
1,562,576	+			-0.7
1,562,576	+			-0.8
1,562,576	+			-0.3
1,562,576	+			-0.8
1,562,576	+			+0.5
1,562,576	+			-1.6
1,562,576	+			-0.5
1,562,576	+			-0.9
1,562,576	+			-0.8
1,562,576	+			+0.7
1,562,576	+			+0.4
1,562,576	+			+0.4
1,562,576	+			-0.7
1,562,576	+			+0.4
1,562,576	+			-0.2
1,562,576	+			-0.2
1,562,576	+			-1.1
1,562,576	+			+0.9
1,562,576	+			-0.7
1,562,576	+			+0.8
1,562,576	+			+1.1
1,562,576	+			+0.5
1,562,576	+			-0.3
1,562,577	-			+0.1
1,562,577	-			+0.4
1,562,577	-			-0.3
1,562,577	-			-0.4
1,562,577	-			+0.2
1,562,577	-			-0.7
1,562,577	-			-1.0
1,562,577	-			-0.8
1,562,577	-			+0.2
1,562,577	-			-1.4
1,562,577	-			-0.2
1,562,577	-			-0.9
1,562,577	-			-1.4
1,562,577	-			-2.2
1,562,577	-			-0.9
1,562,577	-			+0.5
1,562,577	-			-1.0
1,562,577	-			-0.1
1,562,577	-			+0.3
1,562,577	-			-0.1
1,562,577	-			+0.4
1,562,577	-			+0.5
1,562,577	-			+0.7
1,562,577	-			+0.6
1,562,577	-			+0.2
1,562,577	-			-1.2
1,562,577	-			-0.1
1,562,577	-			+0.7
1,562,577	-			+1.4
1,562,577	-			-1.3
1,562,577	-			-0.8
1,562,577	-			-1.3
1,562,577	-			-0.5
1,562,577	-			+0.2
1,562,577	-			-0.3
1,562,577	-			+0.4
1,562,577	-			+0.5
1,562,577	-			+0.3
1,562,615	+			+0.1
1,562,615	+			+1.3
1,562,616	-			-1.7
1,562,622	+			+0.6
1,562,622	+			-1.5
1,562,623	-			+0.8
1,562,623	-			+0.9
1,562,693	+			-1.1
1,562,693	+			-0.3
1,562,693	+			-0.2
1,562,693	+			-2.3
1,562,693	+			-0.6
1,562,693	+			-0.8
1,562,693	+			-0.1
1,562,693	+			-0.5
1,562,693	+			-1.1
1,562,693	+			-0.7
1,562,693	+			-1.3
1,562,693	+			+0.5
1,562,693	+			+0.0
1,562,694	-			+0.3
1,562,694	-			-0.1
1,562,694	-			-0.5
1,562,694	-			-1.7
1,562,694	-			-0.1
1,562,694	-			-0.9
1,562,694	-			+0.2
1,562,694	-			+0.4
1,562,694	-			+0.8
1,562,694	-			+0.1
1,562,694	-			+0.7
1,562,694	-			+0.8
1,562,694	-			-0.5
1,562,694	-			-0.1
1,562,700	-			-0.7
1,562,700	-			+0.7
1,562,705	-			+0.1
1,562,705	-			-0.5
1,562,952	+	MPMX19_01490	0.25	+0.3
1,563,103	+	MPMX19_01490	0.38	+0.5
1,563,104	-	MPMX19_01490	0.38	-0.3
1,563,152	+	MPMX19_01490	0.42	-0.7
1,563,152	+	MPMX19_01490	0.42	-0.7
1,563,152	+	MPMX19_01490	0.42	-1.3
1,563,152	+	MPMX19_01490	0.42	+0.3
1,563,152	+	MPMX19_01490	0.42	+0.2
1,563,152	+	MPMX19_01490	0.42	-1.6
1,563,152	+	MPMX19_01490	0.42	-1.4
1,563,152	+	MPMX19_01490	0.42	-1.2
1,563,152	+	MPMX19_01490	0.42	+0.1
1,563,152	+	MPMX19_01490	0.42	+1.1
1,563,152	+	MPMX19_01490	0.42	-0.2
1,563,153	-	MPMX19_01490	0.42	-0.6
1,563,153	-	MPMX19_01490	0.42	-0.1
1,563,153	-	MPMX19_01490	0.42	+1.1
1,563,153	-	MPMX19_01490	0.42	+0.3
1,563,153	-	MPMX19_01490	0.42	-1.2
1,563,180	+	MPMX19_01490	0.45	-0.3
1,563,180	+	MPMX19_01490	0.45	-0.5
1,563,239	+	MPMX19_01490	0.50	+0.4
1,563,295	-	MPMX19_01490	0.55	+0.7
1,563,338	+	MPMX19_01490	0.58	-0.2
1,563,338	+	MPMX19_01490	0.58	-1.7
1,563,339	-	MPMX19_01490	0.58	-0.9
1,563,450	-	MPMX19_01490	0.68	-0.8
1,563,450	-	MPMX19_01490	0.68	-1.3
1,563,450	-	MPMX19_01490	0.68	-1.1
1,563,608	+	MPMX19_01490	0.81	-0.0
1,563,608	+	MPMX19_01490	0.81	+0.2
1,563,608	+	MPMX19_01490	0.81	-0.5
1,563,608	+	MPMX19_01490	0.81	+0.5
1,563,608	+	MPMX19_01490	0.81	-0.9
1,563,608	+	MPMX19_01490	0.81	-1.0
1,563,608	+	MPMX19_01490	0.81	+0.8
1,563,609	-	MPMX19_01490	0.82	+0.4
1,563,609	-	MPMX19_01490	0.82	-0.1
1,563,609	-	MPMX19_01490	0.82	-0.5
1,563,609	-	MPMX19_01490	0.82	+0.4
1,563,609	-	MPMX19_01490	0.82	+0.1
1,563,623	-	MPMX19_01490	0.83	-0.5
1,563,690	-	MPMX19_01490	0.88	-0.4
1,563,821	+			+1.0
1,563,821	+			+0.3
1,563,821	+			-0.2
1,563,821	+			+1.5
1,563,822	-			-0.7
1,563,822	-			-1.0
1,563,822	-			-1.5
1,563,822	-			-1.7
1,563,822	-			-0.3
1,563,971	+	MPMX19_01491	0.84	-1.0
1,563,971	+	MPMX19_01491	0.84	+0.5
1,563,972	-	MPMX19_01491	0.85	-0.3
1,564,379	+	MPMX19_01492	0.29	+0.2
1,564,379	+	MPMX19_01492	0.29	+0.6
1,564,379	+	MPMX19_01492	0.29	-0.2
1,564,379	+	MPMX19_01492	0.29	-1.2
1,564,380	-	MPMX19_01492	0.29	-0.5
1,564,380	-	MPMX19_01492	0.29	+0.9
1,564,380	-	MPMX19_01492	0.29	-0.4
1,564,380	-	MPMX19_01492	0.29	-0.5
1,564,380	-	MPMX19_01492	0.29	-2.1
1,564,385	+	MPMX19_01492	0.30	-0.6
1,564,385	+	MPMX19_01492	0.30	+1.5
1,564,385	+	MPMX19_01492	0.30	-2.4
1,564,385	+	MPMX19_01492	0.30	+1.1
1,564,386	-	MPMX19_01492	0.30	-0.7
1,564,386	-	MPMX19_01492	0.30	+0.3
1,564,386	-	MPMX19_01492	0.30	-0.9
1,564,386	-	MPMX19_01492	0.30	-0.7
1,564,386	-	MPMX19_01492	0.30	+2.3
1,564,601	+	MPMX19_01492	0.82	-0.3
1,564,601	+	MPMX19_01492	0.82	+0.3
1,564,602	-	MPMX19_01492	0.82	-1.4
1,564,602	-	MPMX19_01492	0.82	+0.2
1,564,602	-	MPMX19_01492	0.82	-0.5
1,564,602	-	MPMX19_01492	0.82	-1.1
1,564,602	-	MPMX19_01492	0.82	-0.2
1,564,649	+			-0.9
1,564,649	+			-0.4
1,564,649	+			-1.2
1,564,649	+			-0.2
1,564,649	+			+0.5
1,564,649	+			-0.5
1,564,650	-			-1.7
1,564,650	-			+0.1
1,564,650	-			-0.6
1,564,650	-			-0.4
1,564,650	-			-0.1
1,564,650	-			-0.9
1,564,650	-			-1.2
1,564,650	-			-0.6
1,564,650	-			+0.7
1,564,722	+			-1.5
1,564,722	+			+0.2
1,564,722	+			+0.4
1,564,722	+			-0.9
1,564,722	+			+0.1
1,564,722	+			+0.1
1,564,722	+			-0.8
1,564,723	-			-0.4
1,564,723	-			+0.0
1,564,723	-			-1.8
1,564,723	-			+0.1
1,564,723	-			+0.1
1,564,724	+			-0.6
1,564,724	+			+1.9
1,564,724	+			-0.7
1,564,724	+			-1.2
1,564,724	+			-1.1
1,564,724	+			+0.5
1,564,724	+			+0.8
1,564,724	+			-0.5
1,564,724	+			-0.8
1,564,724	+			+1.8
1,564,725	-			-1.1
1,564,725	-			-1.7
1,564,725	-			+0.5
1,564,725	-			-0.8
1,564,725	-			-0.6
1,564,725	-			-0.3
1,564,725	-			-1.3
1,564,725	-			+0.3
1,564,725	-			+1.3
1,564,725	-			-0.6
1,564,725	-			-0.1
1,564,725	-			-0.9
1,564,725	-			+0.1
1,564,725	-			-0.2
1,564,725	-			-0.8
1,564,725	-			-0.6
1,564,725	-			-0.3
1,564,725	-			+0.8

Or see this region's nucleotide sequence