Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF695 and GFF696 are separated by 136 nucleotides GFF696 and GFF697 are separated by 36 nucleotides
GFF695 - D-inositol-3-phosphate glycosyltransferase, at 773,336 to 774,430
GFF695
GFF696 - hypothetical protein, at 774,567 to 775,625
GFF696
GFF697 - Lipid II flippase MurJ, at 775,662 to 777,173
GFF697
Position (kb) 774
775
776 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 774.437 kb on + strand at 774.437 kb on + strand at 774.438 kb on - strand at 774.446 kb on + strand at 774.447 kb on - strand at 774.448 kb on + strand at 774.448 kb on + strand at 774.448 kb on + strand at 774.448 kb on + strand at 774.457 kb on - strand at 774.463 kb on + strand at 774.483 kb on - strand at 774.491 kb on + strand at 774.491 kb on + strand at 774.492 kb on - strand at 774.492 kb on - strand at 774.492 kb on - strand at 774.525 kb on + strand at 774.525 kb on + strand at 774.528 kb on + strand at 774.566 kb on + strand at 774.566 kb on + strand at 774.566 kb on + strand at 774.587 kb on + strand at 774.587 kb on + strand at 774.588 kb on - strand at 774.588 kb on - strand at 774.601 kb on + strand at 774.608 kb on - strand at 774.633 kb on + strand at 774.633 kb on + strand at 774.633 kb on + strand at 774.634 kb on - strand at 774.634 kb on - strand at 774.662 kb on + strand at 774.672 kb on + strand at 774.672 kb on + strand at 774.673 kb on - strand, within GFF696 at 774.749 kb on + strand, within GFF696 at 774.803 kb on - strand, within GFF696 at 774.803 kb on - strand, within GFF696 at 774.823 kb on + strand, within GFF696 at 774.823 kb on + strand, within GFF696 at 774.823 kb on + strand, within GFF696 at 774.824 kb on - strand, within GFF696 at 774.849 kb on - strand, within GFF696 at 774.849 kb on - strand, within GFF696 at 774.849 kb on - strand, within GFF696 at 774.849 kb on - strand, within GFF696 at 774.855 kb on - strand, within GFF696 at 774.881 kb on + strand, within GFF696 at 774.881 kb on + strand, within GFF696 at 774.882 kb on - strand, within GFF696 at 774.882 kb on - strand, within GFF696 at 774.882 kb on - strand, within GFF696 at 774.882 kb on - strand, within GFF696 at 774.888 kb on + strand, within GFF696 at 774.888 kb on + strand, within GFF696 at 774.888 kb on + strand, within GFF696 at 774.888 kb on + strand, within GFF696 at 774.897 kb on + strand, within GFF696 at 774.897 kb on + strand, within GFF696 at 774.898 kb on - strand, within GFF696 at 774.898 kb on - strand, within GFF696 at 774.920 kb on + strand, within GFF696 at 774.920 kb on + strand, within GFF696 at 774.929 kb on + strand, within GFF696 at 774.929 kb on + strand, within GFF696 at 774.929 kb on + strand, within GFF696 at 774.929 kb on + strand, within GFF696 at 774.929 kb on + strand, within GFF696 at 774.930 kb on - strand, within GFF696 at 774.930 kb on - strand, within GFF696 at 774.946 kb on + strand, within GFF696 at 774.947 kb on - strand, within GFF696 at 774.977 kb on + strand, within GFF696 at 774.977 kb on + strand, within GFF696 at 774.978 kb on - strand, within GFF696 at 774.993 kb on + strand, within GFF696 at 774.993 kb on + strand, within GFF696 at 774.993 kb on + strand, within GFF696 at 774.993 kb on + strand, within GFF696 at 774.994 kb on - strand, within GFF696 at 774.994 kb on - strand, within GFF696 at 774.994 kb on - strand, within GFF696 at 775.011 kb on + strand, within GFF696 at 775.012 kb on - strand, within GFF696 at 775.012 kb on - strand, within GFF696 at 775.015 kb on + strand, within GFF696 at 775.016 kb on - strand, within GFF696 at 775.033 kb on - strand, within GFF696 at 775.033 kb on - strand, within GFF696 at 775.035 kb on + strand, within GFF696 at 775.047 kb on - strand, within GFF696 at 775.054 kb on - strand, within GFF696 at 775.057 kb on + strand, within GFF696 at 775.058 kb on - strand, within GFF696 at 775.066 kb on + strand, within GFF696 at 775.079 kb on - strand, within GFF696 at 775.082 kb on + strand, within GFF696 at 775.083 kb on - strand, within GFF696 at 775.083 kb on - strand, within GFF696 at 775.083 kb on - strand, within GFF696 at 775.083 kb on - strand, within GFF696 at 775.085 kb on + strand, within GFF696 at 775.086 kb on - strand, within GFF696 at 775.105 kb on + strand, within GFF696 at 775.106 kb on - strand, within GFF696 at 775.144 kb on + strand, within GFF696 at 775.145 kb on - strand, within GFF696 at 775.151 kb on + strand, within GFF696 at 775.151 kb on + strand, within GFF696 at 775.152 kb on - strand, within GFF696 at 775.162 kb on + strand, within GFF696 at 775.201 kb on + strand, within GFF696 at 775.201 kb on + strand, within GFF696 at 775.207 kb on - strand, within GFF696 at 775.212 kb on + strand, within GFF696 at 775.212 kb on + strand, within GFF696 at 775.212 kb on + strand, within GFF696 at 775.213 kb on - strand, within GFF696 at 775.213 kb on - strand, within GFF696 at 775.213 kb on - strand, within GFF696 at 775.213 kb on - strand, within GFF696 at 775.215 kb on + strand, within GFF696 at 775.215 kb on + strand, within GFF696 at 775.215 kb on + strand, within GFF696 at 775.215 kb on + strand, within GFF696 at 775.215 kb on + strand, within GFF696 at 775.215 kb on + strand, within GFF696 at 775.215 kb on + strand, within GFF696 at 775.215 kb on + strand, within GFF696 at 775.215 kb on + strand, within GFF696 at 775.216 kb on - strand, within GFF696 at 775.216 kb on - strand, within GFF696 at 775.216 kb on - strand, within GFF696 at 775.216 kb on - strand, within GFF696 at 775.224 kb on - strand, within GFF696 at 775.230 kb on - strand, within GFF696 at 775.236 kb on + strand, within GFF696 at 775.236 kb on + strand, within GFF696 at 775.236 kb on + strand, within GFF696 at 775.236 kb on + strand, within GFF696 at 775.237 kb on - strand, within GFF696 at 775.237 kb on - strand, within GFF696 at 775.237 kb on - strand, within GFF696 at 775.237 kb on - strand, within GFF696 at 775.237 kb on - strand, within GFF696 at 775.237 kb on - strand, within GFF696 at 775.237 kb on - strand, within GFF696 at 775.240 kb on + strand, within GFF696 at 775.242 kb on + strand, within GFF696 at 775.242 kb on + strand, within GFF696 at 775.252 kb on + strand, within GFF696 at 775.295 kb on - strand, within GFF696 at 775.301 kb on - strand, within GFF696 at 775.310 kb on + strand, within GFF696 at 775.311 kb on - strand, within GFF696 at 775.333 kb on + strand, within GFF696 at 775.336 kb on + strand, within GFF696 at 775.336 kb on + strand, within GFF696 at 775.393 kb on + strand, within GFF696 at 775.393 kb on + strand, within GFF696 at 775.393 kb on + strand, within GFF696 at 775.394 kb on - strand, within GFF696 at 775.409 kb on + strand, within GFF696 at 775.412 kb on + strand, within GFF696 at 775.413 kb on - strand, within GFF696 at 775.413 kb on - strand, within GFF696 at 775.417 kb on - strand, within GFF696 at 775.423 kb on + strand, within GFF696 at 775.423 kb on + strand, within GFF696 at 775.424 kb on - strand, within GFF696 at 775.426 kb on - strand, within GFF696 at 775.433 kb on - strand, within GFF696 at 775.433 kb on - strand, within GFF696 at 775.462 kb on + strand, within GFF696 at 775.463 kb on - strand, within GFF696 at 775.474 kb on + strand, within GFF696 at 775.477 kb on + strand, within GFF696 at 775.486 kb on - strand, within GFF696 at 775.486 kb on - strand, within GFF696 at 775.508 kb on + strand, within GFF696 at 775.508 kb on + strand, within GFF696 at 775.508 kb on + strand, within GFF696 at 775.509 kb on - strand, within GFF696 at 775.509 kb on - strand, within GFF696 at 775.509 kb on - strand, within GFF696 at 775.532 kb on + strand at 775.532 kb on + strand at 775.532 kb on + strand at 775.542 kb on + strand at 775.542 kb on + strand at 775.542 kb on + strand at 775.543 kb on - strand at 775.553 kb on + strand at 775.553 kb on + strand at 775.554 kb on - strand at 775.557 kb on + strand at 775.611 kb on + strand at 775.611 kb on + strand at 775.611 kb on + strand at 775.611 kb on + strand at 775.611 kb on + strand at 775.611 kb on + strand at 775.612 kb on - strand at 775.615 kb on + strand at 775.615 kb on + strand at 775.624 kb on - strand at 775.628 kb on + strand at 775.638 kb on + strand at 775.638 kb on + strand at 775.638 kb on + strand at 775.638 kb on + strand at 775.638 kb on + strand at 775.638 kb on + strand at 775.639 kb on - strand at 775.642 kb on + strand at 775.642 kb on + strand at 775.642 kb on + strand at 775.642 kb on + strand at 775.642 kb on + strand at 775.642 kb on + strand at 775.642 kb on + strand at 775.643 kb on - strand at 775.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x remove 774,437 + +0.1 774,437 + +0.1 774,438 - +0.1 774,446 + -0.3 774,447 - -1.3 774,448 + -1.5 774,448 + -0.7 774,448 + -0.7 774,448 + -0.3 774,457 - -0.1 774,463 + -0.5 774,483 - +0.2 774,491 + -1.1 774,491 + -0.6 774,492 - +0.9 774,492 - -0.4 774,492 - -0.5 774,525 + -0.7 774,525 + -0.4 774,528 + -0.0 774,566 + -1.1 774,566 + -0.7 774,566 + -0.5 774,587 + -0.7 774,587 + -0.8 774,588 - -2.3 774,588 - -0.9 774,601 + +0.3 774,608 - +0.5 774,633 + +0.0 774,633 + -0.1 774,633 + +0.1 774,634 - -1.4 774,634 - -0.9 774,662 + -1.1 774,672 + -2.3 774,672 + -0.1 774,673 - GFF696 0.10 -0.3 774,749 + GFF696 0.17 -0.1 774,803 - GFF696 0.22 +0.5 774,803 - GFF696 0.22 +0.1 774,823 + GFF696 0.24 +0.1 774,823 + GFF696 0.24 -1.6 774,823 + GFF696 0.24 +0.3 774,824 - GFF696 0.24 +0.5 774,849 - GFF696 0.27 +0.2 774,849 - GFF696 0.27 -0.5 774,849 - GFF696 0.27 -0.5 774,849 - GFF696 0.27 -1.4 774,855 - GFF696 0.27 -0.7 774,881 + GFF696 0.30 -0.8 774,881 + GFF696 0.30 -1.1 774,882 - GFF696 0.30 -1.0 774,882 - GFF696 0.30 -0.6 774,882 - GFF696 0.30 -0.9 774,882 - GFF696 0.30 -0.9 774,888 + GFF696 0.30 -0.4 774,888 + GFF696 0.30 -2.1 774,888 + GFF696 0.30 +0.5 774,888 + GFF696 0.30 +0.6 774,897 + GFF696 0.31 -0.6 774,897 + GFF696 0.31 -1.1 774,898 - GFF696 0.31 -0.7 774,898 - GFF696 0.31 +0.2 774,920 + GFF696 0.33 -1.1 774,920 + GFF696 0.33 +0.2 774,929 + GFF696 0.34 -1.5 774,929 + GFF696 0.34 -0.6 774,929 + GFF696 0.34 -0.8 774,929 + GFF696 0.34 -1.3 774,929 + GFF696 0.34 +0.9 774,930 - GFF696 0.34 -1.1 774,930 - GFF696 0.34 +0.3 774,946 + GFF696 0.36 -1.0 774,947 - GFF696 0.36 -0.4 774,977 + GFF696 0.39 -0.9 774,977 + GFF696 0.39 +0.8 774,978 - GFF696 0.39 -0.7 774,993 + GFF696 0.40 +0.1 774,993 + GFF696 0.40 +0.6 774,993 + GFF696 0.40 -0.1 774,993 + GFF696 0.40 -0.6 774,994 - GFF696 0.40 +0.9 774,994 - GFF696 0.40 -0.1 774,994 - GFF696 0.40 +0.7 775,011 + GFF696 0.42 +0.2 775,012 - GFF696 0.42 -0.5 775,012 - GFF696 0.42 +0.3 775,015 + GFF696 0.42 -0.1 775,016 - GFF696 0.42 -1.1 775,033 - GFF696 0.44 +0.5 775,033 - GFF696 0.44 -0.9 775,035 + GFF696 0.44 +0.3 775,047 - GFF696 0.45 -1.1 775,054 - GFF696 0.46 -0.1 775,057 + GFF696 0.46 +0.7 775,058 - GFF696 0.46 -1.4 775,066 + GFF696 0.47 -0.4 775,079 - GFF696 0.48 -0.3 775,082 + GFF696 0.49 +0.7 775,083 - GFF696 0.49 -1.1 775,083 - GFF696 0.49 +0.4 775,083 - GFF696 0.49 +0.1 775,083 - GFF696 0.49 -0.1 775,085 + GFF696 0.49 -0.7 775,086 - GFF696 0.49 -0.4 775,105 + GFF696 0.51 -0.7 775,106 - GFF696 0.51 +0.0 775,144 + GFF696 0.54 +0.2 775,145 - GFF696 0.55 -1.7 775,151 + GFF696 0.55 -0.4 775,151 + GFF696 0.55 -0.4 775,152 - GFF696 0.55 +0.6 775,162 + GFF696 0.56 -1.3 775,201 + GFF696 0.60 -0.3 775,201 + GFF696 0.60 +0.9 775,207 - GFF696 0.60 +0.5 775,212 + GFF696 0.61 -0.9 775,212 + GFF696 0.61 +0.5 775,212 + GFF696 0.61 -0.7 775,213 - GFF696 0.61 -1.5 775,213 - GFF696 0.61 -0.3 775,213 - GFF696 0.61 +0.1 775,213 - GFF696 0.61 -0.9 775,215 + GFF696 0.61 -1.1 775,215 + GFF696 0.61 -0.1 775,215 + GFF696 0.61 -1.0 775,215 + GFF696 0.61 -0.4 775,215 + GFF696 0.61 +0.2 775,215 + GFF696 0.61 -0.3 775,215 + GFF696 0.61 -0.3 775,215 + GFF696 0.61 -1.1 775,215 + GFF696 0.61 -0.8 775,216 - GFF696 0.61 -0.5 775,216 - GFF696 0.61 +0.0 775,216 - GFF696 0.61 +0.7 775,216 - GFF696 0.61 -0.2 775,224 - GFF696 0.62 -2.8 775,230 - GFF696 0.63 +0.0 775,236 + GFF696 0.63 -0.8 775,236 + GFF696 0.63 +0.6 775,236 + GFF696 0.63 -0.7 775,236 + GFF696 0.63 -0.4 775,237 - GFF696 0.63 -0.7 775,237 - GFF696 0.63 -0.1 775,237 - GFF696 0.63 -1.1 775,237 - GFF696 0.63 -1.1 775,237 - GFF696 0.63 -0.2 775,237 - GFF696 0.63 -0.7 775,237 - GFF696 0.63 -0.4 775,240 + GFF696 0.64 -1.9 775,242 + GFF696 0.64 -1.0 775,242 + GFF696 0.64 -1.1 775,252 + GFF696 0.65 -0.7 775,295 - GFF696 0.69 +0.7 775,301 - GFF696 0.69 -0.2 775,310 + GFF696 0.70 -0.1 775,311 - GFF696 0.70 -0.1 775,333 + GFF696 0.72 +0.6 775,336 + GFF696 0.73 -1.2 775,336 + GFF696 0.73 -0.7 775,393 + GFF696 0.78 -2.1 775,393 + GFF696 0.78 -0.2 775,393 + GFF696 0.78 +0.9 775,394 - GFF696 0.78 -0.5 775,409 + GFF696 0.80 -0.9 775,412 + GFF696 0.80 -0.5 775,413 - GFF696 0.80 +0.1 775,413 - GFF696 0.80 -0.3 775,417 - GFF696 0.80 +0.3 775,423 + GFF696 0.81 -0.3 775,423 + GFF696 0.81 -0.3 775,424 - GFF696 0.81 -0.3 775,426 - GFF696 0.81 -0.4 775,433 - GFF696 0.82 -2.7 775,433 - GFF696 0.82 +0.2 775,462 + GFF696 0.85 -0.7 775,463 - GFF696 0.85 +0.9 775,474 + GFF696 0.86 -1.3 775,477 + GFF696 0.86 -0.6 775,486 - GFF696 0.87 +0.9 775,486 - GFF696 0.87 -0.3 775,508 + GFF696 0.89 +0.3 775,508 + GFF696 0.89 -0.3 775,508 + GFF696 0.89 -0.8 775,509 - GFF696 0.89 +0.5 775,509 - GFF696 0.89 +0.3 775,509 - GFF696 0.89 +0.5 775,532 + -0.8 775,532 + -2.3 775,532 + +0.1 775,542 + -1.4 775,542 + -1.7 775,542 + +0.0 775,543 - -0.1 775,553 + -2.4 775,553 + -1.7 775,554 - -0.4 775,557 + -1.9 775,611 + +0.5 775,611 + -0.9 775,611 + -2.1 775,611 + -1.5 775,611 + -1.1 775,611 + +0.6 775,612 - -1.4 775,615 + -0.1 775,615 + -0.1 775,624 - -1.5 775,628 + -0.2 775,638 + -0.8 775,638 + -0.4 775,638 + +0.3 775,638 + -0.7 775,638 + +0.4 775,638 + -1.4 775,639 - -0.4 775,642 + -1.3 775,642 + +0.7 775,642 + -0.9 775,642 + -0.1 775,642 + -2.5 775,642 + -1.2 775,642 + -1.9 775,643 - -1.4 775,643 - -1.7
Or see this region's nucleotide sequence