Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06513

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06512 and MPMX19_06513 are separated by 9 nucleotidesMPMX19_06513 and MPMX19_06514 are separated by 122 nucleotides MPMX19_06512: MPMX19_06512 - Dimethyl sulfoxide/trimethylamine N-oxide reductase, at 296,271 to 298,571 _06512 MPMX19_06513: MPMX19_06513 - putative N-succinyldiaminopimelate aminotransferase DapC, at 298,581 to 299,747 _06513 MPMX19_06514: MPMX19_06514 - L-methionine gamma-lyase, at 299,870 to 301,123 _06514 Position (kb) 298 299 300Strain fitness (log2 ratio) -3 -2 -1 0 1at 297.855 kb on + strand, within MPMX19_06512at 297.855 kb on + strand, within MPMX19_06512at 298.173 kb on + strand, within MPMX19_06512at 298.173 kb on + strand, within MPMX19_06512at 298.173 kb on + strand, within MPMX19_06512at 298.374 kb on + strandat 298.374 kb on + strandat 298.374 kb on + strandat 298.375 kb on - strandat 298.375 kb on - strandat 298.375 kb on - strandat 298.375 kb on - strandat 298.696 kb on + strandat 298.696 kb on + strandat 298.696 kb on + strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.697 kb on - strandat 298.807 kb on + strand, within MPMX19_06513at 298.807 kb on + strand, within MPMX19_06513at 298.807 kb on + strand, within MPMX19_06513at 298.807 kb on + strand, within MPMX19_06513at 298.807 kb on + strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.808 kb on - strand, within MPMX19_06513at 298.975 kb on + strand, within MPMX19_06513at 298.975 kb on + strand, within MPMX19_06513at 298.975 kb on + strand, within MPMX19_06513at 298.976 kb on - strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.027 kb on - strand, within MPMX19_06513at 299.027 kb on - strand, within MPMX19_06513at 299.110 kb on + strand, within MPMX19_06513at 299.110 kb on + strand, within MPMX19_06513at 299.110 kb on + strand, within MPMX19_06513at 299.111 kb on - strand, within MPMX19_06513at 299.152 kb on + strand, within MPMX19_06513at 299.152 kb on + strand, within MPMX19_06513at 299.152 kb on + strand, within MPMX19_06513at 299.152 kb on + strand, within MPMX19_06513at 299.153 kb on - strand, within MPMX19_06513at 299.153 kb on - strand, within MPMX19_06513at 299.153 kb on - strand, within MPMX19_06513at 299.153 kb on - strand, within MPMX19_06513at 299.221 kb on - strand, within MPMX19_06513at 299.384 kb on - strand, within MPMX19_06513at 299.384 kb on - strand, within MPMX19_06513at 299.392 kb on + strand, within MPMX19_06513at 299.393 kb on - strand, within MPMX19_06513at 299.689 kb on - strandat 299.993 kb on + strandat 299.993 kb on + strandat 299.993 kb on + strandat 299.993 kb on + strandat 299.993 kb on + strandat 299.994 kb on - strandat 299.994 kb on - strandat 299.994 kb on - strandat 299.994 kb on - strandat 299.994 kb on - strandat 299.994 kb on - strandat 299.994 kb on - strandat 300.050 kb on + strand, within MPMX19_06514at 300.050 kb on + strand, within MPMX19_06514at 300.050 kb on + strand, within MPMX19_06514at 300.050 kb on + strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.233 kb on + strand, within MPMX19_06514at 300.233 kb on + strand, within MPMX19_06514at 300.233 kb on + strand, within MPMX19_06514at 300.233 kb on + strand, within MPMX19_06514at 300.234 kb on - strand, within MPMX19_06514at 300.234 kb on - strand, within MPMX19_06514at 300.234 kb on - strand, within MPMX19_06514at 300.602 kb on + strand, within MPMX19_06514at 300.603 kb on - strand, within MPMX19_06514at 300.603 kb on - strand, within MPMX19_06514

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
297,855 + MPMX19_06512 0.69 -0.3
297,855 + MPMX19_06512 0.69 +0.1
298,173 + MPMX19_06512 0.83 -2.9
298,173 + MPMX19_06512 0.83 +0.1
298,173 + MPMX19_06512 0.83 +0.3
298,374 + -0.0
298,374 + +0.8
298,374 + +0.3
298,375 - -0.2
298,375 - -0.9
298,375 - -0.6
298,375 - +1.1
298,696 + +0.2
298,696 + -0.4
298,696 + +0.1
298,697 - -0.4
298,697 - -0.8
298,697 - -2.4
298,697 - -0.2
298,697 - +1.1
298,697 - -2.7
298,697 - -0.4
298,697 - +0.1
298,697 - -1.1
298,807 + MPMX19_06513 0.19 -1.3
298,807 + MPMX19_06513 0.19 -1.5
298,807 + MPMX19_06513 0.19 -1.4
298,807 + MPMX19_06513 0.19 -0.9
298,807 + MPMX19_06513 0.19 +0.3
298,808 - MPMX19_06513 0.19 +0.7
298,808 - MPMX19_06513 0.19 +1.1
298,808 - MPMX19_06513 0.19 -0.7
298,808 - MPMX19_06513 0.19 -0.2
298,808 - MPMX19_06513 0.19 +0.5
298,808 - MPMX19_06513 0.19 +0.1
298,808 - MPMX19_06513 0.19 +0.4
298,975 + MPMX19_06513 0.34 +1.1
298,975 + MPMX19_06513 0.34 +1.2
298,975 + MPMX19_06513 0.34 +0.7
298,976 - MPMX19_06513 0.34 -0.7
299,026 + MPMX19_06513 0.38 +1.0
299,026 + MPMX19_06513 0.38 +0.7
299,026 + MPMX19_06513 0.38 +0.7
299,026 + MPMX19_06513 0.38 -1.4
299,026 + MPMX19_06513 0.38 -0.6
299,027 - MPMX19_06513 0.38 +1.3
299,027 - MPMX19_06513 0.38 +0.4
299,110 + MPMX19_06513 0.45 -1.1
299,110 + MPMX19_06513 0.45 +1.3
299,110 + MPMX19_06513 0.45 +0.2
299,111 - MPMX19_06513 0.45 -0.2
299,152 + MPMX19_06513 0.49 -0.0
299,152 + MPMX19_06513 0.49 +0.1
299,152 + MPMX19_06513 0.49 -0.3
299,152 + MPMX19_06513 0.49 +1.1
299,153 - MPMX19_06513 0.49 -0.7
299,153 - MPMX19_06513 0.49 -2.2
299,153 - MPMX19_06513 0.49 -0.2
299,153 - MPMX19_06513 0.49 -0.9
299,221 - MPMX19_06513 0.55 +0.3
299,384 - MPMX19_06513 0.69 +0.6
299,384 - MPMX19_06513 0.69 +0.6
299,392 + MPMX19_06513 0.69 +1.1
299,393 - MPMX19_06513 0.70 +0.6
299,689 - +0.2
299,993 + -0.1
299,993 + -1.9
299,993 + +0.2
299,993 + -0.8
299,993 + +1.7
299,994 - -0.5
299,994 - -0.9
299,994 - +0.1
299,994 - +0.0
299,994 - -1.0
299,994 - -0.3
299,994 - -0.3
300,050 + MPMX19_06514 0.14 -0.4
300,050 + MPMX19_06514 0.14 +0.0
300,050 + MPMX19_06514 0.14 +0.0
300,050 + MPMX19_06514 0.14 -0.4
300,051 - MPMX19_06514 0.14 -0.3
300,051 - MPMX19_06514 0.14 -0.5
300,051 - MPMX19_06514 0.14 -0.4
300,051 - MPMX19_06514 0.14 +0.4
300,051 - MPMX19_06514 0.14 +0.9
300,051 - MPMX19_06514 0.14 -0.1
300,051 - MPMX19_06514 0.14 -1.2
300,051 - MPMX19_06514 0.14 +0.3
300,051 - MPMX19_06514 0.14 -0.1
300,051 - MPMX19_06514 0.14 +0.6
300,051 - MPMX19_06514 0.14 +0.7
300,056 + MPMX19_06514 0.15 -0.4
300,056 + MPMX19_06514 0.15 -2.1
300,056 + MPMX19_06514 0.15 +0.1
300,056 + MPMX19_06514 0.15 -1.6
300,056 + MPMX19_06514 0.15 +1.1
300,056 + MPMX19_06514 0.15 +0.6
300,056 + MPMX19_06514 0.15 +0.1
300,056 + MPMX19_06514 0.15 -0.5
300,056 + MPMX19_06514 0.15 -0.3
300,056 + MPMX19_06514 0.15 -0.9
300,057 - MPMX19_06514 0.15 +0.5
300,057 - MPMX19_06514 0.15 +1.3
300,057 - MPMX19_06514 0.15 +1.1
300,057 - MPMX19_06514 0.15 +0.7
300,057 - MPMX19_06514 0.15 +0.1
300,057 - MPMX19_06514 0.15 +1.7
300,057 - MPMX19_06514 0.15 +1.0
300,057 - MPMX19_06514 0.15 -0.4
300,233 + MPMX19_06514 0.29 -2.0
300,233 + MPMX19_06514 0.29 -0.5
300,233 + MPMX19_06514 0.29 -1.4
300,233 + MPMX19_06514 0.29 -1.4
300,234 - MPMX19_06514 0.29 -0.3
300,234 - MPMX19_06514 0.29 -1.9
300,234 - MPMX19_06514 0.29 -2.8
300,602 + MPMX19_06514 0.58 +0.4
300,603 - MPMX19_06514 0.58 -0.0
300,603 - MPMX19_06514 0.58 -0.6

Or see this region's nucleotide sequence