Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06788 and MPMX19_06789 are separated by 40 nucleotides MPMX19_06789 and MPMX19_06790 are separated by 53 nucleotides MPMX19_06790 and MPMX19_06791 are separated by 247 nucleotides MPMX19_06791 and MPMX19_06792 are separated by 75 nucleotides
MPMX19_06788: MPMX19_06788 - putative protein YiaX1, at 53,322 to 54,305
_06788
MPMX19_06789: MPMX19_06789 - Octopine catabolism/uptake operon regulatory protein OccR, at 54,346 to 55,242
_06789
MPMX19_06790: MPMX19_06790 - D-amino acid dehydrogenase, at 55,296 to 56,621
_06790
MPMX19_06791: MPMX19_06791 - Leucine-responsive regulatory protein, at 56,869 to 57,345
_06791
MPMX19_06792: MPMX19_06792 - 2-hydroxymuconic semialdehyde dehydrogenase, at 57,421 to 58,944
_06792
Position (kb)
55
56
57 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 54.310 kb on + strand at 54.311 kb on - strand at 54.311 kb on - strand at 54.311 kb on - strand at 54.312 kb on + strand at 54.312 kb on + strand at 54.312 kb on + strand at 54.313 kb on - strand at 54.313 kb on - strand at 54.988 kb on + strand, within MPMX19_06789 at 54.988 kb on + strand, within MPMX19_06789 at 54.988 kb on + strand, within MPMX19_06789 at 54.989 kb on - strand, within MPMX19_06789 at 54.989 kb on - strand, within MPMX19_06789 at 55.519 kb on + strand, within MPMX19_06790 at 55.520 kb on - strand, within MPMX19_06790 at 55.520 kb on - strand, within MPMX19_06790 at 55.520 kb on - strand, within MPMX19_06790 at 56.314 kb on + strand, within MPMX19_06790 at 56.314 kb on + strand, within MPMX19_06790 at 56.314 kb on + strand, within MPMX19_06790 at 56.314 kb on + strand, within MPMX19_06790 at 56.314 kb on + strand, within MPMX19_06790 at 56.315 kb on - strand, within MPMX19_06790 at 56.315 kb on - strand, within MPMX19_06790 at 56.521 kb on + strand at 56.521 kb on + strand at 56.522 kb on - strand at 56.522 kb on - strand at 56.655 kb on + strand at 56.655 kb on + strand at 56.655 kb on + strand at 56.656 kb on - strand at 56.656 kb on - strand at 56.656 kb on - strand at 56.706 kb on + strand at 56.707 kb on - strand at 56.707 kb on - strand at 56.790 kb on + strand at 56.791 kb on - strand at 56.818 kb on + strand at 56.819 kb on - strand at 56.831 kb on + strand at 57.010 kb on + strand, within MPMX19_06791 at 57.010 kb on + strand, within MPMX19_06791 at 57.010 kb on + strand, within MPMX19_06791 at 57.011 kb on - strand, within MPMX19_06791 at 57.022 kb on + strand, within MPMX19_06791 at 57.023 kb on - strand, within MPMX19_06791 at 57.023 kb on - strand, within MPMX19_06791 at 57.086 kb on + strand, within MPMX19_06791 at 57.086 kb on + strand, within MPMX19_06791 at 57.087 kb on - strand, within MPMX19_06791 at 57.184 kb on + strand, within MPMX19_06791 at 57.184 kb on + strand, within MPMX19_06791 at 57.184 kb on + strand, within MPMX19_06791 at 57.185 kb on - strand, within MPMX19_06791 at 57.185 kb on - strand, within MPMX19_06791 at 57.185 kb on - strand, within MPMX19_06791 at 57.220 kb on + strand, within MPMX19_06791 at 57.221 kb on - strand, within MPMX19_06791 at 57.272 kb on - strand, within MPMX19_06791 at 57.272 kb on - strand, within MPMX19_06791 at 57.272 kb on - strand, within MPMX19_06791 at 57.272 kb on - strand, within MPMX19_06791 at 57.280 kb on + strand, within MPMX19_06791 at 57.281 kb on - strand, within MPMX19_06791 at 57.281 kb on - strand, within MPMX19_06791 at 57.485 kb on + strand at 57.486 kb on - strand at 57.500 kb on + strand at 57.500 kb on + strand at 57.500 kb on + strand at 57.501 kb on - strand at 57.501 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 54,310 + -1.0 54,311 - -0.9 54,311 - -0.4 54,311 - -1.1 54,312 + -0.3 54,312 + +0.2 54,312 + +0.1 54,313 - -0.7 54,313 - -0.0 54,988 + MPMX19_06789 0.72 -0.5 54,988 + MPMX19_06789 0.72 -0.3 54,988 + MPMX19_06789 0.72 -1.4 54,989 - MPMX19_06789 0.72 -0.4 54,989 - MPMX19_06789 0.72 +0.0 55,519 + MPMX19_06790 0.17 -2.0 55,520 - MPMX19_06790 0.17 +0.0 55,520 - MPMX19_06790 0.17 -3.0 55,520 - MPMX19_06790 0.17 -1.2 56,314 + MPMX19_06790 0.77 -3.2 56,314 + MPMX19_06790 0.77 -0.6 56,314 + MPMX19_06790 0.77 +0.3 56,314 + MPMX19_06790 0.77 +2.4 56,314 + MPMX19_06790 0.77 -0.1 56,315 - MPMX19_06790 0.77 -0.5 56,315 - MPMX19_06790 0.77 -1.4 56,521 + -0.8 56,521 + +2.2 56,522 - -0.7 56,522 - -0.1 56,655 + -0.2 56,655 + -0.7 56,655 + -2.1 56,656 - -0.2 56,656 - -2.1 56,656 - -1.4 56,706 + -1.5 56,707 - -2.1 56,707 - -0.7 56,790 + -0.5 56,791 - +0.2 56,818 + +0.3 56,819 - -0.9 56,831 + +1.4 57,010 + MPMX19_06791 0.30 -1.9 57,010 + MPMX19_06791 0.30 -1.2 57,010 + MPMX19_06791 0.30 +0.2 57,011 - MPMX19_06791 0.30 +0.5 57,022 + MPMX19_06791 0.32 -1.3 57,023 - MPMX19_06791 0.32 -1.1 57,023 - MPMX19_06791 0.32 -0.7 57,086 + MPMX19_06791 0.45 +0.1 57,086 + MPMX19_06791 0.45 -0.9 57,087 - MPMX19_06791 0.46 -1.2 57,184 + MPMX19_06791 0.66 -0.4 57,184 + MPMX19_06791 0.66 -0.2 57,184 + MPMX19_06791 0.66 -0.6 57,185 - MPMX19_06791 0.66 +1.0 57,185 - MPMX19_06791 0.66 -1.2 57,185 - MPMX19_06791 0.66 +0.3 57,220 + MPMX19_06791 0.74 -0.5 57,221 - MPMX19_06791 0.74 -0.1 57,272 - MPMX19_06791 0.84 +0.5 57,272 - MPMX19_06791 0.84 +0.6 57,272 - MPMX19_06791 0.84 +0.2 57,272 - MPMX19_06791 0.84 -1.4 57,280 + MPMX19_06791 0.86 +0.2 57,281 - MPMX19_06791 0.86 -0.1 57,281 - MPMX19_06791 0.86 -0.2 57,485 + -0.7 57,486 - +0.5 57,500 + +0.4 57,500 + -1.2 57,500 + +0.0 57,501 - -0.6 57,501 - -0.0
Or see this region's nucleotide sequence