Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1335 and GFF1336 are separated by 59 nucleotides GFF1336 and GFF1337 overlap by 1 nucleotides GFF1337 and GFF1338 overlap by 1 nucleotides
GFF1335 - hypothetical protein, at 598,680 to 600,941
GFF1335
GFF1336 - Motility protein B, at 601,001 to 601,936
GFF1336
GFF1337 - Chemotaxis protein PomA, at 601,936 to 602,688
GFF1337
GFF1338 - RNA polymerase sigma factor FliA, at 602,688 to 603,422
GFF1338
Position (kb) 601
602 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 600.010 kb on + strand, within GFF1335 at 600.011 kb on - strand, within GFF1335 at 600.072 kb on + strand, within GFF1335 at 600.072 kb on + strand, within GFF1335 at 600.072 kb on + strand, within GFF1335 at 600.073 kb on - strand, within GFF1335 at 600.138 kb on + strand, within GFF1335 at 600.138 kb on + strand, within GFF1335 at 600.228 kb on + strand, within GFF1335 at 600.228 kb on + strand, within GFF1335 at 600.229 kb on - strand, within GFF1335 at 600.329 kb on + strand, within GFF1335 at 600.511 kb on + strand, within GFF1335 at 600.637 kb on + strand, within GFF1335 at 600.672 kb on + strand, within GFF1335 at 600.673 kb on - strand, within GFF1335 at 600.693 kb on + strand, within GFF1335 at 600.693 kb on + strand, within GFF1335 at 600.693 kb on + strand, within GFF1335 at 600.693 kb on + strand, within GFF1335 at 600.694 kb on - strand, within GFF1335 at 600.694 kb on - strand, within GFF1335 at 600.706 kb on + strand, within GFF1335 at 600.706 kb on + strand, within GFF1335 at 600.706 kb on + strand, within GFF1335 at 600.721 kb on + strand at 600.765 kb on - strand at 600.771 kb on - strand at 600.792 kb on + strand at 600.792 kb on + strand at 600.793 kb on - strand at 600.793 kb on - strand at 600.793 kb on - strand at 600.793 kb on - strand at 600.793 kb on - strand at 600.877 kb on - strand at 600.901 kb on + strand at 600.902 kb on - strand at 600.902 kb on - strand at 600.911 kb on + strand at 600.911 kb on + strand at 600.953 kb on + strand at 601.045 kb on + strand at 601.045 kb on + strand at 601.045 kb on + strand at 601.045 kb on + strand at 601.045 kb on + strand at 601.369 kb on + strand, within GFF1336 at 601.369 kb on + strand, within GFF1336 at 601.395 kb on + strand, within GFF1336 at 601.430 kb on + strand, within GFF1336 at 601.431 kb on - strand, within GFF1336 at 601.450 kb on + strand, within GFF1336 at 601.450 kb on + strand, within GFF1336 at 601.450 kb on + strand, within GFF1336 at 601.450 kb on + strand, within GFF1336 at 601.450 kb on + strand, within GFF1336 at 601.450 kb on + strand, within GFF1336 at 601.451 kb on - strand, within GFF1336 at 601.451 kb on - strand, within GFF1336 at 601.451 kb on - strand, within GFF1336 at 601.451 kb on - strand, within GFF1336 at 601.451 kb on - strand, within GFF1336 at 601.451 kb on - strand, within GFF1336 at 601.451 kb on - strand, within GFF1336 at 601.451 kb on - strand, within GFF1336 at 601.453 kb on - strand, within GFF1336 at 601.453 kb on - strand, within GFF1336 at 601.544 kb on + strand, within GFF1336 at 601.623 kb on + strand, within GFF1336 at 601.625 kb on + strand, within GFF1336 at 601.625 kb on + strand, within GFF1336 at 601.625 kb on + strand, within GFF1336 at 601.625 kb on + strand, within GFF1336 at 601.625 kb on + strand, within GFF1336 at 601.625 kb on + strand, within GFF1336 at 601.625 kb on + strand, within GFF1336 at 601.625 kb on + strand, within GFF1336 at 601.625 kb on + strand, within GFF1336 at 601.625 kb on + strand, within GFF1336 at 601.626 kb on - strand, within GFF1336 at 601.626 kb on - strand, within GFF1336 at 601.626 kb on - strand, within GFF1336 at 601.626 kb on - strand, within GFF1336 at 601.626 kb on - strand, within GFF1336 at 601.626 kb on - strand, within GFF1336 at 601.626 kb on - strand, within GFF1336 at 601.626 kb on - strand, within GFF1336 at 601.626 kb on - strand, within GFF1336 at 601.626 kb on - strand, within GFF1336 at 601.626 kb on - strand, within GFF1336 at 601.629 kb on + strand, within GFF1336 at 601.629 kb on + strand, within GFF1336 at 601.629 kb on + strand, within GFF1336 at 601.629 kb on + strand, within GFF1336 at 601.630 kb on - strand, within GFF1336 at 601.630 kb on - strand, within GFF1336 at 601.630 kb on - strand, within GFF1336 at 601.715 kb on + strand, within GFF1336 at 601.716 kb on - strand, within GFF1336 at 601.805 kb on - strand, within GFF1336 at 601.830 kb on + strand, within GFF1336 at 601.830 kb on + strand, within GFF1336 at 601.831 kb on - strand, within GFF1336 at 601.831 kb on - strand, within GFF1336 at 601.831 kb on - strand, within GFF1336 at 601.831 kb on - strand, within GFF1336 at 601.831 kb on - strand, within GFF1336 at 601.831 kb on - strand, within GFF1336 at 601.875 kb on + strand at 601.876 kb on - strand at 601.932 kb on + strand at 601.932 kb on + strand at 601.932 kb on + strand at 601.933 kb on - strand at 601.933 kb on - strand at 601.933 kb on - strand at 602.086 kb on + strand, within GFF1337 at 602.086 kb on + strand, within GFF1337 at 602.110 kb on + strand, within GFF1337 at 602.110 kb on + strand, within GFF1337 at 602.110 kb on + strand, within GFF1337 at 602.110 kb on + strand, within GFF1337 at 602.111 kb on - strand, within GFF1337 at 602.111 kb on - strand, within GFF1337 at 602.117 kb on + strand, within GFF1337 at 602.117 kb on + strand, within GFF1337 at 602.117 kb on + strand, within GFF1337 at 602.118 kb on - strand, within GFF1337 at 602.222 kb on - strand, within GFF1337 at 602.235 kb on - strand, within GFF1337 at 602.285 kb on + strand, within GFF1337 at 602.288 kb on + strand, within GFF1337 at 602.288 kb on + strand, within GFF1337 at 602.288 kb on + strand, within GFF1337 at 602.289 kb on - strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.291 kb on + strand, within GFF1337 at 602.292 kb on - strand, within GFF1337 at 602.292 kb on - strand, within GFF1337 at 602.292 kb on - strand, within GFF1337 at 602.292 kb on - strand, within GFF1337 at 602.292 kb on - strand, within GFF1337 at 602.292 kb on - strand, within GFF1337 at 602.292 kb on - strand, within GFF1337 at 602.292 kb on - strand, within GFF1337 at 602.292 kb on - strand, within GFF1337 at 602.292 kb on - strand, within GFF1337 at 602.292 kb on - strand, within GFF1337 at 602.295 kb on + strand, within GFF1337 at 602.295 kb on + strand, within GFF1337 at 602.295 kb on + strand, within GFF1337 at 602.295 kb on + strand, within GFF1337 at 602.296 kb on - strand, within GFF1337 at 602.296 kb on - strand, within GFF1337 at 602.296 kb on - strand, within GFF1337 at 602.296 kb on - strand, within GFF1337 at 602.623 kb on + strand at 602.623 kb on + strand at 602.810 kb on + strand, within GFF1338 at 602.824 kb on + strand, within GFF1338 at 602.827 kb on + strand, within GFF1338 at 602.827 kb on + strand, within GFF1338 at 602.827 kb on + strand, within GFF1338 at 602.828 kb on - strand, within GFF1338 at 602.828 kb on - strand, within GFF1338 at 602.842 kb on - strand, within GFF1338 at 602.842 kb on - strand, within GFF1338 at 602.878 kb on - strand, within GFF1338 at 602.930 kb on + strand, within GFF1338
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 0.5x remove 600,010 + GFF1335 0.59 -0.9 600,011 - GFF1335 0.59 -0.3 600,072 + GFF1335 0.62 +0.5 600,072 + GFF1335 0.62 +0.2 600,072 + GFF1335 0.62 -0.5 600,073 - GFF1335 0.62 -0.8 600,138 + GFF1335 0.64 -1.6 600,138 + GFF1335 0.64 +0.2 600,228 + GFF1335 0.68 -2.4 600,228 + GFF1335 0.68 +0.5 600,229 - GFF1335 0.68 +1.0 600,329 + GFF1335 0.73 -1.2 600,511 + GFF1335 0.81 -1.4 600,637 + GFF1335 0.87 +0.6 600,672 + GFF1335 0.88 -0.6 600,673 - GFF1335 0.88 -0.0 600,693 + GFF1335 0.89 -0.8 600,693 + GFF1335 0.89 +0.1 600,693 + GFF1335 0.89 -0.7 600,693 + GFF1335 0.89 -0.5 600,694 - GFF1335 0.89 -2.0 600,694 - GFF1335 0.89 -0.8 600,706 + GFF1335 0.90 -1.6 600,706 + GFF1335 0.90 -3.0 600,706 + GFF1335 0.90 -1.2 600,721 + -0.1 600,765 - -0.0 600,771 - +1.0 600,792 + -1.0 600,792 + -0.7 600,793 - +0.1 600,793 - -2.0 600,793 - -1.5 600,793 - +1.0 600,793 - -3.0 600,877 - -1.6 600,901 + +0.4 600,902 - -0.1 600,902 - -1.4 600,911 + -0.9 600,911 + -2.4 600,953 + +0.1 601,045 + -1.4 601,045 + -1.3 601,045 + -1.5 601,045 + -0.0 601,045 + +0.1 601,369 + GFF1336 0.39 +1.0 601,369 + GFF1336 0.39 -0.8 601,395 + GFF1336 0.42 -0.6 601,430 + GFF1336 0.46 -1.5 601,431 - GFF1336 0.46 -0.6 601,450 + GFF1336 0.48 +1.0 601,450 + GFF1336 0.48 +0.6 601,450 + GFF1336 0.48 -0.3 601,450 + GFF1336 0.48 -0.6 601,450 + GFF1336 0.48 +0.4 601,450 + GFF1336 0.48 -0.4 601,451 - GFF1336 0.48 +0.5 601,451 - GFF1336 0.48 -1.0 601,451 - GFF1336 0.48 -1.4 601,451 - GFF1336 0.48 -0.0 601,451 - GFF1336 0.48 -1.9 601,451 - GFF1336 0.48 +0.8 601,451 - GFF1336 0.48 -0.5 601,451 - GFF1336 0.48 -2.0 601,453 - GFF1336 0.48 -0.3 601,453 - GFF1336 0.48 -0.8 601,544 + GFF1336 0.58 -0.4 601,623 + GFF1336 0.66 +0.8 601,625 + GFF1336 0.67 -1.0 601,625 + GFF1336 0.67 +0.3 601,625 + GFF1336 0.67 +0.4 601,625 + GFF1336 0.67 -1.2 601,625 + GFF1336 0.67 -1.0 601,625 + GFF1336 0.67 +0.5 601,625 + GFF1336 0.67 -0.6 601,625 + GFF1336 0.67 -1.2 601,625 + GFF1336 0.67 -0.1 601,625 + GFF1336 0.67 -0.5 601,626 - GFF1336 0.67 -1.9 601,626 - GFF1336 0.67 -1.4 601,626 - GFF1336 0.67 -1.0 601,626 - GFF1336 0.67 +0.1 601,626 - GFF1336 0.67 -0.6 601,626 - GFF1336 0.67 -1.0 601,626 - GFF1336 0.67 -0.6 601,626 - GFF1336 0.67 +0.1 601,626 - GFF1336 0.67 +0.4 601,626 - GFF1336 0.67 -0.2 601,626 - GFF1336 0.67 +0.4 601,629 + GFF1336 0.67 -1.5 601,629 + GFF1336 0.67 -0.4 601,629 + GFF1336 0.67 -1.4 601,629 + GFF1336 0.67 +0.1 601,630 - GFF1336 0.67 -1.2 601,630 - GFF1336 0.67 -0.4 601,630 - GFF1336 0.67 -1.4 601,715 + GFF1336 0.76 -0.6 601,716 - GFF1336 0.76 -1.6 601,805 - GFF1336 0.86 -0.6 601,830 + GFF1336 0.89 +0.7 601,830 + GFF1336 0.89 -1.6 601,831 - GFF1336 0.89 +0.0 601,831 - GFF1336 0.89 -1.0 601,831 - GFF1336 0.89 -0.5 601,831 - GFF1336 0.89 -0.3 601,831 - GFF1336 0.89 -0.0 601,831 - GFF1336 0.89 -0.6 601,875 + -2.4 601,876 - -0.5 601,932 + -0.8 601,932 + -1.5 601,932 + +0.5 601,933 - -0.8 601,933 - -1.1 601,933 - -0.6 602,086 + GFF1337 0.20 +0.2 602,086 + GFF1337 0.20 -0.9 602,110 + GFF1337 0.23 +0.6 602,110 + GFF1337 0.23 -1.6 602,110 + GFF1337 0.23 +0.8 602,110 + GFF1337 0.23 +0.2 602,111 - GFF1337 0.23 -0.0 602,111 - GFF1337 0.23 -1.5 602,117 + GFF1337 0.24 -0.4 602,117 + GFF1337 0.24 +0.2 602,117 + GFF1337 0.24 -0.0 602,118 - GFF1337 0.24 -1.4 602,222 - GFF1337 0.38 +1.0 602,235 - GFF1337 0.40 -0.4 602,285 + GFF1337 0.46 -0.4 602,288 + GFF1337 0.47 -0.0 602,288 + GFF1337 0.47 -1.4 602,288 + GFF1337 0.47 -1.2 602,289 - GFF1337 0.47 -2.0 602,291 + GFF1337 0.47 -0.6 602,291 + GFF1337 0.47 +0.3 602,291 + GFF1337 0.47 -0.3 602,291 + GFF1337 0.47 -1.9 602,291 + GFF1337 0.47 -0.1 602,291 + GFF1337 0.47 -1.1 602,291 + GFF1337 0.47 +0.6 602,291 + GFF1337 0.47 -2.4 602,291 + GFF1337 0.47 -0.3 602,291 + GFF1337 0.47 -1.0 602,291 + GFF1337 0.47 -0.6 602,291 + GFF1337 0.47 -0.0 602,291 + GFF1337 0.47 -0.4 602,291 + GFF1337 0.47 -0.2 602,291 + GFF1337 0.47 -1.0 602,291 + GFF1337 0.47 +1.0 602,291 + GFF1337 0.47 +0.2 602,291 + GFF1337 0.47 -0.6 602,291 + GFF1337 0.47 +0.5 602,292 - GFF1337 0.47 +0.0 602,292 - GFF1337 0.47 +0.8 602,292 - GFF1337 0.47 +1.0 602,292 - GFF1337 0.47 -1.0 602,292 - GFF1337 0.47 -0.0 602,292 - GFF1337 0.47 -0.5 602,292 - GFF1337 0.47 -1.9 602,292 - GFF1337 0.47 +0.5 602,292 - GFF1337 0.47 -0.3 602,292 - GFF1337 0.47 -1.0 602,292 - GFF1337 0.47 -0.0 602,295 + GFF1337 0.48 -1.3 602,295 + GFF1337 0.48 -0.4 602,295 + GFF1337 0.48 -0.0 602,295 + GFF1337 0.48 -1.8 602,296 - GFF1337 0.48 -0.8 602,296 - GFF1337 0.48 -1.0 602,296 - GFF1337 0.48 -1.0 602,296 - GFF1337 0.48 -1.4 602,623 + -1.3 602,623 + -0.4 602,810 + GFF1338 0.17 -1.0 602,824 + GFF1338 0.19 -1.0 602,827 + GFF1338 0.19 -0.0 602,827 + GFF1338 0.19 -1.0 602,827 + GFF1338 0.19 -1.4 602,828 - GFF1338 0.19 -0.6 602,828 - GFF1338 0.19 +1.2 602,842 - GFF1338 0.21 -1.4 602,842 - GFF1338 0.21 -1.4 602,878 - GFF1338 0.26 -1.1 602,930 + GFF1338 0.33 -1.4
Or see this region's nucleotide sequence