Strain Fitness in Methylophilus sp. DMC18 around GFF2042

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x
81,794	-				-1.7
81,862	-		GFF2040	0.12	-0.3
81,893	+		GFF2040	0.21	+0.3
81,893	+		GFF2040	0.21	+1.1
81,893	+		GFF2040	0.21	+0.1
81,893	+		GFF2040	0.21	-0.5
81,893	+		GFF2040	0.21	-0.7
81,894	-		GFF2040	0.22	-0.5
81,894	-		GFF2040	0.22	-1.5
81,894	-		GFF2040	0.22	-0.8
81,894	-		GFF2040	0.22	+0.2
81,912	+		GFF2040	0.27	+0.8
81,913	-		GFF2040	0.27	+0.8
81,928	+		GFF2040	0.32	-0.5
81,929	-		GFF2040	0.32	+0.9
81,929	-		GFF2040	0.32	-1.2
81,951	+		GFF2040	0.39	+0.6
81,971	-		GFF2040	0.45	+1.0
82,020	+		GFF2040	0.59	-1.7
82,024	+		GFF2040	0.60	+0.4
82,024	+		GFF2040	0.60	-1.0
82,024	+		GFF2040	0.60	-0.7
82,024	+		GFF2040	0.60	-1.4
82,025	-		GFF2040	0.61	-0.9
82,046	-		GFF2040	0.67	-0.5
82,046	-		GFF2040	0.67	-2.4
82,073	-		GFF2040	0.75	+0.3
82,073	-		GFF2040	0.75	-0.9
82,090	+		GFF2040	0.80	-0.3
82,090	+		GFF2040	0.80	-0.9
82,090	+		GFF2040	0.80	-0.2
82,124	-				-0.3
82,133	+				+0.2
82,134	-				-1.5
82,136	-				-0.9
82,136	-				-0.9
82,136	-				-1.7
82,136	-				+0.8
82,207	+				+0.1
82,207	+				+0.1
82,207	+				-1.0
82,208	-				+0.1
82,208	-				-1.1
82,208	-				-3.0
82,212	+				-0.6
82,212	+				-0.6
82,212	+				-0.2
82,212	+				+0.7
82,213	-				-1.1
82,213	-				+0.1
82,237	-		GFF2041	0.11	-1.0
82,265	+		GFF2041	0.17	-1.4
82,286	+		GFF2041	0.22	-0.7
82,286	+		GFF2041	0.22	+0.1
82,286	+		GFF2041	0.22	+0.8
82,434	+		GFF2041	0.54	-0.4
82,434	+		GFF2041	0.54	-1.2
82,435	-		GFF2041	0.54	-0.3
82,435	-		GFF2041	0.54	-0.2
82,435	-		GFF2041	0.54	-0.2
82,435	-		GFF2041	0.54	+1.1
82,435	-		GFF2041	0.54	-0.6
82,435	-		GFF2041	0.54	+0.1
82,435	-		GFF2041	0.54	-0.5
82,456	+		GFF2041	0.59	-1.5
82,542	-		GFF2041	0.78	+1.7
82,612	+				-0.1
82,612	+				-1.2
82,612	+				+0.8
82,612	+				-1.4
82,612	+				-0.9
82,612	+				+0.8
82,613	-				-0.1
82,613	-				-0.7
82,613	-				-0.5
82,613	-				-0.2
82,613	-				+0.1
82,613	-				-0.7
82,613	-				+0.5
82,654	+				+0.2
82,654	+				+0.5
82,654	+				-1.5
82,662	+				+0.1
82,662	+				-0.9
82,662	+				-0.5
82,662	+				+0.3
82,663	-				-0.0
82,696	-				-1.2
82,696	-				+0.1
82,762	+				-1.8
82,763	-				-0.9
82,773	+		GFF2042	0.11	-0.9
82,805	+		GFF2042	0.14	-0.9
82,806	-		GFF2042	0.14	-0.1
82,806	-		GFF2042	0.14	-0.6
82,835	-		GFF2042	0.17	-0.5
83,009	+		GFF2042	0.34	-0.6
83,009	+		GFF2042	0.34	+0.1
83,009	+		GFF2042	0.34	+0.5
83,009	+		GFF2042	0.34	-0.7
83,009	+		GFF2042	0.34	+0.1
83,009	+		GFF2042	0.34	-1.9
83,010	-		GFF2042	0.34	-0.9
83,010	-		GFF2042	0.34	-0.9
83,010	-		GFF2042	0.34	-1.2
83,010	-		GFF2042	0.34	-0.9
83,010	-		GFF2042	0.34	-0.9
83,010	-		GFF2042	0.34	-1.4
83,010	-		GFF2042	0.34	+0.9
83,010	-		GFF2042	0.34	-1.0
83,055	+		GFF2042	0.39	-1.9
83,056	-		GFF2042	0.39	-1.2
83,056	-		GFF2042	0.39	-1.2
83,068	+		GFF2042	0.40	-0.9
83,068	+		GFF2042	0.40	-1.5
83,068	+		GFF2042	0.40	+0.7
83,068	+		GFF2042	0.40	-0.7
83,068	+		GFF2042	0.40	-0.9
83,068	+		GFF2042	0.40	-2.2
83,069	-		GFF2042	0.40	-1.2
83,069	-		GFF2042	0.40	+0.1
83,069	-		GFF2042	0.40	-1.9
83,069	-		GFF2042	0.40	-2.4
83,069	-		GFF2042	0.40	-0.7
83,069	-		GFF2042	0.40	-0.9
83,069	-		GFF2042	0.40	-0.4
83,142	+		GFF2042	0.47	-1.5
83,154	+		GFF2042	0.49	+0.1
83,219	+		GFF2042	0.55	-2.4
83,220	-		GFF2042	0.55	+0.1
83,226	+		GFF2042	0.56	+1.1
83,283	+		GFF2042	0.61	+0.5
83,284	-		GFF2042	0.61	+0.9
83,284	-		GFF2042	0.61	-0.9
83,284	-		GFF2042	0.61	+0.8
83,284	-		GFF2042	0.61	+0.1
83,327	+		GFF2042	0.66	-0.1
83,327	+		GFF2042	0.66	-1.6
83,327	+		GFF2042	0.66	-1.6
83,327	+		GFF2042	0.66	-1.7
83,328	-		GFF2042	0.66	+1.4
83,328	-		GFF2042	0.66	+0.1
83,328	-		GFF2042	0.66	-0.9
83,396	-		GFF2042	0.73	-0.2
83,399	+		GFF2042	0.73	+0.5
83,399	+		GFF2042	0.73	-2.1
83,399	+		GFF2042	0.73	+0.5
83,399	+		GFF2042	0.73	-1.4
83,399	+		GFF2042	0.73	-0.7
83,400	-		GFF2042	0.73	-0.0
83,400	-		GFF2042	0.73	-1.2
83,400	-		GFF2042	0.73	+0.3
83,400	-		GFF2042	0.73	-0.5
83,400	-		GFF2042	0.73	+1.2
83,400	-		GFF2042	0.73	-0.5
83,400	-		GFF2042	0.73	-2.4
83,400	-		GFF2042	0.73	-1.1
83,400	-		GFF2042	0.73	+0.8
83,400	-		GFF2042	0.73	-0.2
83,400	-		GFF2042	0.73	-0.5
83,400	-		GFF2042	0.73	-1.9
83,400	-		GFF2042	0.73	-1.5
83,400	-		GFF2042	0.73	-0.7
83,400	-		GFF2042	0.73	+0.8
83,400	-		GFF2042	0.73	-0.9
83,400	-		GFF2042	0.73	-1.6
83,401	+		GFF2042	0.73	-0.3
83,401	+		GFF2042	0.73	+0.3
83,401	+		GFF2042	0.73	-1.2
83,401	+		GFF2042	0.73	-1.2
83,401	+		GFF2042	0.73	-0.9
83,401	+		GFF2042	0.73	+0.1
83,401	+		GFF2042	0.73	-0.7
83,402	-		GFF2042	0.73	-0.4
83,402	-		GFF2042	0.73	-0.3
83,402	-		GFF2042	0.73	-1.2
83,402	-		GFF2042	0.73	+0.1
83,402	-		GFF2042	0.73	+0.3
83,402	-		GFF2042	0.73	+0.1
83,402	-		GFF2042	0.73	-0.3
83,402	-		GFF2042	0.73	+0.8
83,403	+		GFF2042	0.73	-1.4
83,403	+		GFF2042	0.73	+0.1
83,403	+		GFF2042	0.73	-2.0
83,403	+		GFF2042	0.73	-1.0
83,403	+		GFF2042	0.73	-0.7
83,403	+		GFF2042	0.73	-2.2
83,403	+		GFF2042	0.73	+0.3
83,403	+		GFF2042	0.73	-1.2
83,403	+		GFF2042	0.73	-0.1
83,403	+		GFF2042	0.73	-0.0
83,404	-		GFF2042	0.73	+1.9
83,404	-		GFF2042	0.73	-1.1
83,404	-		GFF2042	0.73	+0.5
83,404	-		GFF2042	0.73	-0.5
83,404	-		GFF2042	0.73	-1.1
83,404	-		GFF2042	0.73	-1.5
83,404	-		GFF2042	0.73	+0.1
83,436	+		GFF2042	0.76	-0.2
83,436	+		GFF2042	0.76	-1.9
83,442	+		GFF2042	0.77	-0.1
83,452	+		GFF2042	0.78	-1.2
83,452	+		GFF2042	0.78	-1.2
83,452	+		GFF2042	0.78	+0.1
83,452	+		GFF2042	0.78	-1.2
83,452	+		GFF2042	0.78	-0.9
83,452	+		GFF2042	0.78	-2.7
83,453	-		GFF2042	0.78	+0.2
83,453	-		GFF2042	0.78	-1.9
83,453	-		GFF2042	0.78	-1.7
83,453	-		GFF2042	0.78	+0.3
83,454	+		GFF2042	0.78	-1.9
83,454	+		GFF2042	0.78	-0.3
83,455	-		GFF2042	0.78	-0.5
83,455	-		GFF2042	0.78	-0.1
83,546	+		GFF2042	0.87	+0.3
83,546	+		GFF2042	0.87	+0.1
83,546	+		GFF2042	0.87	+0.1
83,546	+		GFF2042	0.87	-0.6
83,546	+		GFF2042	0.87	-0.1
83,546	+		GFF2042	0.87	-0.9
83,546	+		GFF2042	0.87	+0.3
83,547	-		GFF2042	0.87	-1.7
83,547	-		GFF2042	0.87	-1.3
83,547	-		GFF2042	0.87	-1.2
83,547	-		GFF2042	0.87	-1.2
83,547	-		GFF2042	0.87	-0.2
83,563	+		GFF2042	0.89	-0.7
83,564	-		GFF2042	0.89	+0.1
83,564	-		GFF2042	0.89	-0.2
83,612	+				-0.8
83,624	+				+0.1
83,641	+				-1.2
83,641	+				+1.1
83,641	+				+0.7
83,641	+				+0.3
83,642	-				-1.2
83,642	-				-1.5
83,643	+				-0.9
83,656	-				-0.9
83,668	-				-0.5
83,671	+				-1.1
83,671	+				+0.1
83,671	+				-1.0
83,671	+				-0.9
83,672	-				-0.4
83,683	-				-0.1
83,683	-				-0.1
83,684	+				-1.4
83,685	-				-0.7
83,685	-				-0.9
83,715	+				-0.2
83,716	-				-0.6
83,719	-				-1.2
83,719	-				-0.2
83,719	-				-1.7
83,742	+				-2.5
83,742	+				+1.1
83,743	-				+0.1
83,743	-				-2.2
83,755	+				-0.6
83,755	+				-0.5
83,755	+				-1.1
83,755	+				-1.0
83,755	+				-1.2
83,756	-				+0.1
83,756	-				+0.1
83,756	-				+0.1
83,756	-				-0.7
83,759	+				+0.9
83,759	+				-0.3
83,759	+				-1.2
83,759	+				+0.1
83,760	-				-0.4
83,760	-				+0.2
83,760	-				-1.5
83,760	-				-0.4
83,766	+				-1.7
83,766	+				-0.3
83,767	-				-1.2
83,788	+				-0.0
83,788	+				-0.9
83,788	+				+0.1
83,788	+				-1.1
83,789	-				-2.4
83,820	+		GFF2043	0.16	+0.3
83,820	+		GFF2043	0.16	+0.3
83,821	-		GFF2043	0.16	-1.2
83,825	+		GFF2043	0.18	-0.1
83,826	-		GFF2043	0.19	-0.9
83,826	-		GFF2043	0.19	-0.2
83,879	-		GFF2043	0.44	-2.1
83,893	-		GFF2043	0.51	-1.5
83,893	-		GFF2043	0.51	-0.4
83,893	-		GFF2043	0.51	-1.4
83,900	+		GFF2043	0.55	-1.4
83,914	-		GFF2043	0.61	-0.2
83,919	+		GFF2043	0.64	-0.2
83,919	+		GFF2043	0.64	-1.5
83,919	+		GFF2043	0.64	+0.3
83,920	-		GFF2043	0.64	-0.9
83,920	-		GFF2043	0.64	-0.1
83,920	-		GFF2043	0.64	-0.2
83,920	-		GFF2043	0.64	-0.8
83,927	+		GFF2043	0.68	-1.2
83,927	+		GFF2043	0.68	-1.7
83,927	+		GFF2043	0.68	-0.7
83,931	+		GFF2043	0.70	-0.5
83,931	+		GFF2043	0.70	-0.2
83,931	+		GFF2043	0.70	-0.9
83,931	+		GFF2043	0.70	+0.2
83,931	+		GFF2043	0.70	-1.5
83,931	+		GFF2043	0.70	-1.2
83,931	+		GFF2043	0.70	-1.0
83,931	+		GFF2043	0.70	+0.1
83,931	+		GFF2043	0.70	-1.5
83,932	-		GFF2043	0.70	-1.3
83,932	-		GFF2043	0.70	-0.9
83,932	-		GFF2043	0.70	-1.9
83,932	-		GFF2043	0.70	-2.1
83,932	-		GFF2043	0.70	-0.9
83,932	-		GFF2043	0.70	+1.1
83,932	-		GFF2043	0.70	-0.9
83,932	-		GFF2043	0.70	+0.1
83,932	-		GFF2043	0.70	+0.3
83,933	-		GFF2043	0.71	-1.8
83,936	+		GFF2043	0.72	+0.5
83,936	+		GFF2043	0.72	-0.8
83,936	+		GFF2043	0.72	-1.2
83,936	+		GFF2043	0.72	-0.1
83,936	+		GFF2043	0.72	-0.7
83,937	-		GFF2043	0.72	-0.7
83,937	-		GFF2043	0.72	-2.2
83,955	-		GFF2043	0.81	+1.1
83,957	-		GFF2043	0.82	+0.6
83,988	+				-0.4
83,988	+				-0.4
83,988	+				+0.1
83,989	-				-0.5
83,989	-				-0.9
83,995	-				+0.5
83,995	-				-1.4
83,995	-				-0.2
84,031	+				+0.3
84,031	+				-0.9
84,031	+				+0.3
84,031	+				-1.2
84,031	+				-1.2
84,032	-				+0.2
84,032	-				-0.6
84,032	-				-0.5
84,032	-				-0.1
84,038	+				-0.9
84,038	+				-2.3
84,038	+				-0.4
84,038	+				-0.5
84,038	+				-0.0
84,038	+				-0.7
84,038	+				-0.6
84,039	-				-0.4
84,039	-				+0.7
84,039	-				-0.9
84,039	-				-1.1
84,039	-				-0.7
84,039	-				+0.7
84,039	-				-1.8
84,069	-				-0.5
84,085	+				-0.8
84,085	+				-0.4
84,086	-				+0.2
84,086	-				+0.1
84,086	-				-1.5
84,086	-				-0.5
84,086	-				-0.7
84,086	-				-1.2
84,088	+				-0.8
84,088	+				-0.9
84,088	+				-0.7
84,089	-				+1.1
84,089	-				-0.0
84,089	-				-0.2
84,089	-				-1.3
84,089	-				-0.1
84,093	+				-0.8
84,093	+				-0.5
84,104	+				-1.4
84,134	+				-1.5
84,135	-				-0.1
84,137	+				-0.7
84,137	+				-0.2
84,138	-				+2.4
84,138	-				-0.0
84,138	-				-2.1
84,180	+				+0.2