Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06331 and MPMX19_06332 overlap by 4 nucleotides MPMX19_06332 and MPMX19_06333 overlap by 14 nucleotides
MPMX19_06331: MPMX19_06331 - hypothetical protein, at 98,178 to 99,077
_06331
MPMX19_06332: MPMX19_06332 - hypothetical protein, at 99,074 to 100,543
_06332
MPMX19_06333: MPMX19_06333 - Regulatory protein AtoC, at 100,530 to 101,867
_06333
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.103 kb on - strand at 98.373 kb on + strand, within MPMX19_06331 at 98.373 kb on + strand, within MPMX19_06331 at 98.374 kb on - strand, within MPMX19_06331 at 98.374 kb on - strand, within MPMX19_06331 at 98.424 kb on + strand, within MPMX19_06331 at 98.425 kb on - strand, within MPMX19_06331 at 98.425 kb on - strand, within MPMX19_06331 at 98.490 kb on + strand, within MPMX19_06331 at 98.490 kb on + strand, within MPMX19_06331 at 98.491 kb on - strand, within MPMX19_06331 at 98.491 kb on - strand, within MPMX19_06331 at 98.553 kb on + strand, within MPMX19_06331 at 98.553 kb on + strand, within MPMX19_06331 at 98.554 kb on - strand, within MPMX19_06331 at 98.554 kb on - strand, within MPMX19_06331 at 98.554 kb on - strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.730 kb on + strand, within MPMX19_06331 at 98.730 kb on + strand, within MPMX19_06331 at 98.730 kb on + strand, within MPMX19_06331 at 98.730 kb on + strand, within MPMX19_06331 at 98.731 kb on - strand, within MPMX19_06331 at 98.731 kb on - strand, within MPMX19_06331 at 98.731 kb on - strand, within MPMX19_06331 at 98.731 kb on - strand, within MPMX19_06331 at 98.731 kb on - strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.404 kb on + strand, within MPMX19_06332 at 99.404 kb on + strand, within MPMX19_06332 at 99.648 kb on - strand, within MPMX19_06332 at 99.743 kb on + strand, within MPMX19_06332 at 99.743 kb on + strand, within MPMX19_06332 at 99.744 kb on - strand, within MPMX19_06332 at 99.779 kb on + strand, within MPMX19_06332 at 99.780 kb on - strand, within MPMX19_06332 at 99.938 kb on - strand, within MPMX19_06332 at 100.046 kb on + strand, within MPMX19_06332 at 100.046 kb on + strand, within MPMX19_06332 at 100.046 kb on + strand, within MPMX19_06332 at 100.107 kb on + strand, within MPMX19_06332 at 100.107 kb on + strand, within MPMX19_06332 at 100.107 kb on + strand, within MPMX19_06332 at 100.107 kb on + strand, within MPMX19_06332 at 100.107 kb on + strand, within MPMX19_06332 at 100.107 kb on + strand, within MPMX19_06332 at 100.108 kb on - strand, within MPMX19_06332 at 100.108 kb on - strand, within MPMX19_06332 at 100.398 kb on + strand at 100.399 kb on - strand at 100.399 kb on - strand at 100.399 kb on - strand at 100.399 kb on - strand at 100.399 kb on - strand at 100.620 kb on + strand at 100.620 kb on + strand at 100.620 kb on + strand at 100.620 kb on + strand at 100.620 kb on + strand at 100.621 kb on - strand at 100.621 kb on - strand at 100.621 kb on - strand at 100.621 kb on - strand at 100.621 kb on - strand at 100.621 kb on - strand at 100.839 kb on + strand, within MPMX19_06333 at 100.839 kb on + strand, within MPMX19_06333 at 100.839 kb on + strand, within MPMX19_06333 at 100.839 kb on + strand, within MPMX19_06333 at 101.400 kb on + strand, within MPMX19_06333 at 101.400 kb on + strand, within MPMX19_06333 at 101.400 kb on + strand, within MPMX19_06333 at 101.400 kb on + strand, within MPMX19_06333 at 101.401 kb on - strand, within MPMX19_06333 at 101.401 kb on - strand, within MPMX19_06333 at 101.401 kb on - strand, within MPMX19_06333 at 101.401 kb on - strand, within MPMX19_06333 at 101.401 kb on - strand, within MPMX19_06333 at 101.481 kb on + strand, within MPMX19_06333 at 101.481 kb on + strand, within MPMX19_06333 at 101.481 kb on + strand, within MPMX19_06333 at 101.482 kb on - strand, within MPMX19_06333 at 101.482 kb on - strand, within MPMX19_06333 at 101.482 kb on - strand, within MPMX19_06333 at 101.482 kb on - strand, within MPMX19_06333 at 101.493 kb on + strand, within MPMX19_06333 at 101.493 kb on + strand, within MPMX19_06333
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 98,103 - -0.1 98,373 + MPMX19_06331 0.22 +0.7 98,373 + MPMX19_06331 0.22 -0.3 98,374 - MPMX19_06331 0.22 -0.1 98,374 - MPMX19_06331 0.22 -0.4 98,424 + MPMX19_06331 0.27 +1.0 98,425 - MPMX19_06331 0.27 -1.8 98,425 - MPMX19_06331 0.27 -0.3 98,490 + MPMX19_06331 0.35 +0.6 98,490 + MPMX19_06331 0.35 -0.7 98,491 - MPMX19_06331 0.35 +1.3 98,491 - MPMX19_06331 0.35 -0.0 98,553 + MPMX19_06331 0.42 +1.2 98,553 + MPMX19_06331 0.42 +0.2 98,554 - MPMX19_06331 0.42 -2.2 98,554 - MPMX19_06331 0.42 -2.2 98,554 - MPMX19_06331 0.42 -1.2 98,562 + MPMX19_06331 0.43 -0.6 98,562 + MPMX19_06331 0.43 -0.4 98,562 + MPMX19_06331 0.43 -2.0 98,562 + MPMX19_06331 0.43 -1.1 98,562 + MPMX19_06331 0.43 -1.0 98,562 + MPMX19_06331 0.43 +0.1 98,562 + MPMX19_06331 0.43 -1.7 98,562 + MPMX19_06331 0.43 -0.2 98,562 + MPMX19_06331 0.43 -1.0 98,562 + MPMX19_06331 0.43 +0.4 98,562 + MPMX19_06331 0.43 -0.7 98,562 + MPMX19_06331 0.43 -1.6 98,562 + MPMX19_06331 0.43 +0.1 98,562 + MPMX19_06331 0.43 -1.3 98,562 + MPMX19_06331 0.43 -0.1 98,562 + MPMX19_06331 0.43 +0.1 98,562 + MPMX19_06331 0.43 +0.1 98,562 + MPMX19_06331 0.43 +0.3 98,563 - MPMX19_06331 0.43 -0.3 98,563 - MPMX19_06331 0.43 +0.3 98,563 - MPMX19_06331 0.43 -0.2 98,563 - MPMX19_06331 0.43 +0.6 98,563 - MPMX19_06331 0.43 -0.3 98,563 - MPMX19_06331 0.43 +0.2 98,563 - MPMX19_06331 0.43 +0.1 98,563 - MPMX19_06331 0.43 +0.7 98,563 - MPMX19_06331 0.43 -1.5 98,563 - MPMX19_06331 0.43 +0.5 98,563 - MPMX19_06331 0.43 +0.3 98,563 - MPMX19_06331 0.43 +0.4 98,563 - MPMX19_06331 0.43 -1.9 98,563 - MPMX19_06331 0.43 -0.2 98,563 - MPMX19_06331 0.43 +0.9 98,563 - MPMX19_06331 0.43 -1.7 98,563 - MPMX19_06331 0.43 +0.7 98,563 - MPMX19_06331 0.43 +0.2 98,563 - MPMX19_06331 0.43 +0.1 98,563 - MPMX19_06331 0.43 -0.9 98,563 - MPMX19_06331 0.43 +0.1 98,563 - MPMX19_06331 0.43 +0.6 98,730 + MPMX19_06331 0.61 +1.7 98,730 + MPMX19_06331 0.61 -0.6 98,730 + MPMX19_06331 0.61 +0.2 98,730 + MPMX19_06331 0.61 -0.1 98,731 - MPMX19_06331 0.61 +1.0 98,731 - MPMX19_06331 0.61 -1.3 98,731 - MPMX19_06331 0.61 -0.6 98,731 - MPMX19_06331 0.61 -1.9 98,731 - MPMX19_06331 0.61 -0.9 98,796 + MPMX19_06331 0.69 -0.6 98,796 + MPMX19_06331 0.69 -0.4 98,796 + MPMX19_06331 0.69 -1.6 98,796 + MPMX19_06331 0.69 +0.1 98,796 + MPMX19_06331 0.69 +0.5 98,796 + MPMX19_06331 0.69 -0.4 98,796 + MPMX19_06331 0.69 -0.3 98,796 + MPMX19_06331 0.69 -0.3 98,797 - MPMX19_06331 0.69 +0.3 98,797 - MPMX19_06331 0.69 -0.9 98,797 - MPMX19_06331 0.69 +0.2 98,797 - MPMX19_06331 0.69 -0.5 98,797 - MPMX19_06331 0.69 -0.2 98,797 - MPMX19_06331 0.69 +0.7 98,797 - MPMX19_06331 0.69 -1.3 98,797 - MPMX19_06331 0.69 -0.0 98,797 - MPMX19_06331 0.69 +0.1 99,170 + -1.3 99,170 + +0.1 99,170 + -0.7 99,170 + -0.8 99,170 + -0.2 99,170 + -1.1 99,170 + +0.1 99,170 + -0.3 99,171 - -0.2 99,171 - -1.9 99,171 - -0.9 99,171 - +0.1 99,171 - -0.3 99,171 - -0.9 99,171 - -2.1 99,171 - -1.1 99,404 + MPMX19_06332 0.22 +0.1 99,404 + MPMX19_06332 0.22 +0.5 99,648 - MPMX19_06332 0.39 +0.1 99,743 + MPMX19_06332 0.46 -0.8 99,743 + MPMX19_06332 0.46 +1.7 99,744 - MPMX19_06332 0.46 -1.4 99,779 + MPMX19_06332 0.48 -0.7 99,780 - MPMX19_06332 0.48 -1.0 99,938 - MPMX19_06332 0.59 -0.1 100,046 + MPMX19_06332 0.66 -1.1 100,046 + MPMX19_06332 0.66 -1.0 100,046 + MPMX19_06332 0.66 +0.7 100,107 + MPMX19_06332 0.70 -0.4 100,107 + MPMX19_06332 0.70 -2.0 100,107 + MPMX19_06332 0.70 +1.5 100,107 + MPMX19_06332 0.70 -1.3 100,107 + MPMX19_06332 0.70 -1.5 100,107 + MPMX19_06332 0.70 -0.4 100,108 - MPMX19_06332 0.70 -2.7 100,108 - MPMX19_06332 0.70 -2.5 100,398 + -1.1 100,399 - +0.3 100,399 - -0.0 100,399 - -1.3 100,399 - +1.9 100,399 - +0.1 100,620 + -0.3 100,620 + +0.4 100,620 + +0.5 100,620 + -0.5 100,620 + -1.3 100,621 - +0.7 100,621 - +1.0 100,621 - -2.0 100,621 - +0.0 100,621 - -0.0 100,621 - +0.1 100,839 + MPMX19_06333 0.23 +1.7 100,839 + MPMX19_06333 0.23 +0.5 100,839 + MPMX19_06333 0.23 +0.0 100,839 + MPMX19_06333 0.23 +0.2 101,400 + MPMX19_06333 0.65 -1.4 101,400 + MPMX19_06333 0.65 +0.9 101,400 + MPMX19_06333 0.65 -1.6 101,400 + MPMX19_06333 0.65 +0.9 101,401 - MPMX19_06333 0.65 -1.3 101,401 - MPMX19_06333 0.65 +1.0 101,401 - MPMX19_06333 0.65 -1.6 101,401 - MPMX19_06333 0.65 +0.8 101,401 - MPMX19_06333 0.65 +0.1 101,481 + MPMX19_06333 0.71 -0.3 101,481 + MPMX19_06333 0.71 -0.5 101,481 + MPMX19_06333 0.71 -0.0 101,482 - MPMX19_06333 0.71 -1.1 101,482 - MPMX19_06333 0.71 +0.4 101,482 - MPMX19_06333 0.71 -1.1 101,482 - MPMX19_06333 0.71 -0.3 101,493 + MPMX19_06333 0.72 -1.1 101,493 + MPMX19_06333 0.72 +1.3
Or see this region's nucleotide sequence