Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00599 and MPMX19_00600 overlap by 11 nucleotides MPMX19_00600 and MPMX19_00601 are separated by 4 nucleotides MPMX19_00601 and MPMX19_00602 overlap by 8 nucleotides MPMX19_00602 and MPMX19_00603 are separated by 91 nucleotides MPMX19_00603 and MPMX19_00604 overlap by 1 nucleotides
MPMX19_00599: MPMX19_00599 - Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB, at 613,993 to 615,261
_00599
MPMX19_00600: MPMX19_00600 - hypothetical protein, at 615,251 to 615,532
_00600
MPMX19_00601: MPMX19_00601 - hypothetical protein, at 615,537 to 615,797
_00601
MPMX19_00602: MPMX19_00602 - Diaminopimelate epimerase, at 615,790 to 616,641
_00602
MPMX19_00603: MPMX19_00603 - hypothetical protein, at 616,733 to 617,161
_00603
MPMX19_00604: MPMX19_00604 - hypothetical protein, at 617,161 to 618,234
_00604
Position (kb) 615
616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 615.276 kb on - strand at 615.276 kb on - strand at 615.276 kb on - strand at 615.276 kb on - strand at 615.276 kb on - strand at 615.276 kb on - strand at 615.276 kb on - strand at 615.276 kb on - strand at 615.276 kb on - strand at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.312 kb on - strand, within MPMX19_00600 at 615.612 kb on - strand, within MPMX19_00601 at 615.612 kb on - strand, within MPMX19_00601 at 615.612 kb on - strand, within MPMX19_00601 at 615.612 kb on - strand, within MPMX19_00601 at 615.612 kb on - strand, within MPMX19_00601 at 615.612 kb on - strand, within MPMX19_00601 at 615.612 kb on - strand, within MPMX19_00601 at 615.612 kb on - strand, within MPMX19_00601 at 615.612 kb on - strand, within MPMX19_00601 at 615.612 kb on - strand, within MPMX19_00601 at 615.612 kb on - strand, within MPMX19_00601 at 615.612 kb on - strand, within MPMX19_00601 at 615.612 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.616 kb on - strand, within MPMX19_00601 at 615.752 kb on - strand, within MPMX19_00601 at 615.752 kb on - strand, within MPMX19_00601 at 615.752 kb on - strand, within MPMX19_00601 at 615.752 kb on - strand, within MPMX19_00601 at 615.752 kb on - strand, within MPMX19_00601 at 615.752 kb on - strand, within MPMX19_00601 at 615.752 kb on - strand, within MPMX19_00601 at 615.752 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.755 kb on - strand, within MPMX19_00601 at 615.762 kb on + strand, within MPMX19_00601 at 615.763 kb on - strand, within MPMX19_00601 at 615.763 kb on - strand, within MPMX19_00601 at 615.763 kb on - strand, within MPMX19_00601 at 615.763 kb on - strand, within MPMX19_00601 at 615.763 kb on - strand, within MPMX19_00601 at 615.763 kb on - strand, within MPMX19_00601 at 615.763 kb on - strand, within MPMX19_00601 at 615.763 kb on - strand, within MPMX19_00601 at 616.652 kb on - strand at 616.652 kb on - strand at 616.652 kb on - strand at 616.652 kb on - strand at 616.652 kb on - strand at 616.652 kb on - strand at 616.652 kb on - strand at 616.652 kb on - strand at 616.652 kb on - strand at 616.652 kb on - strand at 616.652 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.654 kb on - strand at 616.672 kb on - strand at 616.672 kb on - strand at 616.679 kb on + strand at 616.680 kb on - strand at 616.680 kb on - strand at 616.680 kb on - strand at 616.734 kb on + strand at 616.734 kb on + strand at 616.734 kb on + strand at 616.734 kb on + strand at 616.734 kb on + strand at 616.734 kb on + strand at 616.734 kb on + strand at 616.735 kb on - strand at 616.735 kb on - strand at 616.735 kb on - strand at 616.735 kb on - strand at 616.735 kb on - strand at 617.049 kb on + strand, within MPMX19_00603 at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.243 kb on + strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.244 kb on - strand at 617.384 kb on + strand, within MPMX19_00604 at 617.384 kb on + strand, within MPMX19_00604 at 617.384 kb on + strand, within MPMX19_00604 at 617.384 kb on + strand, within MPMX19_00604 at 617.385 kb on - strand, within MPMX19_00604 at 617.385 kb on - strand, within MPMX19_00604 at 617.385 kb on - strand, within MPMX19_00604 at 617.385 kb on - strand, within MPMX19_00604 at 617.385 kb on - strand, within MPMX19_00604 at 617.385 kb on - strand, within MPMX19_00604 at 617.385 kb on - strand, within MPMX19_00604 at 617.385 kb on - strand, within MPMX19_00604 at 617.385 kb on - strand, within MPMX19_00604 at 617.561 kb on + strand, within MPMX19_00604 at 617.561 kb on + strand, within MPMX19_00604 at 617.561 kb on + strand, within MPMX19_00604 at 617.561 kb on + strand, within MPMX19_00604 at 617.561 kb on + strand, within MPMX19_00604 at 617.561 kb on + strand, within MPMX19_00604 at 617.561 kb on + strand, within MPMX19_00604 at 617.561 kb on + strand, within MPMX19_00604 at 617.561 kb on + strand, within MPMX19_00604 at 617.562 kb on - strand, within MPMX19_00604 at 617.562 kb on - strand, within MPMX19_00604 at 617.562 kb on - strand, within MPMX19_00604
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 615,276 - +0.9 615,276 - -1.7 615,276 - -0.7 615,276 - +0.1 615,276 - +0.4 615,276 - +0.7 615,276 - +0.2 615,276 - +0.8 615,276 - -1.4 615,312 - MPMX19_00600 0.22 +0.5 615,312 - MPMX19_00600 0.22 -1.8 615,312 - MPMX19_00600 0.22 -0.1 615,312 - MPMX19_00600 0.22 -0.1 615,312 - MPMX19_00600 0.22 -1.7 615,312 - MPMX19_00600 0.22 -1.2 615,312 - MPMX19_00600 0.22 +0.9 615,312 - MPMX19_00600 0.22 -0.6 615,312 - MPMX19_00600 0.22 -0.7 615,312 - MPMX19_00600 0.22 -0.3 615,312 - MPMX19_00600 0.22 +0.1 615,312 - MPMX19_00600 0.22 -0.6 615,312 - MPMX19_00600 0.22 -0.8 615,312 - MPMX19_00600 0.22 -0.8 615,312 - MPMX19_00600 0.22 -1.5 615,312 - MPMX19_00600 0.22 +0.5 615,312 - MPMX19_00600 0.22 -0.8 615,312 - MPMX19_00600 0.22 +0.2 615,312 - MPMX19_00600 0.22 -0.9 615,312 - MPMX19_00600 0.22 -0.3 615,612 - MPMX19_00601 0.29 -0.5 615,612 - MPMX19_00601 0.29 -0.2 615,612 - MPMX19_00601 0.29 +0.5 615,612 - MPMX19_00601 0.29 -0.8 615,612 - MPMX19_00601 0.29 +0.7 615,612 - MPMX19_00601 0.29 +0.5 615,612 - MPMX19_00601 0.29 +1.2 615,612 - MPMX19_00601 0.29 -1.7 615,612 - MPMX19_00601 0.29 +0.5 615,612 - MPMX19_00601 0.29 +0.5 615,612 - MPMX19_00601 0.29 -0.9 615,612 - MPMX19_00601 0.29 +0.1 615,612 - MPMX19_00601 0.29 +0.2 615,616 - MPMX19_00601 0.30 -0.7 615,616 - MPMX19_00601 0.30 -2.0 615,616 - MPMX19_00601 0.30 -0.4 615,616 - MPMX19_00601 0.30 -0.3 615,616 - MPMX19_00601 0.30 -0.3 615,616 - MPMX19_00601 0.30 -1.3 615,616 - MPMX19_00601 0.30 -1.3 615,616 - MPMX19_00601 0.30 -2.1 615,616 - MPMX19_00601 0.30 -0.6 615,616 - MPMX19_00601 0.30 +0.5 615,616 - MPMX19_00601 0.30 -0.9 615,616 - MPMX19_00601 0.30 +0.4 615,616 - MPMX19_00601 0.30 -1.6 615,616 - MPMX19_00601 0.30 -2.1 615,752 - MPMX19_00601 0.82 -2.3 615,752 - MPMX19_00601 0.82 +0.5 615,752 - MPMX19_00601 0.82 -0.7 615,752 - MPMX19_00601 0.82 -0.7 615,752 - MPMX19_00601 0.82 -1.7 615,752 - MPMX19_00601 0.82 -2.2 615,752 - MPMX19_00601 0.82 -0.2 615,752 - MPMX19_00601 0.82 -1.1 615,755 - MPMX19_00601 0.84 -0.8 615,755 - MPMX19_00601 0.84 -2.8 615,755 - MPMX19_00601 0.84 -0.7 615,755 - MPMX19_00601 0.84 -0.6 615,755 - MPMX19_00601 0.84 -1.0 615,755 - MPMX19_00601 0.84 -1.1 615,755 - MPMX19_00601 0.84 -2.2 615,755 - MPMX19_00601 0.84 +1.0 615,755 - MPMX19_00601 0.84 -1.0 615,755 - MPMX19_00601 0.84 -0.4 615,755 - MPMX19_00601 0.84 +0.5 615,755 - MPMX19_00601 0.84 +1.2 615,755 - MPMX19_00601 0.84 -0.7 615,755 - MPMX19_00601 0.84 -0.7 615,755 - MPMX19_00601 0.84 -0.5 615,755 - MPMX19_00601 0.84 +0.5 615,755 - MPMX19_00601 0.84 -0.5 615,755 - MPMX19_00601 0.84 +0.1 615,755 - MPMX19_00601 0.84 +0.3 615,755 - MPMX19_00601 0.84 -0.5 615,755 - MPMX19_00601 0.84 +0.7 615,755 - MPMX19_00601 0.84 -1.1 615,755 - MPMX19_00601 0.84 +0.5 615,755 - MPMX19_00601 0.84 -0.3 615,755 - MPMX19_00601 0.84 -0.8 615,755 - MPMX19_00601 0.84 +0.3 615,762 + MPMX19_00601 0.86 -2.4 615,763 - MPMX19_00601 0.87 +1.1 615,763 - MPMX19_00601 0.87 -0.2 615,763 - MPMX19_00601 0.87 -0.6 615,763 - MPMX19_00601 0.87 +0.2 615,763 - MPMX19_00601 0.87 +0.6 615,763 - MPMX19_00601 0.87 -0.8 615,763 - MPMX19_00601 0.87 -0.7 615,763 - MPMX19_00601 0.87 -1.1 616,652 - +0.8 616,652 - -0.6 616,652 - -0.3 616,652 - +0.1 616,652 - +0.3 616,652 - -0.0 616,652 - -1.5 616,652 - -0.6 616,652 - -2.2 616,652 - -2.4 616,652 - +0.2 616,654 - -0.1 616,654 - -1.2 616,654 - +0.3 616,654 - +0.4 616,654 - +0.5 616,654 - -0.0 616,654 - -1.1 616,654 - -0.3 616,654 - -0.5 616,654 - -0.8 616,654 - +0.8 616,654 - +0.9 616,654 - +0.2 616,654 - +1.3 616,654 - -1.9 616,672 - -0.9 616,672 - -0.4 616,679 + -1.3 616,680 - -0.2 616,680 - -0.7 616,680 - -0.9 616,734 + +0.1 616,734 + -0.1 616,734 + +0.5 616,734 + +0.4 616,734 + -0.5 616,734 + +1.0 616,734 + -0.1 616,735 - -2.8 616,735 - +0.7 616,735 - -1.6 616,735 - +2.5 616,735 - -0.2 617,049 + MPMX19_00603 0.74 -2.3 617,243 + +0.1 617,243 + -0.9 617,243 + +0.2 617,243 + -0.6 617,243 + +0.9 617,243 + +0.7 617,243 + -0.2 617,243 + -1.0 617,243 + +0.4 617,243 + +1.0 617,243 + -0.2 617,243 + -0.7 617,243 + -0.9 617,243 + -2.2 617,243 + -1.5 617,243 + -0.2 617,243 + +0.3 617,243 + +0.3 617,243 + -0.5 617,243 + -1.2 617,243 + -0.7 617,243 + -0.2 617,243 + -1.3 617,243 + +0.9 617,243 + -0.1 617,243 + +0.4 617,243 + +0.7 617,244 - -2.4 617,244 - +0.3 617,244 - -0.1 617,244 - +0.0 617,244 - -1.8 617,244 - +1.0 617,244 - -0.2 617,244 - -0.1 617,244 - +0.4 617,244 - -0.9 617,244 - -1.3 617,244 - +0.2 617,244 - -1.2 617,244 - -1.3 617,244 - -0.7 617,244 - +0.4 617,244 - -0.7 617,384 + MPMX19_00604 0.21 -0.8 617,384 + MPMX19_00604 0.21 +0.5 617,384 + MPMX19_00604 0.21 -1.5 617,384 + MPMX19_00604 0.21 -0.9 617,385 - MPMX19_00604 0.21 -1.1 617,385 - MPMX19_00604 0.21 -1.0 617,385 - MPMX19_00604 0.21 -0.1 617,385 - MPMX19_00604 0.21 +0.2 617,385 - MPMX19_00604 0.21 -0.3 617,385 - MPMX19_00604 0.21 -0.3 617,385 - MPMX19_00604 0.21 -2.2 617,385 - MPMX19_00604 0.21 -1.1 617,385 - MPMX19_00604 0.21 -3.4 617,561 + MPMX19_00604 0.37 -0.1 617,561 + MPMX19_00604 0.37 -0.6 617,561 + MPMX19_00604 0.37 -0.1 617,561 + MPMX19_00604 0.37 +0.3 617,561 + MPMX19_00604 0.37 -0.8 617,561 + MPMX19_00604 0.37 -0.5 617,561 + MPMX19_00604 0.37 +0.1 617,561 + MPMX19_00604 0.37 -0.1 617,561 + MPMX19_00604 0.37 +0.1 617,562 - MPMX19_00604 0.37 -0.6 617,562 - MPMX19_00604 0.37 -0.3 617,562 - MPMX19_00604 0.37 -0.5
Or see this region's nucleotide sequence