Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00024 and MPMX19_00025 are separated by 177 nucleotides MPMX19_00025 and MPMX19_00026 are separated by 252 nucleotides
MPMX19_00024: MPMX19_00024 - 3-dehydro-bile acid delta(4,6)-reductase, at 29,448 to 30,671
_00024
MPMX19_00025: MPMX19_00025 - hypothetical protein, at 30,849 to 31,115
_00025
MPMX19_00026: MPMX19_00026 - hypothetical protein, at 31,368 to 32,336
_00026
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 29.944 kb on + strand, within MPMX19_00024 at 29.944 kb on + strand, within MPMX19_00024 at 29.944 kb on + strand, within MPMX19_00024 at 29.945 kb on - strand, within MPMX19_00024 at 29.945 kb on - strand, within MPMX19_00024 at 29.945 kb on - strand, within MPMX19_00024 at 29.945 kb on - strand, within MPMX19_00024 at 29.945 kb on - strand, within MPMX19_00024 at 29.945 kb on - strand, within MPMX19_00024 at 30.016 kb on - strand, within MPMX19_00024 at 30.481 kb on + strand, within MPMX19_00024 at 30.481 kb on + strand, within MPMX19_00024 at 30.482 kb on - strand, within MPMX19_00024 at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.707 kb on + strand at 30.708 kb on - strand at 30.708 kb on - strand at 30.708 kb on - strand at 30.708 kb on - strand at 30.708 kb on - strand at 30.708 kb on - strand at 30.708 kb on - strand at 30.708 kb on - strand at 30.708 kb on - strand at 30.708 kb on - strand at 30.859 kb on + strand at 30.859 kb on + strand at 30.859 kb on + strand at 30.859 kb on + strand at 30.859 kb on + strand at 30.859 kb on + strand at 30.859 kb on + strand at 30.860 kb on - strand at 30.860 kb on - strand at 30.860 kb on - strand at 30.860 kb on - strand at 30.860 kb on - strand at 30.860 kb on - strand at 30.860 kb on - strand at 30.860 kb on - strand at 30.860 kb on - strand at 30.860 kb on - strand at 30.860 kb on - strand at 30.913 kb on + strand, within MPMX19_00025 at 30.913 kb on + strand, within MPMX19_00025 at 30.914 kb on - strand, within MPMX19_00025 at 30.967 kb on + strand, within MPMX19_00025 at 30.968 kb on - strand, within MPMX19_00025 at 31.262 kb on + strand at 31.262 kb on + strand at 31.262 kb on + strand at 31.262 kb on + strand at 31.262 kb on + strand at 31.262 kb on + strand at 31.262 kb on + strand at 31.262 kb on + strand at 31.262 kb on + strand at 31.262 kb on + strand at 31.262 kb on + strand at 31.262 kb on + strand at 31.262 kb on + strand at 31.263 kb on - strand at 31.263 kb on - strand at 31.263 kb on - strand at 31.263 kb on - strand at 31.263 kb on - strand at 31.263 kb on - strand at 31.263 kb on - strand at 31.263 kb on - strand at 31.263 kb on - strand at 31.405 kb on + strand at 31.405 kb on + strand at 31.405 kb on + strand at 31.405 kb on + strand at 31.405 kb on + strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.406 kb on - strand at 31.438 kb on + strand at 31.438 kb on + strand at 31.438 kb on + strand at 31.438 kb on + strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.439 kb on - strand at 31.645 kb on + strand, within MPMX19_00026 at 31.646 kb on - strand, within MPMX19_00026 at 31.646 kb on - strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.714 kb on + strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.715 kb on - strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.729 kb on + strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.730 kb on - strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.858 kb on + strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026 at 31.859 kb on - strand, within MPMX19_00026
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 29,944 + MPMX19_00024 0.41 -0.2 29,944 + MPMX19_00024 0.41 +0.3 29,944 + MPMX19_00024 0.41 +0.0 29,945 - MPMX19_00024 0.41 -1.5 29,945 - MPMX19_00024 0.41 +0.4 29,945 - MPMX19_00024 0.41 +0.2 29,945 - MPMX19_00024 0.41 +0.4 29,945 - MPMX19_00024 0.41 -0.4 29,945 - MPMX19_00024 0.41 -0.2 30,016 - MPMX19_00024 0.46 -0.3 30,481 + MPMX19_00024 0.84 -2.0 30,481 + MPMX19_00024 0.84 +2.2 30,482 - MPMX19_00024 0.84 +0.4 30,707 + +0.3 30,707 + +0.2 30,707 + +0.7 30,707 + -1.0 30,707 + -2.0 30,707 + -0.0 30,707 + -1.4 30,707 + +0.6 30,707 + +0.2 30,707 + -0.9 30,707 + +0.8 30,707 + -2.3 30,707 + +0.4 30,707 + +0.7 30,707 + +1.2 30,708 - +0.9 30,708 - -1.0 30,708 - -1.1 30,708 - -0.1 30,708 - -1.5 30,708 - -2.5 30,708 - -3.2 30,708 - -0.1 30,708 - -0.2 30,708 - -1.7 30,859 + -1.1 30,859 + +0.1 30,859 + -0.6 30,859 + +0.9 30,859 + +0.3 30,859 + -0.2 30,859 + +0.6 30,860 - -0.2 30,860 - -0.4 30,860 - -0.2 30,860 - -0.2 30,860 - +1.0 30,860 - -2.6 30,860 - -1.5 30,860 - +0.6 30,860 - -0.6 30,860 - +1.9 30,860 - -0.4 30,913 + MPMX19_00025 0.24 +0.0 30,913 + MPMX19_00025 0.24 -0.3 30,914 - MPMX19_00025 0.24 -0.9 30,967 + MPMX19_00025 0.44 -1.0 30,968 - MPMX19_00025 0.45 -1.4 31,262 + +0.3 31,262 + -0.9 31,262 + -0.5 31,262 + -0.0 31,262 + -0.0 31,262 + +0.9 31,262 + +1.0 31,262 + -0.2 31,262 + -0.6 31,262 + +0.3 31,262 + +0.5 31,262 + +0.1 31,262 + -0.4 31,263 - +0.3 31,263 - -0.1 31,263 - +0.9 31,263 - +0.1 31,263 - +0.0 31,263 - +0.1 31,263 - +0.0 31,263 - -0.4 31,263 - -0.1 31,405 + -0.3 31,405 + -0.5 31,405 + -0.3 31,405 + -2.0 31,405 + +0.3 31,406 - -1.3 31,406 - -0.9 31,406 - -0.0 31,406 - -0.3 31,406 - -0.5 31,406 - +0.5 31,438 + -1.9 31,438 + +0.6 31,438 + -0.9 31,438 + +0.4 31,439 - +0.2 31,439 - -0.3 31,439 - -1.7 31,439 - -0.3 31,439 - -0.2 31,439 - +0.1 31,439 - -0.6 31,439 - -0.9 31,439 - +0.5 31,439 - -0.2 31,439 - -0.3 31,645 + MPMX19_00026 0.29 -1.4 31,646 - MPMX19_00026 0.29 +0.2 31,646 - MPMX19_00026 0.29 -0.2 31,714 + MPMX19_00026 0.36 -1.2 31,714 + MPMX19_00026 0.36 -2.0 31,714 + MPMX19_00026 0.36 -1.7 31,714 + MPMX19_00026 0.36 +1.5 31,714 + MPMX19_00026 0.36 +0.4 31,714 + MPMX19_00026 0.36 -2.0 31,714 + MPMX19_00026 0.36 -0.5 31,715 - MPMX19_00026 0.36 +0.4 31,715 - MPMX19_00026 0.36 +0.5 31,715 - MPMX19_00026 0.36 -2.6 31,715 - MPMX19_00026 0.36 +0.3 31,715 - MPMX19_00026 0.36 -1.6 31,715 - MPMX19_00026 0.36 -1.3 31,715 - MPMX19_00026 0.36 +0.2 31,729 + MPMX19_00026 0.37 +0.2 31,729 + MPMX19_00026 0.37 -1.1 31,729 + MPMX19_00026 0.37 +0.3 31,729 + MPMX19_00026 0.37 +0.4 31,729 + MPMX19_00026 0.37 -0.3 31,729 + MPMX19_00026 0.37 +0.8 31,729 + MPMX19_00026 0.37 -1.2 31,729 + MPMX19_00026 0.37 -0.6 31,730 - MPMX19_00026 0.37 +2.2 31,730 - MPMX19_00026 0.37 +0.8 31,730 - MPMX19_00026 0.37 -1.4 31,730 - MPMX19_00026 0.37 -1.9 31,730 - MPMX19_00026 0.37 -1.5 31,730 - MPMX19_00026 0.37 +1.0 31,730 - MPMX19_00026 0.37 +1.6 31,730 - MPMX19_00026 0.37 +0.3 31,858 + MPMX19_00026 0.51 -1.7 31,858 + MPMX19_00026 0.51 -0.2 31,858 + MPMX19_00026 0.51 -1.2 31,858 + MPMX19_00026 0.51 +0.1 31,858 + MPMX19_00026 0.51 +1.4 31,858 + MPMX19_00026 0.51 +0.5 31,858 + MPMX19_00026 0.51 -1.9 31,858 + MPMX19_00026 0.51 -0.5 31,858 + MPMX19_00026 0.51 +0.6 31,858 + MPMX19_00026 0.51 -0.1 31,858 + MPMX19_00026 0.51 +0.5 31,858 + MPMX19_00026 0.51 +0.2 31,859 - MPMX19_00026 0.51 -1.7 31,859 - MPMX19_00026 0.51 -1.1 31,859 - MPMX19_00026 0.51 -1.0 31,859 - MPMX19_00026 0.51 -0.1 31,859 - MPMX19_00026 0.51 +0.4 31,859 - MPMX19_00026 0.51 +0.9 31,859 - MPMX19_00026 0.51 -1.0 31,859 - MPMX19_00026 0.51 -2.0 31,859 - MPMX19_00026 0.51 -0.4
Or see this region's nucleotide sequence