Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06790

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06788 and MPMX19_06789 are separated by 40 nucleotidesMPMX19_06789 and MPMX19_06790 are separated by 53 nucleotidesMPMX19_06790 and MPMX19_06791 are separated by 247 nucleotidesMPMX19_06791 and MPMX19_06792 are separated by 75 nucleotides MPMX19_06788: MPMX19_06788 - putative protein YiaX1, at 53,322 to 54,305 _06788 MPMX19_06789: MPMX19_06789 - Octopine catabolism/uptake operon regulatory protein OccR, at 54,346 to 55,242 _06789 MPMX19_06790: MPMX19_06790 - D-amino acid dehydrogenase, at 55,296 to 56,621 _06790 MPMX19_06791: MPMX19_06791 - Leucine-responsive regulatory protein, at 56,869 to 57,345 _06791 MPMX19_06792: MPMX19_06792 - 2-hydroxymuconic semialdehyde dehydrogenase, at 57,421 to 58,944 _06792 Position (kb) 55 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 54.310 kb on + strandat 54.311 kb on - strandat 54.311 kb on - strandat 54.311 kb on - strandat 54.312 kb on + strandat 54.312 kb on + strandat 54.312 kb on + strandat 54.313 kb on - strandat 54.313 kb on - strandat 54.988 kb on + strand, within MPMX19_06789at 54.988 kb on + strand, within MPMX19_06789at 54.988 kb on + strand, within MPMX19_06789at 54.989 kb on - strand, within MPMX19_06789at 54.989 kb on - strand, within MPMX19_06789at 55.519 kb on + strand, within MPMX19_06790at 55.520 kb on - strand, within MPMX19_06790at 55.520 kb on - strand, within MPMX19_06790at 55.520 kb on - strand, within MPMX19_06790at 56.314 kb on + strand, within MPMX19_06790at 56.314 kb on + strand, within MPMX19_06790at 56.314 kb on + strand, within MPMX19_06790at 56.314 kb on + strand, within MPMX19_06790at 56.314 kb on + strand, within MPMX19_06790at 56.315 kb on - strand, within MPMX19_06790at 56.315 kb on - strand, within MPMX19_06790at 56.521 kb on + strandat 56.521 kb on + strandat 56.522 kb on - strandat 56.522 kb on - strandat 56.655 kb on + strandat 56.655 kb on + strandat 56.655 kb on + strandat 56.656 kb on - strandat 56.656 kb on - strandat 56.656 kb on - strandat 56.706 kb on + strandat 56.707 kb on - strandat 56.707 kb on - strandat 56.790 kb on + strandat 56.791 kb on - strandat 56.818 kb on + strandat 56.819 kb on - strandat 56.831 kb on + strandat 57.010 kb on + strand, within MPMX19_06791at 57.010 kb on + strand, within MPMX19_06791at 57.010 kb on + strand, within MPMX19_06791at 57.011 kb on - strand, within MPMX19_06791at 57.022 kb on + strand, within MPMX19_06791at 57.023 kb on - strand, within MPMX19_06791at 57.023 kb on - strand, within MPMX19_06791at 57.086 kb on + strand, within MPMX19_06791at 57.086 kb on + strand, within MPMX19_06791at 57.087 kb on - strand, within MPMX19_06791at 57.184 kb on + strand, within MPMX19_06791at 57.184 kb on + strand, within MPMX19_06791at 57.184 kb on + strand, within MPMX19_06791at 57.185 kb on - strand, within MPMX19_06791at 57.185 kb on - strand, within MPMX19_06791at 57.185 kb on - strand, within MPMX19_06791at 57.220 kb on + strand, within MPMX19_06791at 57.221 kb on - strand, within MPMX19_06791at 57.272 kb on - strand, within MPMX19_06791at 57.272 kb on - strand, within MPMX19_06791at 57.272 kb on - strand, within MPMX19_06791at 57.272 kb on - strand, within MPMX19_06791at 57.280 kb on + strand, within MPMX19_06791at 57.281 kb on - strand, within MPMX19_06791at 57.281 kb on - strand, within MPMX19_06791at 57.485 kb on + strandat 57.486 kb on - strandat 57.500 kb on + strandat 57.500 kb on + strandat 57.500 kb on + strandat 57.501 kb on - strandat 57.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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54,310 + -1.0
54,311 - -0.9
54,311 - -0.4
54,311 - -1.1
54,312 + -0.3
54,312 + +0.2
54,312 + +0.1
54,313 - -0.7
54,313 - -0.0
54,988 + MPMX19_06789 0.72 -0.5
54,988 + MPMX19_06789 0.72 -0.3
54,988 + MPMX19_06789 0.72 -1.4
54,989 - MPMX19_06789 0.72 -0.4
54,989 - MPMX19_06789 0.72 +0.0
55,519 + MPMX19_06790 0.17 -2.0
55,520 - MPMX19_06790 0.17 +0.0
55,520 - MPMX19_06790 0.17 -3.0
55,520 - MPMX19_06790 0.17 -1.2
56,314 + MPMX19_06790 0.77 -3.2
56,314 + MPMX19_06790 0.77 -0.6
56,314 + MPMX19_06790 0.77 +0.3
56,314 + MPMX19_06790 0.77 +2.4
56,314 + MPMX19_06790 0.77 -0.1
56,315 - MPMX19_06790 0.77 -0.5
56,315 - MPMX19_06790 0.77 -1.4
56,521 + -0.8
56,521 + +2.2
56,522 - -0.7
56,522 - -0.1
56,655 + -0.2
56,655 + -0.7
56,655 + -2.1
56,656 - -0.2
56,656 - -2.1
56,656 - -1.4
56,706 + -1.5
56,707 - -2.1
56,707 - -0.7
56,790 + -0.5
56,791 - +0.2
56,818 + +0.3
56,819 - -0.9
56,831 + +1.4
57,010 + MPMX19_06791 0.30 -1.9
57,010 + MPMX19_06791 0.30 -1.2
57,010 + MPMX19_06791 0.30 +0.2
57,011 - MPMX19_06791 0.30 +0.5
57,022 + MPMX19_06791 0.32 -1.3
57,023 - MPMX19_06791 0.32 -1.1
57,023 - MPMX19_06791 0.32 -0.7
57,086 + MPMX19_06791 0.45 +0.1
57,086 + MPMX19_06791 0.45 -0.9
57,087 - MPMX19_06791 0.46 -1.2
57,184 + MPMX19_06791 0.66 -0.4
57,184 + MPMX19_06791 0.66 -0.2
57,184 + MPMX19_06791 0.66 -0.6
57,185 - MPMX19_06791 0.66 +1.0
57,185 - MPMX19_06791 0.66 -1.2
57,185 - MPMX19_06791 0.66 +0.3
57,220 + MPMX19_06791 0.74 -0.5
57,221 - MPMX19_06791 0.74 -0.1
57,272 - MPMX19_06791 0.84 +0.5
57,272 - MPMX19_06791 0.84 +0.6
57,272 - MPMX19_06791 0.84 +0.2
57,272 - MPMX19_06791 0.84 -1.4
57,280 + MPMX19_06791 0.86 +0.2
57,281 - MPMX19_06791 0.86 -0.1
57,281 - MPMX19_06791 0.86 -0.2
57,485 + -0.7
57,486 - +0.5
57,500 + +0.4
57,500 + -1.2
57,500 + +0.0
57,501 - -0.6
57,501 - -0.0

Or see this region's nucleotide sequence