Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00908

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
941,474	+				-0.5
941,475	-				+0.1
941,478	+				-0.8
941,478	+				-0.1
941,478	+				+0.1
941,478	+				-0.7
941,478	+				+0.4
941,478	+				-0.3
941,478	+				+0.8
941,478	+				+0.2
941,478	+				-2.2
941,478	+				+0.2
941,479	-				+0.2
941,479	-				-0.3
941,479	-				+2.2
941,479	-				-0.3
941,489	+				+0.3
941,490	-				+0.7
941,490	-				-1.8
941,490	-				+0.4
941,715	+		MPMX19_00907	0.28	-1.3
941,715	+		MPMX19_00907	0.28	-0.3
941,715	+		MPMX19_00907	0.28	+0.5
941,748	+		MPMX19_00907	0.33	+2.7
941,749	-		MPMX19_00907	0.33	-0.3
941,749	-		MPMX19_00907	0.33	+0.1
941,823	+		MPMX19_00907	0.44	-0.3
941,824	-		MPMX19_00907	0.44	+0.0
941,824	-		MPMX19_00907	0.44	+1.1
941,824	-		MPMX19_00907	0.44	-0.1
941,874	+		MPMX19_00907	0.51	-0.3
941,875	-		MPMX19_00907	0.51	+0.7
941,875	-		MPMX19_00907	0.51	-1.1
941,875	-		MPMX19_00907	0.51	+0.1
941,970	+		MPMX19_00907	0.64	+0.1
941,970	+		MPMX19_00907	0.64	-1.3
941,970	+		MPMX19_00907	0.64	-0.9
941,971	-		MPMX19_00907	0.65	+1.1
941,971	-		MPMX19_00907	0.65	+0.5
941,982	+		MPMX19_00907	0.66	+0.1
941,983	-		MPMX19_00907	0.66	-0.3
942,024	+		MPMX19_00907	0.72	+2.0
942,024	+		MPMX19_00907	0.72	+0.2
942,024	+		MPMX19_00907	0.72	+0.2
942,024	+		MPMX19_00907	0.72	-1.7
942,024	+		MPMX19_00907	0.72	-1.7
942,024	+		MPMX19_00907	0.72	+0.5
942,024	+		MPMX19_00907	0.72	-2.9
942,024	+		MPMX19_00907	0.72	+0.1
942,025	-		MPMX19_00907	0.72	-2.1
942,025	-		MPMX19_00907	0.72	-0.3
942,025	-		MPMX19_00907	0.72	+0.5
942,025	-		MPMX19_00907	0.72	-0.1
942,025	-		MPMX19_00907	0.72	+0.7
942,025	-		MPMX19_00907	0.72	+0.1
942,025	-		MPMX19_00907	0.72	+0.5
942,323	+				+0.0
942,323	+				-0.4
942,323	+				-1.3
942,323	+				+0.7
942,323	+				+1.1
942,324	-				-0.8
942,324	-				-0.3
942,324	-				-0.7
942,324	-				-1.3
942,324	-				+1.0
942,388	+				+0.1
942,658	+		MPMX19_00908	0.11	+0.5
942,658	+		MPMX19_00908	0.11	+1.3
942,658	+		MPMX19_00908	0.11	+0.2
942,658	+		MPMX19_00908	0.11	-1.8
942,658	+		MPMX19_00908	0.11	-0.3
942,658	+		MPMX19_00908	0.11	-1.3
942,658	+		MPMX19_00908	0.11	+0.6
942,658	+		MPMX19_00908	0.11	-3.0
942,658	+		MPMX19_00908	0.11	-0.5
942,658	+		MPMX19_00908	0.11	+0.4
942,658	+		MPMX19_00908	0.11	+0.2
942,658	+		MPMX19_00908	0.11	+0.4
942,658	+		MPMX19_00908	0.11	-0.7
942,659	-		MPMX19_00908	0.11	-0.1
942,659	-		MPMX19_00908	0.11	+1.0
942,659	-		MPMX19_00908	0.11	-2.4
942,659	-		MPMX19_00908	0.11	-0.3
942,659	-		MPMX19_00908	0.11	-1.1
942,659	-		MPMX19_00908	0.11	+0.1
942,659	-		MPMX19_00908	0.11	-0.3
942,659	-		MPMX19_00908	0.11	+0.7
942,659	-		MPMX19_00908	0.11	-1.0
942,659	-		MPMX19_00908	0.11	+0.7
942,659	-		MPMX19_00908	0.11	-0.9
942,659	-		MPMX19_00908	0.11	+0.1
942,659	-		MPMX19_00908	0.11	-0.3
942,659	-		MPMX19_00908	0.11	-2.1
942,659	-		MPMX19_00908	0.11	+0.7
942,659	-		MPMX19_00908	0.11	-0.5
942,659	-		MPMX19_00908	0.11	-0.8
942,659	-		MPMX19_00908	0.11	+0.5
942,659	-		MPMX19_00908	0.11	-0.8
942,659	-		MPMX19_00908	0.11	+1.0
942,659	-		MPMX19_00908	0.11	-0.2
942,659	-		MPMX19_00908	0.11	+0.0
942,659	-		MPMX19_00908	0.11	-0.1
942,659	-		MPMX19_00908	0.11	-0.5
942,659	-		MPMX19_00908	0.11	+0.2
942,659	-		MPMX19_00908	0.11	-0.1
942,659	-		MPMX19_00908	0.11	-0.3
942,659	-		MPMX19_00908	0.11	-2.1
942,784	+		MPMX19_00908	0.16	-0.5
942,784	+		MPMX19_00908	0.16	-0.1
942,784	+		MPMX19_00908	0.16	+0.0
942,784	+		MPMX19_00908	0.16	+0.3
942,784	+		MPMX19_00908	0.16	-1.1
942,785	-		MPMX19_00908	0.16	+0.5
942,785	-		MPMX19_00908	0.16	+1.0
942,785	-		MPMX19_00908	0.16	-0.7
942,785	-		MPMX19_00908	0.16	+0.8
942,785	-		MPMX19_00908	0.16	-1.7
942,785	-		MPMX19_00908	0.16	-1.5
942,785	-		MPMX19_00908	0.16	+0.2
942,785	-		MPMX19_00908	0.16	-0.5
943,009	+		MPMX19_00908	0.24	+0.3
943,009	+		MPMX19_00908	0.24	-0.1
943,009	+		MPMX19_00908	0.24	+0.2
943,009	+		MPMX19_00908	0.24	+2.2
943,009	+		MPMX19_00908	0.24	-0.1
943,010	-		MPMX19_00908	0.24	-1.7
943,010	-		MPMX19_00908	0.24	-0.8
943,010	-		MPMX19_00908	0.24	-0.9
943,010	-		MPMX19_00908	0.24	+0.7
943,010	-		MPMX19_00908	0.24	-1.0
943,010	-		MPMX19_00908	0.24	-0.1
943,010	-		MPMX19_00908	0.24	-0.3
943,010	-		MPMX19_00908	0.24	-1.1
943,010	-		MPMX19_00908	0.24	-1.1
943,010	-		MPMX19_00908	0.24	+0.9
943,010	-		MPMX19_00908	0.24	+0.4
943,031	+		MPMX19_00908	0.25	+1.5
943,113	-		MPMX19_00908	0.28	-0.5
943,282	+		MPMX19_00908	0.34	-0.0
943,282	+		MPMX19_00908	0.34	+0.1
943,282	+		MPMX19_00908	0.34	+0.3
943,282	+		MPMX19_00908	0.34	+1.2
943,282	+		MPMX19_00908	0.34	+0.5
943,283	-		MPMX19_00908	0.34	-0.0
943,579	+		MPMX19_00908	0.45	-0.0
943,579	+		MPMX19_00908	0.45	+0.7
943,580	-		MPMX19_00908	0.45	-1.1
943,580	-		MPMX19_00908	0.45	-1.7
943,580	-		MPMX19_00908	0.45	-0.1
943,636	+		MPMX19_00908	0.47	+0.3
943,636	+		MPMX19_00908	0.47	+0.4
943,636	+		MPMX19_00908	0.47	-2.2
943,636	+		MPMX19_00908	0.47	+1.3
943,636	+		MPMX19_00908	0.47	-0.1
943,636	+		MPMX19_00908	0.47	+1.7
943,637	-		MPMX19_00908	0.48	-0.8
943,705	+		MPMX19_00908	0.50	+0.0
943,705	+		MPMX19_00908	0.50	-1.0
943,705	+		MPMX19_00908	0.50	+1.6
943,705	+		MPMX19_00908	0.50	-1.9
943,705	+		MPMX19_00908	0.50	-0.6
943,705	+		MPMX19_00908	0.50	-0.6
943,705	+		MPMX19_00908	0.50	+0.4
943,705	+		MPMX19_00908	0.50	-0.1
943,705	+		MPMX19_00908	0.50	-0.8
943,705	+		MPMX19_00908	0.50	+0.2
943,705	+		MPMX19_00908	0.50	-2.1
943,705	+		MPMX19_00908	0.50	-1.7
943,705	+		MPMX19_00908	0.50	+0.8
943,705	+		MPMX19_00908	0.50	-0.3
943,705	+		MPMX19_00908	0.50	-0.8
943,705	+		MPMX19_00908	0.50	+1.5
943,706	-		MPMX19_00908	0.50	-0.4
943,706	-		MPMX19_00908	0.50	-1.6
943,706	-		MPMX19_00908	0.50	-0.1
943,706	-		MPMX19_00908	0.50	-0.8
943,706	-		MPMX19_00908	0.50	+0.4
943,706	-		MPMX19_00908	0.50	-0.8
943,706	-		MPMX19_00908	0.50	+0.2
943,706	-		MPMX19_00908	0.50	+0.3
943,706	-		MPMX19_00908	0.50	+0.4
943,706	-		MPMX19_00908	0.50	-0.5
943,706	-		MPMX19_00908	0.50	-0.1
943,706	-		MPMX19_00908	0.50	-0.8
943,706	-		MPMX19_00908	0.50	-0.3
943,706	-		MPMX19_00908	0.50	-1.8
943,706	-		MPMX19_00908	0.50	-0.5
943,706	-		MPMX19_00908	0.50	+0.7
943,706	-		MPMX19_00908	0.50	-0.3
943,711	+		MPMX19_00908	0.50	+0.5
943,711	+		MPMX19_00908	0.50	-0.4
943,711	+		MPMX19_00908	0.50	-0.9
943,711	+		MPMX19_00908	0.50	+0.3
943,711	+		MPMX19_00908	0.50	-1.2
943,712	-		MPMX19_00908	0.50	-0.8
943,712	-		MPMX19_00908	0.50	-0.6
943,712	-		MPMX19_00908	0.50	-0.4
943,712	-		MPMX19_00908	0.50	+0.1
943,712	-		MPMX19_00908	0.50	-0.4
943,712	-		MPMX19_00908	0.50	+0.3
943,712	-		MPMX19_00908	0.50	-0.2
943,712	-		MPMX19_00908	0.50	+0.1
944,015	+		MPMX19_00908	0.62	-2.0
944,016	-		MPMX19_00908	0.62	+0.2
944,016	-		MPMX19_00908	0.62	+0.8
944,016	-		MPMX19_00908	0.62	-0.1
944,284	+		MPMX19_00908	0.72	-0.1
944,284	+		MPMX19_00908	0.72	+0.4
944,284	+		MPMX19_00908	0.72	+0.4
944,284	+		MPMX19_00908	0.72	+1.3
944,284	+		MPMX19_00908	0.72	+0.5
944,284	+		MPMX19_00908	0.72	+1.0
944,284	+		MPMX19_00908	0.72	-0.1
944,284	+		MPMX19_00908	0.72	-2.0
944,284	+		MPMX19_00908	0.72	+1.2
944,285	-		MPMX19_00908	0.72	-0.4
944,285	-		MPMX19_00908	0.72	-0.3
944,285	-		MPMX19_00908	0.72	-0.2
944,285	-		MPMX19_00908	0.72	-0.3
944,285	-		MPMX19_00908	0.72	-0.5
944,285	-		MPMX19_00908	0.72	+0.5
944,359	+		MPMX19_00908	0.74	-0.6
944,359	+		MPMX19_00908	0.74	+0.8
944,359	+		MPMX19_00908	0.74	+0.2
944,360	-		MPMX19_00908	0.74	-2.4
944,360	-		MPMX19_00908	0.74	+0.2
944,800	+				+1.3
944,800	+				-0.5
944,800	+				-0.5
944,800	+				-1.3
944,801	-				-1.6
944,801	-				+0.5
944,801	-				-0.2
944,926	+				-1.7
944,926	+				-0.7
944,926	+				+0.5
944,927	-				-0.8
944,927	-				+0.5
944,927	-				-0.9
944,927	-				-1.3
944,944	+				+1.9
944,945	-				+0.1
944,945	-				+0.5
944,986	+				-1.0
944,986	+				+0.0
944,986	+				-2.6
944,986	+				-0.8
944,987	-				-0.3
944,987	-				-0.7
944,987	-				+0.1
944,987	-				-0.6
944,987	-				+0.0
944,987	-				+0.5
945,091	+				-0.1
945,091	+				-0.6
945,091	+				+0.1
945,091	+				-0.7
945,092	-				-0.5
945,092	-				+0.7
945,092	-				+0.2
945,092	-				+0.5
945,092	-				-0.3
945,092	-				-0.8
945,092	-				-0.8
945,092	-				-0.6
945,092	-				+0.3
945,092	-				-0.1
945,101	+				-0.2
945,102	-				-0.4
945,102	-				-0.9
945,210	+				-0.5
945,210	+				-0.4
945,210	+				-0.1
945,210	+				+0.7
945,211	-				+0.3
945,211	-				+0.4
945,211	-				-0.6
945,211	-				-0.1
945,211	-				-0.1
945,211	-				+1.9
945,211	-				-0.5
945,211	-				-0.5
945,211	-				+0.7
945,211	-				-0.7
945,211	-				+0.7
945,211	-				+1.5
945,211	-				-0.7
945,211	-				+0.1
945,211	-				-1.0
945,211	-				+0.7
945,216	-				+0.3
945,216	-				-1.3
945,216	-				-0.5
945,216	-				-1.7
945,216	-				-1.7
945,216	-				-1.5
945,216	-				-1.1
945,216	-				-1.0
945,232	+				-0.9
945,446	+		MPMX19_00909	0.37	+1.7
945,446	+		MPMX19_00909	0.37	-1.4
945,446	+		MPMX19_00909	0.37	-1.5
945,494	+		MPMX19_00909	0.46	-0.1
945,494	+		MPMX19_00909	0.46	-2.1
945,494	+		MPMX19_00909	0.46	-0.1
945,494	+		MPMX19_00909	0.46	-1.2
945,494	+		MPMX19_00909	0.46	-0.4
945,494	+		MPMX19_00909	0.46	-2.0
945,495	-		MPMX19_00909	0.47	-0.5
945,495	-		MPMX19_00909	0.47	-0.9
945,495	-		MPMX19_00909	0.47	-0.1
945,495	-		MPMX19_00909	0.47	-2.0
945,495	-		MPMX19_00909	0.47	+0.5
945,598	+		MPMX19_00909	0.66	+0.6
945,598	+		MPMX19_00909	0.66	+0.3
945,599	-		MPMX19_00909	0.66	+0.5
945,599	-		MPMX19_00909	0.66	+0.8
945,605	+		MPMX19_00909	0.67	-0.3
945,605	+		MPMX19_00909	0.67	+0.4
945,605	+		MPMX19_00909	0.67	+0.1
945,605	+		MPMX19_00909	0.67	-1.2
945,605	+		MPMX19_00909	0.67	-0.9
945,606	-		MPMX19_00909	0.67	+0.2
945,606	-		MPMX19_00909	0.67	-1.3
945,606	-		MPMX19_00909	0.67	-0.5
945,606	-		MPMX19_00909	0.67	+0.9
945,606	-		MPMX19_00909	0.67	-0.6
945,798	+				-1.1
945,798	+				+1.2
945,799	-				-1.8
945,799	-				-0.3
945,810	+				+0.5
945,810	+				+0.7
945,810	+				-0.3
945,810	+				+0.3
945,810	+				-0.5
945,810	+				+1.8
945,810	+				+0.2
945,810	+				-0.5
945,810	+				+1.0
945,810	+				-1.1
945,810	+				-0.0
945,810	+				-0.5
945,811	-				+0.3
945,811	-				+1.0
945,811	-				-0.1
945,811	-				+0.3
945,811	-				-1.5
945,811	-				+1.3
945,811	-				+0.8
945,811	-				-0.1
945,811	-				+1.2
945,811	-				-0.7
945,811	-				-1.0
945,811	-				-0.4
945,811	-				-1.0
945,812	+				+0.3
945,812	+				-0.7
945,812	+				-0.9
945,812	+				-0.5
945,812	+				-1.1
945,812	+				+0.0
945,812	+				+0.5
945,812	+				+0.5
945,812	+				+1.5
945,812	+				-0.4
945,812	+				-2.0
945,812	+				+1.0
945,812	+				+0.4
945,812	+				-0.7
945,813	-				+0.4
945,813	-				-0.1
945,813	-				+1.2
945,813	-				-1.1
945,813	-				-0.7
945,813	-				-2.9
945,813	-				-0.1
945,813	-				-2.7
945,813	-				+0.3
945,813	-				+0.2
945,813	-				-0.1
945,813	-				-0.2
945,813	-				-1.2
945,813	-				+0.6
945,813	-				-0.1
945,813	-				-1.5
945,813	-				-0.3