Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06725

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06723 and MPMX19_06724 are separated by 3 nucleotidesMPMX19_06724 and MPMX19_06725 are separated by 97 nucleotidesMPMX19_06725 and MPMX19_06726 overlap by 4 nucleotidesMPMX19_06726 and MPMX19_06727 are separated by 14 nucleotides MPMX19_06723: MPMX19_06723 - hypothetical protein, at 297,466 to 300,912 _06723 MPMX19_06724: MPMX19_06724 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 300,916 to 301,467 _06724 MPMX19_06725: MPMX19_06725 - dTDP-glucose 4,6-dehydratase 2, at 301,565 to 302,632 _06725 MPMX19_06726: MPMX19_06726 - dTDP-4-dehydrorhamnose reductase, at 302,629 to 303,531 _06726 MPMX19_06727: MPMX19_06727 - Glucose-1-phosphate thymidylyltransferase 1, at 303,546 to 304,409 _06727 Position (kb) 301 302 303Strain fitness (log2 ratio) -1 0 1 2 3at 300.667 kb on + strandat 300.667 kb on + strandat 300.787 kb on + strandat 300.787 kb on + strandat 300.787 kb on + strandat 302.585 kb on + strandat 302.585 kb on + strandat 302.585 kb on + strandat 302.585 kb on + strandat 302.585 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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300,667 + +0.7
300,667 + +3.3
300,787 + -0.9
300,787 + -0.9
300,787 + -0.3
302,585 + +0.3
302,585 + -0.2
302,585 + -1.1
302,585 + -0.1
302,585 + +0.2

Or see this region's nucleotide sequence