Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00120

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00119 and MPMX19_00120 are separated by 38 nucleotidesMPMX19_00120 and MPMX19_00121 overlap by 4 nucleotidesMPMX19_00121 and MPMX19_00122 are separated by 64 nucleotidesMPMX19_00122 and MPMX19_00123 are separated by 55 nucleotides MPMX19_00119: MPMX19_00119 - Arginine biosynthesis bifunctional protein ArgJ, at 131,829 to 133,067 _00119 MPMX19_00120: MPMX19_00120 - hypothetical protein, at 133,106 to 133,690 _00120 MPMX19_00121: MPMX19_00121 - CTP pyrophosphohydrolase, at 133,687 to 134,130 _00121 MPMX19_00122: MPMX19_00122 - hypothetical protein, at 134,195 to 134,506 _00122 MPMX19_00123: MPMX19_00123 - ATP-dependent DNA helicase RecQ, at 134,562 to 136,475 _00123 Position (kb) 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1at 133.065 kb on + strandat 133.065 kb on + strandat 133.065 kb on + strandat 133.066 kb on - strandat 133.066 kb on - strandat 133.066 kb on - strandat 133.066 kb on - strandat 133.066 kb on - strandat 133.256 kb on + strand, within MPMX19_00120at 133.256 kb on + strand, within MPMX19_00120at 133.256 kb on + strand, within MPMX19_00120at 133.256 kb on + strand, within MPMX19_00120at 133.257 kb on - strand, within MPMX19_00120at 133.257 kb on - strand, within MPMX19_00120at 133.257 kb on - strand, within MPMX19_00120at 133.257 kb on - strand, within MPMX19_00120at 133.257 kb on - strand, within MPMX19_00120at 133.436 kb on + strand, within MPMX19_00120at 133.436 kb on + strand, within MPMX19_00120at 133.436 kb on + strand, within MPMX19_00120at 133.436 kb on + strand, within MPMX19_00120at 133.436 kb on + strand, within MPMX19_00120at 133.437 kb on - strand, within MPMX19_00120at 133.437 kb on - strand, within MPMX19_00120at 133.437 kb on - strand, within MPMX19_00120at 133.452 kb on - strand, within MPMX19_00120at 133.960 kb on + strand, within MPMX19_00121at 133.960 kb on + strand, within MPMX19_00121at 133.960 kb on + strand, within MPMX19_00121at 133.960 kb on + strand, within MPMX19_00121at 133.960 kb on + strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 134.053 kb on + strand, within MPMX19_00121at 134.053 kb on + strand, within MPMX19_00121at 134.054 kb on - strand, within MPMX19_00121at 134.128 kb on + strandat 134.128 kb on + strandat 134.128 kb on + strandat 134.129 kb on - strandat 134.129 kb on - strandat 134.129 kb on - strandat 134.129 kb on - strandat 134.129 kb on - strandat 134.129 kb on - strandat 134.129 kb on - strandat 134.170 kb on + strandat 134.170 kb on + strandat 134.171 kb on - strandat 134.172 kb on + strandat 134.173 kb on - strandat 134.173 kb on - strandat 134.173 kb on - strandat 134.229 kb on + strand, within MPMX19_00122at 134.229 kb on + strand, within MPMX19_00122at 134.230 kb on - strand, within MPMX19_00122at 134.230 kb on - strand, within MPMX19_00122at 134.230 kb on - strand, within MPMX19_00122at 134.230 kb on - strand, within MPMX19_00122at 134.383 kb on - strand, within MPMX19_00122at 134.383 kb on - strand, within MPMX19_00122at 134.572 kb on - strandat 134.652 kb on + strandat 134.653 kb on - strandat 134.653 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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133,065 + -0.7
133,065 + -0.2
133,065 + -1.0
133,066 - -0.4
133,066 - -1.0
133,066 - -0.5
133,066 - -0.5
133,066 - +0.6
133,256 + MPMX19_00120 0.26 -2.2
133,256 + MPMX19_00120 0.26 +0.6
133,256 + MPMX19_00120 0.26 +0.8
133,256 + MPMX19_00120 0.26 -3.0
133,257 - MPMX19_00120 0.26 +0.1
133,257 - MPMX19_00120 0.26 -0.2
133,257 - MPMX19_00120 0.26 -2.0
133,257 - MPMX19_00120 0.26 -0.7
133,257 - MPMX19_00120 0.26 +1.7
133,436 + MPMX19_00120 0.56 -1.9
133,436 + MPMX19_00120 0.56 -1.0
133,436 + MPMX19_00120 0.56 -0.4
133,436 + MPMX19_00120 0.56 -1.5
133,436 + MPMX19_00120 0.56 -0.4
133,437 - MPMX19_00120 0.57 -1.4
133,437 - MPMX19_00120 0.57 +1.3
133,437 - MPMX19_00120 0.57 -0.2
133,452 - MPMX19_00120 0.59 -1.6
133,960 + MPMX19_00121 0.61 -0.5
133,960 + MPMX19_00121 0.61 -0.4
133,960 + MPMX19_00121 0.61 -1.0
133,960 + MPMX19_00121 0.61 -0.6
133,960 + MPMX19_00121 0.61 -0.9
133,961 - MPMX19_00121 0.62 -0.7
133,961 - MPMX19_00121 0.62 -0.8
133,961 - MPMX19_00121 0.62 -1.9
133,961 - MPMX19_00121 0.62 +0.9
133,961 - MPMX19_00121 0.62 +1.1
133,961 - MPMX19_00121 0.62 -0.5
133,961 - MPMX19_00121 0.62 -0.3
133,990 + MPMX19_00121 0.68 -1.4
133,990 + MPMX19_00121 0.68 -0.9
133,990 + MPMX19_00121 0.68 -1.0
133,990 + MPMX19_00121 0.68 -0.9
133,990 + MPMX19_00121 0.68 -0.4
133,990 + MPMX19_00121 0.68 -0.1
133,990 + MPMX19_00121 0.68 +0.6
133,990 + MPMX19_00121 0.68 -1.1
133,990 + MPMX19_00121 0.68 +0.4
133,990 + MPMX19_00121 0.68 -2.0
133,990 + MPMX19_00121 0.68 +0.0
133,990 + MPMX19_00121 0.68 -0.6
133,990 + MPMX19_00121 0.68 -0.2
133,990 + MPMX19_00121 0.68 +0.2
133,990 + MPMX19_00121 0.68 -0.1
133,990 + MPMX19_00121 0.68 -1.3
133,990 + MPMX19_00121 0.68 +0.6
133,990 + MPMX19_00121 0.68 +0.3
133,990 + MPMX19_00121 0.68 -1.6
133,990 + MPMX19_00121 0.68 +0.1
133,990 + MPMX19_00121 0.68 -0.3
133,990 + MPMX19_00121 0.68 +0.0
133,990 + MPMX19_00121 0.68 -0.9
133,990 + MPMX19_00121 0.68 -1.0
133,991 - MPMX19_00121 0.68 -1.1
133,991 - MPMX19_00121 0.68 -0.7
133,991 - MPMX19_00121 0.68 -1.0
133,991 - MPMX19_00121 0.68 -0.5
133,991 - MPMX19_00121 0.68 -0.4
133,991 - MPMX19_00121 0.68 +0.2
133,991 - MPMX19_00121 0.68 -2.2
133,991 - MPMX19_00121 0.68 +1.0
133,991 - MPMX19_00121 0.68 +0.4
133,991 - MPMX19_00121 0.68 -1.1
133,991 - MPMX19_00121 0.68 -0.2
133,991 - MPMX19_00121 0.68 -0.7
133,991 - MPMX19_00121 0.68 +0.0
133,991 - MPMX19_00121 0.68 -1.8
133,991 - MPMX19_00121 0.68 +0.1
133,991 - MPMX19_00121 0.68 -1.4
133,991 - MPMX19_00121 0.68 +0.4
133,991 - MPMX19_00121 0.68 +0.0
133,991 - MPMX19_00121 0.68 -0.1
133,991 - MPMX19_00121 0.68 -0.1
133,991 - MPMX19_00121 0.68 -1.2
134,053 + MPMX19_00121 0.82 -0.6
134,053 + MPMX19_00121 0.82 -0.7
134,054 - MPMX19_00121 0.83 -1.0
134,128 + -0.5
134,128 + -0.4
134,128 + +0.3
134,129 - -1.1
134,129 - -0.6
134,129 - +0.0
134,129 - +0.2
134,129 - +1.2
134,129 - -0.1
134,129 - -1.1
134,170 + -0.3
134,170 + +0.5
134,171 - -2.6
134,172 + -1.4
134,173 - +0.6
134,173 - -2.1
134,173 - +0.2
134,229 + MPMX19_00122 0.11 +0.4
134,229 + MPMX19_00122 0.11 -0.4
134,230 - MPMX19_00122 0.11 +0.5
134,230 - MPMX19_00122 0.11 -0.1
134,230 - MPMX19_00122 0.11 -1.2
134,230 - MPMX19_00122 0.11 +0.4
134,383 - MPMX19_00122 0.60 -2.1
134,383 - MPMX19_00122 0.60 +0.6
134,572 - -0.4
134,652 + -0.9
134,653 - +0.6
134,653 - -1.6

Or see this region's nucleotide sequence