Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF617 and GFF618 overlap by 1 nucleotides GFF618 and GFF619 are separated by 139 nucleotides GFF619 and GFF620 are separated by 93 nucleotides
GFF617 - hypothetical protein, at 683,671 to 684,219
GFF617
GFF618 - hypothetical protein, at 684,219 to 684,764
GFF618
GFF619 - hypothetical protein, at 684,904 to 687,027
GFF619
GFF620 - Exoribonuclease 2, at 687,121 to 689,022
GFF620
Position (kb) 684
685
686
687
688 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 683.911 kb on - strand, within GFF617 at 683.911 kb on - strand, within GFF617 at 683.946 kb on - strand, within GFF617 at 683.946 kb on - strand, within GFF617 at 683.946 kb on - strand, within GFF617 at 683.966 kb on + strand, within GFF617 at 683.966 kb on + strand, within GFF617 at 683.967 kb on - strand, within GFF617 at 683.978 kb on + strand, within GFF617 at 683.978 kb on + strand, within GFF617 at 684.010 kb on + strand, within GFF617 at 684.010 kb on + strand, within GFF617 at 684.010 kb on + strand, within GFF617 at 684.010 kb on + strand, within GFF617 at 684.011 kb on - strand, within GFF617 at 684.011 kb on - strand, within GFF617 at 684.011 kb on - strand, within GFF617 at 684.011 kb on - strand, within GFF617 at 684.044 kb on + strand, within GFF617 at 684.044 kb on + strand, within GFF617 at 684.044 kb on + strand, within GFF617 at 684.045 kb on - strand, within GFF617 at 684.068 kb on + strand, within GFF617 at 684.068 kb on + strand, within GFF617 at 684.068 kb on + strand, within GFF617 at 684.069 kb on - strand, within GFF617 at 684.069 kb on - strand, within GFF617 at 684.069 kb on - strand, within GFF617 at 684.069 kb on - strand, within GFF617 at 684.093 kb on + strand, within GFF617 at 684.093 kb on + strand, within GFF617 at 684.125 kb on + strand, within GFF617 at 684.126 kb on - strand, within GFF617 at 684.147 kb on - strand, within GFF617 at 684.147 kb on - strand, within GFF617 at 684.151 kb on + strand, within GFF617 at 684.231 kb on + strand at 684.231 kb on + strand at 684.231 kb on + strand at 684.278 kb on + strand, within GFF618 at 684.365 kb on - strand, within GFF618 at 684.468 kb on - strand, within GFF618 at 684.540 kb on - strand, within GFF618 at 684.545 kb on + strand, within GFF618 at 684.546 kb on - strand, within GFF618 at 684.578 kb on - strand, within GFF618 at 684.578 kb on - strand, within GFF618 at 684.581 kb on + strand, within GFF618 at 684.581 kb on + strand, within GFF618 at 684.582 kb on - strand, within GFF618 at 684.582 kb on - strand, within GFF618 at 684.654 kb on + strand, within GFF618 at 684.697 kb on + strand, within GFF618 at 684.697 kb on + strand, within GFF618 at 684.698 kb on - strand, within GFF618 at 684.698 kb on - strand, within GFF618 at 684.698 kb on - strand, within GFF618 at 684.698 kb on - strand, within GFF618 at 684.722 kb on - strand at 684.762 kb on + strand at 684.763 kb on - strand at 684.763 kb on - strand at 684.776 kb on + strand at 684.850 kb on + strand at 684.850 kb on + strand at 684.861 kb on + strand at 684.870 kb on + strand at 684.871 kb on - strand at 684.871 kb on - strand at 684.876 kb on - strand at 684.889 kb on + strand at 684.890 kb on - strand at 684.896 kb on - strand at 684.914 kb on + strand at 684.915 kb on - strand at 684.922 kb on + strand at 684.922 kb on + strand at 684.923 kb on - strand at 684.923 kb on - strand at 684.942 kb on + strand at 684.943 kb on - strand at 684.943 kb on - strand at 684.991 kb on - strand at 685.013 kb on + strand at 685.014 kb on - strand at 685.014 kb on - strand at 685.014 kb on - strand at 685.014 kb on - strand at 685.024 kb on + strand at 685.024 kb on + strand at 685.024 kb on + strand at 685.024 kb on + strand at 685.025 kb on - strand at 685.025 kb on - strand at 685.025 kb on - strand at 685.045 kb on - strand at 685.123 kb on + strand, within GFF619 at 685.123 kb on + strand, within GFF619 at 685.124 kb on - strand, within GFF619 at 685.124 kb on - strand, within GFF619 at 685.124 kb on - strand, within GFF619 at 685.124 kb on - strand, within GFF619 at 685.134 kb on + strand, within GFF619 at 685.134 kb on + strand, within GFF619 at 685.135 kb on - strand, within GFF619 at 685.135 kb on - strand, within GFF619 at 685.189 kb on + strand, within GFF619 at 685.190 kb on - strand, within GFF619 at 685.195 kb on + strand, within GFF619 at 685.195 kb on + strand, within GFF619 at 685.195 kb on + strand, within GFF619 at 685.195 kb on + strand, within GFF619 at 685.196 kb on + strand, within GFF619 at 685.196 kb on - strand, within GFF619 at 685.196 kb on - strand, within GFF619 at 685.196 kb on - strand, within GFF619 at 685.196 kb on - strand, within GFF619 at 685.196 kb on - strand, within GFF619 at 685.196 kb on - strand, within GFF619 at 685.211 kb on + strand, within GFF619 at 685.212 kb on - strand, within GFF619 at 685.276 kb on + strand, within GFF619 at 685.276 kb on + strand, within GFF619 at 685.277 kb on - strand, within GFF619 at 685.277 kb on - strand, within GFF619 at 685.277 kb on - strand, within GFF619 at 685.277 kb on - strand, within GFF619 at 685.277 kb on - strand, within GFF619 at 685.302 kb on - strand, within GFF619 at 685.302 kb on - strand, within GFF619 at 685.354 kb on + strand, within GFF619 at 685.354 kb on + strand, within GFF619 at 685.354 kb on + strand, within GFF619 at 685.355 kb on - strand, within GFF619 at 685.355 kb on - strand, within GFF619 at 685.428 kb on + strand, within GFF619 at 685.428 kb on + strand, within GFF619 at 685.428 kb on + strand, within GFF619 at 685.428 kb on + strand, within GFF619 at 685.429 kb on - strand, within GFF619 at 685.429 kb on - strand, within GFF619 at 685.429 kb on - strand, within GFF619 at 685.521 kb on + strand, within GFF619 at 685.521 kb on + strand, within GFF619 at 685.521 kb on + strand, within GFF619 at 685.522 kb on - strand, within GFF619 at 685.522 kb on - strand, within GFF619 at 685.522 kb on - strand, within GFF619 at 685.522 kb on - strand, within GFF619 at 685.590 kb on + strand, within GFF619 at 685.590 kb on + strand, within GFF619 at 685.591 kb on - strand, within GFF619 at 685.608 kb on + strand, within GFF619 at 685.608 kb on + strand, within GFF619 at 685.608 kb on + strand, within GFF619 at 685.609 kb on - strand, within GFF619 at 685.609 kb on - strand, within GFF619 at 685.623 kb on - strand, within GFF619 at 685.660 kb on + strand, within GFF619 at 685.660 kb on + strand, within GFF619 at 685.660 kb on + strand, within GFF619 at 685.660 kb on + strand, within GFF619 at 685.661 kb on - strand, within GFF619 at 685.661 kb on - strand, within GFF619 at 685.661 kb on - strand, within GFF619 at 685.661 kb on - strand, within GFF619 at 685.661 kb on - strand, within GFF619 at 685.661 kb on - strand, within GFF619 at 685.661 kb on - strand, within GFF619 at 685.677 kb on + strand, within GFF619 at 685.678 kb on - strand, within GFF619 at 685.725 kb on + strand, within GFF619 at 685.725 kb on + strand, within GFF619 at 685.726 kb on - strand, within GFF619 at 685.734 kb on + strand, within GFF619 at 685.735 kb on - strand, within GFF619 at 685.746 kb on - strand, within GFF619 at 685.770 kb on + strand, within GFF619 at 685.861 kb on + strand, within GFF619 at 685.862 kb on - strand, within GFF619 at 685.862 kb on - strand, within GFF619 at 685.869 kb on + strand, within GFF619 at 685.869 kb on + strand, within GFF619 at 685.869 kb on + strand, within GFF619 at 685.869 kb on + strand, within GFF619 at 685.890 kb on + strand, within GFF619 at 685.891 kb on - strand, within GFF619 at 685.891 kb on - strand, within GFF619 at 685.891 kb on - strand, within GFF619 at 685.893 kb on + strand, within GFF619 at 685.893 kb on + strand, within GFF619 at 685.893 kb on + strand, within GFF619 at 685.893 kb on + strand, within GFF619 at 685.894 kb on - strand, within GFF619 at 685.894 kb on - strand, within GFF619 at 685.894 kb on - strand, within GFF619 at 685.894 kb on - strand, within GFF619 at 685.894 kb on - strand, within GFF619 at 685.894 kb on - strand, within GFF619 at 685.894 kb on - strand, within GFF619 at 685.894 kb on - strand, within GFF619 at 685.954 kb on + strand, within GFF619 at 685.954 kb on + strand, within GFF619 at 685.958 kb on + strand, within GFF619 at 685.983 kb on - strand, within GFF619 at 685.983 kb on - strand, within GFF619 at 686.074 kb on - strand, within GFF619 at 686.140 kb on - strand, within GFF619 at 686.162 kb on + strand, within GFF619 at 686.162 kb on + strand, within GFF619 at 686.169 kb on - strand, within GFF619 at 686.351 kb on + strand, within GFF619 at 686.351 kb on + strand, within GFF619 at 686.351 kb on + strand, within GFF619 at 686.351 kb on + strand, within GFF619 at 686.352 kb on - strand, within GFF619 at 686.352 kb on - strand, within GFF619 at 686.352 kb on - strand, within GFF619 at 686.398 kb on + strand, within GFF619 at 686.398 kb on + strand, within GFF619 at 686.398 kb on + strand, within GFF619 at 686.484 kb on + strand, within GFF619 at 686.533 kb on + strand, within GFF619 at 686.533 kb on + strand, within GFF619 at 686.534 kb on - strand, within GFF619 at 686.534 kb on - strand, within GFF619 at 686.534 kb on - strand, within GFF619 at 686.632 kb on + strand, within GFF619 at 686.632 kb on + strand, within GFF619 at 686.632 kb on + strand, within GFF619 at 686.633 kb on - strand, within GFF619 at 686.633 kb on - strand, within GFF619 at 686.633 kb on - strand, within GFF619 at 686.633 kb on - strand, within GFF619 at 686.639 kb on + strand, within GFF619 at 686.685 kb on - strand, within GFF619 at 686.802 kb on + strand, within GFF619 at 686.803 kb on - strand, within GFF619 at 686.807 kb on + strand, within GFF619 at 686.807 kb on + strand, within GFF619 at 686.807 kb on + strand, within GFF619 at 686.807 kb on + strand, within GFF619 at 686.808 kb on - strand, within GFF619 at 686.808 kb on - strand, within GFF619 at 686.808 kb on - strand, within GFF619 at 686.808 kb on - strand, within GFF619 at 686.808 kb on - strand, within GFF619 at 686.985 kb on + strand at 686.985 kb on + strand at 686.985 kb on + strand at 686.985 kb on + strand at 686.985 kb on + strand at 686.985 kb on + strand at 686.986 kb on - strand at 686.986 kb on - strand at 686.986 kb on - strand at 686.986 kb on - strand at 686.986 kb on - strand at 686.986 kb on - strand at 686.986 kb on - strand at 687.087 kb on + strand at 687.087 kb on + strand at 687.088 kb on - strand at 687.088 kb on - strand at 687.094 kb on - strand at 687.101 kb on + strand at 687.101 kb on + strand at 687.154 kb on - strand at 687.376 kb on + strand, within GFF620 at 687.376 kb on + strand, within GFF620 at 687.379 kb on + strand, within GFF620 at 687.380 kb on - strand, within GFF620 at 687.446 kb on - strand, within GFF620 at 687.739 kb on + strand, within GFF620 at 687.852 kb on + strand, within GFF620 at 687.852 kb on + strand, within GFF620 at 688.006 kb on - strand, within GFF620 at 688.012 kb on + strand, within GFF620 at 688.012 kb on + strand, within GFF620
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x remove 683,911 - GFF617 0.44 -1.6 683,911 - GFF617 0.44 -0.7 683,946 - GFF617 0.50 -0.4 683,946 - GFF617 0.50 -0.5 683,946 - GFF617 0.50 -0.7 683,966 + GFF617 0.54 -1.1 683,966 + GFF617 0.54 +0.3 683,967 - GFF617 0.54 -0.6 683,978 + GFF617 0.56 -0.1 683,978 + GFF617 0.56 -1.0 684,010 + GFF617 0.62 +0.5 684,010 + GFF617 0.62 -0.8 684,010 + GFF617 0.62 +0.6 684,010 + GFF617 0.62 -0.3 684,011 - GFF617 0.62 -0.3 684,011 - GFF617 0.62 -0.7 684,011 - GFF617 0.62 -0.4 684,011 - GFF617 0.62 -1.1 684,044 + GFF617 0.68 -0.1 684,044 + GFF617 0.68 -0.2 684,044 + GFF617 0.68 -0.4 684,045 - GFF617 0.68 -0.2 684,068 + GFF617 0.72 -1.6 684,068 + GFF617 0.72 -0.1 684,068 + GFF617 0.72 -1.4 684,069 - GFF617 0.72 -0.4 684,069 - GFF617 0.72 -1.4 684,069 - GFF617 0.72 +0.7 684,069 - GFF617 0.72 -1.3 684,093 + GFF617 0.77 -1.1 684,093 + GFF617 0.77 -0.2 684,125 + GFF617 0.83 -1.5 684,126 - GFF617 0.83 +0.0 684,147 - GFF617 0.87 -0.4 684,147 - GFF617 0.87 -0.3 684,151 + GFF617 0.87 +0.5 684,231 + +0.5 684,231 + -0.6 684,231 + -3.9 684,278 + GFF618 0.11 -0.8 684,365 - GFF618 0.27 -0.4 684,468 - GFF618 0.46 -1.7 684,540 - GFF618 0.59 -0.3 684,545 + GFF618 0.60 +0.2 684,546 - GFF618 0.60 -0.3 684,578 - GFF618 0.66 -0.9 684,578 - GFF618 0.66 -0.3 684,581 + GFF618 0.66 +0.3 684,581 + GFF618 0.66 +0.5 684,582 - GFF618 0.66 -1.7 684,582 - GFF618 0.66 +1.4 684,654 + GFF618 0.80 -1.6 684,697 + GFF618 0.88 -0.1 684,697 + GFF618 0.88 -0.3 684,698 - GFF618 0.88 -0.4 684,698 - GFF618 0.88 +0.5 684,698 - GFF618 0.88 -1.1 684,698 - GFF618 0.88 -0.1 684,722 - -0.8 684,762 + -0.7 684,763 - -0.8 684,763 - +0.5 684,776 + -0.1 684,850 + -0.3 684,850 + -0.4 684,861 + -0.3 684,870 + -1.3 684,871 - -1.5 684,871 - -0.4 684,876 - -1.1 684,889 + -0.5 684,890 - -1.4 684,896 - -1.0 684,914 + +0.6 684,915 - -1.1 684,922 + -1.5 684,922 + -1.1 684,923 - +0.7 684,923 - -0.8 684,942 + -1.1 684,943 - +0.6 684,943 - -0.3 684,991 - -1.1 685,013 + -0.6 685,014 - -0.5 685,014 - -1.1 685,014 - +0.9 685,014 - -1.2 685,024 + -2.9 685,024 + +0.3 685,024 + -0.4 685,024 + -1.4 685,025 - -0.3 685,025 - -0.5 685,025 - -0.1 685,045 - -0.7 685,123 + GFF619 0.10 -1.2 685,123 + GFF619 0.10 -0.7 685,124 - GFF619 0.10 -1.1 685,124 - GFF619 0.10 -0.1 685,124 - GFF619 0.10 -2.0 685,124 - GFF619 0.10 -1.7 685,134 + GFF619 0.11 +1.1 685,134 + GFF619 0.11 +0.9 685,135 - GFF619 0.11 -0.1 685,135 - GFF619 0.11 -0.5 685,189 + GFF619 0.13 -0.2 685,190 - GFF619 0.13 -1.4 685,195 + GFF619 0.14 -0.4 685,195 + GFF619 0.14 -1.1 685,195 + GFF619 0.14 -0.6 685,195 + GFF619 0.14 -0.1 685,196 + GFF619 0.14 -1.3 685,196 - GFF619 0.14 -0.4 685,196 - GFF619 0.14 -0.2 685,196 - GFF619 0.14 +0.3 685,196 - GFF619 0.14 +0.2 685,196 - GFF619 0.14 -0.1 685,196 - GFF619 0.14 -0.7 685,211 + GFF619 0.14 -0.1 685,212 - GFF619 0.15 -0.4 685,276 + GFF619 0.18 -0.3 685,276 + GFF619 0.18 -1.8 685,277 - GFF619 0.18 -0.7 685,277 - GFF619 0.18 -1.5 685,277 - GFF619 0.18 +0.2 685,277 - GFF619 0.18 -0.1 685,277 - GFF619 0.18 -0.2 685,302 - GFF619 0.19 +1.3 685,302 - GFF619 0.19 -0.5 685,354 + GFF619 0.21 +0.3 685,354 + GFF619 0.21 -2.1 685,354 + GFF619 0.21 -1.2 685,355 - GFF619 0.21 -0.3 685,355 - GFF619 0.21 -0.8 685,428 + GFF619 0.25 -0.6 685,428 + GFF619 0.25 -0.7 685,428 + GFF619 0.25 -0.4 685,428 + GFF619 0.25 -0.2 685,429 - GFF619 0.25 -2.4 685,429 - GFF619 0.25 -0.3 685,429 - GFF619 0.25 -0.1 685,521 + GFF619 0.29 -0.1 685,521 + GFF619 0.29 -0.5 685,521 + GFF619 0.29 +0.5 685,522 - GFF619 0.29 +0.3 685,522 - GFF619 0.29 +0.2 685,522 - GFF619 0.29 +0.2 685,522 - GFF619 0.29 -0.9 685,590 + GFF619 0.32 -1.9 685,590 + GFF619 0.32 -0.7 685,591 - GFF619 0.32 -0.6 685,608 + GFF619 0.33 -0.3 685,608 + GFF619 0.33 -1.9 685,608 + GFF619 0.33 -0.4 685,609 - GFF619 0.33 -1.4 685,609 - GFF619 0.33 -0.7 685,623 - GFF619 0.34 -1.4 685,660 + GFF619 0.36 -0.4 685,660 + GFF619 0.36 -0.2 685,660 + GFF619 0.36 +0.5 685,660 + GFF619 0.36 +0.5 685,661 - GFF619 0.36 +0.9 685,661 - GFF619 0.36 -1.4 685,661 - GFF619 0.36 -0.3 685,661 - GFF619 0.36 -0.1 685,661 - GFF619 0.36 -0.6 685,661 - GFF619 0.36 -1.1 685,661 - GFF619 0.36 -1.1 685,677 + GFF619 0.36 -2.1 685,678 - GFF619 0.36 -0.5 685,725 + GFF619 0.39 -1.4 685,725 + GFF619 0.39 +0.5 685,726 - GFF619 0.39 -0.1 685,734 + GFF619 0.39 -1.3 685,735 - GFF619 0.39 -1.0 685,746 - GFF619 0.40 -2.3 685,770 + GFF619 0.41 -0.8 685,861 + GFF619 0.45 -0.6 685,862 - GFF619 0.45 -1.4 685,862 - GFF619 0.45 +0.9 685,869 + GFF619 0.45 -1.0 685,869 + GFF619 0.45 -1.7 685,869 + GFF619 0.45 +0.4 685,869 + GFF619 0.45 +0.2 685,890 + GFF619 0.46 -0.3 685,891 - GFF619 0.46 -1.1 685,891 - GFF619 0.46 -1.7 685,891 - GFF619 0.46 +0.5 685,893 + GFF619 0.47 -1.4 685,893 + GFF619 0.47 -0.4 685,893 + GFF619 0.47 -1.9 685,893 + GFF619 0.47 +0.7 685,894 - GFF619 0.47 -0.4 685,894 - GFF619 0.47 -0.5 685,894 - GFF619 0.47 -1.7 685,894 - GFF619 0.47 +0.4 685,894 - GFF619 0.47 -2.1 685,894 - GFF619 0.47 -0.4 685,894 - GFF619 0.47 -1.7 685,894 - GFF619 0.47 +0.1 685,954 + GFF619 0.49 -0.4 685,954 + GFF619 0.49 -1.1 685,958 + GFF619 0.50 -0.7 685,983 - GFF619 0.51 -0.6 685,983 - GFF619 0.51 -0.1 686,074 - GFF619 0.55 -0.3 686,140 - GFF619 0.58 -1.1 686,162 + GFF619 0.59 +0.3 686,162 + GFF619 0.59 -1.0 686,169 - GFF619 0.60 -1.4 686,351 + GFF619 0.68 -1.4 686,351 + GFF619 0.68 -0.6 686,351 + GFF619 0.68 -1.4 686,351 + GFF619 0.68 -1.5 686,352 - GFF619 0.68 +0.6 686,352 - GFF619 0.68 -0.3 686,352 - GFF619 0.68 -0.1 686,398 + GFF619 0.70 -0.1 686,398 + GFF619 0.70 +0.2 686,398 + GFF619 0.70 -0.1 686,484 + GFF619 0.74 +0.2 686,533 + GFF619 0.77 -1.1 686,533 + GFF619 0.77 -0.4 686,534 - GFF619 0.77 +0.5 686,534 - GFF619 0.77 -0.7 686,534 - GFF619 0.77 +0.1 686,632 + GFF619 0.81 -0.3 686,632 + GFF619 0.81 +0.6 686,632 + GFF619 0.81 -0.1 686,633 - GFF619 0.81 -0.1 686,633 - GFF619 0.81 -1.3 686,633 - GFF619 0.81 -1.2 686,633 - GFF619 0.81 -0.3 686,639 + GFF619 0.82 -0.1 686,685 - GFF619 0.84 +0.2 686,802 + GFF619 0.89 -1.1 686,803 - GFF619 0.89 -0.5 686,807 + GFF619 0.90 -0.7 686,807 + GFF619 0.90 -1.4 686,807 + GFF619 0.90 -1.1 686,807 + GFF619 0.90 -0.7 686,808 - GFF619 0.90 -0.3 686,808 - GFF619 0.90 +1.5 686,808 - GFF619 0.90 -1.1 686,808 - GFF619 0.90 -2.4 686,808 - GFF619 0.90 +1.2 686,985 + -2.1 686,985 + -2.0 686,985 + -2.0 686,985 + -0.1 686,985 + -0.7 686,985 + -1.7 686,986 - -1.7 686,986 - -1.4 686,986 - -1.1 686,986 - +0.9 686,986 - +0.2 686,986 - -0.6 686,986 - -1.4 687,087 + -1.3 687,087 + +0.5 687,088 - -0.4 687,088 - -0.5 687,094 - +0.6 687,101 + -1.9 687,101 + -0.6 687,154 - -1.1 687,376 + GFF620 0.13 -0.1 687,376 + GFF620 0.13 -0.9 687,379 + GFF620 0.14 +0.6 687,380 - GFF620 0.14 -1.3 687,446 - GFF620 0.17 -1.7 687,739 + GFF620 0.32 -1.9 687,852 + GFF620 0.38 -0.7 687,852 + GFF620 0.38 -1.1 688,006 - GFF620 0.47 -1.7 688,012 + GFF620 0.47 -1.3 688,012 + GFF620 0.47 -1.1
Or see this region's nucleotide sequence