Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06082

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06081 and MPMX19_06082 are separated by 279 nucleotidesMPMX19_06082 and MPMX19_06083 are separated by 11 nucleotidesMPMX19_06083 and MPMX19_06084 are separated by 73 nucleotides MPMX19_06081: MPMX19_06081 - Sensor histidine kinase RcsC, at 254,144 to 257,650 _06081 MPMX19_06082: MPMX19_06082 - Molybdenum storage protein subunit beta, at 257,930 to 258,769 _06082 MPMX19_06083: MPMX19_06083 - Molybdenum storage protein subunit alpha, at 258,781 to 259,614 _06083 MPMX19_06084: MPMX19_06084 - Transcriptional regulatory protein LnrK, at 259,688 to 260,338 _06084 Position (kb) 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1at 257.202 kb on + strand, within MPMX19_06081at 257.426 kb on + strandat 257.426 kb on + strandat 257.426 kb on + strandat 257.427 kb on - strandat 257.427 kb on - strandat 257.573 kb on + strandat 257.573 kb on + strandat 257.573 kb on + strandat 257.573 kb on + strandat 257.574 kb on - strandat 257.574 kb on - strandat 257.574 kb on - strandat 257.574 kb on - strandat 257.574 kb on - strandat 257.574 kb on - strandat 257.574 kb on - strandat 257.574 kb on - strandat 257.574 kb on - strandat 257.574 kb on - strandat 257.711 kb on - strandat 257.711 kb on - strandat 257.711 kb on - strandat 257.711 kb on - strandat 257.780 kb on - strandat 257.780 kb on - strandat 257.780 kb on - strandat 257.780 kb on - strandat 257.804 kb on + strandat 257.805 kb on - strandat 257.891 kb on + strandat 257.891 kb on + strandat 257.891 kb on + strandat 257.891 kb on + strandat 257.891 kb on + strandat 257.891 kb on + strandat 257.892 kb on - strandat 257.892 kb on - strandat 257.892 kb on - strandat 257.892 kb on - strandat 257.892 kb on - strandat 257.892 kb on - strandat 257.892 kb on - strandat 258.125 kb on + strand, within MPMX19_06082at 258.126 kb on - strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.212 kb on + strand, within MPMX19_06082at 258.213 kb on - strand, within MPMX19_06082at 258.213 kb on - strand, within MPMX19_06082at 258.213 kb on - strand, within MPMX19_06082at 258.213 kb on - strand, within MPMX19_06082at 258.213 kb on - strand, within MPMX19_06082at 258.213 kb on - strand, within MPMX19_06082at 258.365 kb on + strand, within MPMX19_06082at 258.365 kb on + strand, within MPMX19_06082at 258.366 kb on - strand, within MPMX19_06082at 258.366 kb on - strand, within MPMX19_06082at 258.366 kb on - strand, within MPMX19_06082at 258.366 kb on - strand, within MPMX19_06082at 258.366 kb on - strand, within MPMX19_06082at 258.410 kb on + strand, within MPMX19_06082at 258.411 kb on - strand, within MPMX19_06082at 258.411 kb on - strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.515 kb on + strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.516 kb on - strand, within MPMX19_06082at 258.539 kb on + strand, within MPMX19_06082at 258.539 kb on + strand, within MPMX19_06082at 258.539 kb on + strand, within MPMX19_06082at 258.539 kb on + strand, within MPMX19_06082at 258.539 kb on + strand, within MPMX19_06082at 258.540 kb on - strand, within MPMX19_06082at 258.540 kb on - strand, within MPMX19_06082at 258.540 kb on - strand, within MPMX19_06082at 258.540 kb on - strand, within MPMX19_06082at 258.540 kb on - strand, within MPMX19_06082at 258.540 kb on - strand, within MPMX19_06082at 259.045 kb on + strand, within MPMX19_06083at 259.045 kb on + strand, within MPMX19_06083at 259.045 kb on + strand, within MPMX19_06083at 259.045 kb on + strand, within MPMX19_06083at 259.046 kb on - strand, within MPMX19_06083at 259.046 kb on - strand, within MPMX19_06083at 259.125 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.162 kb on + strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.163 kb on - strand, within MPMX19_06083at 259.246 kb on + strand, within MPMX19_06083at 259.246 kb on + strand, within MPMX19_06083at 259.247 kb on - strand, within MPMX19_06083at 259.247 kb on - strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.369 kb on + strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.370 kb on - strand, within MPMX19_06083at 259.660 kb on + strandat 259.689 kb on + strandat 259.689 kb on + strandat 259.689 kb on + strandat 259.689 kb on + strandat 259.690 kb on - strandat 259.690 kb on - strandat 259.690 kb on - strandat 259.690 kb on - strandat 259.710 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
257,202 + MPMX19_06081 0.87 -1.3
257,426 + +0.9
257,426 + -1.3
257,426 + +0.0
257,427 - -0.3
257,427 - -1.6
257,573 + +0.4
257,573 + -1.8
257,573 + +0.1
257,573 + -1.0
257,574 - -0.1
257,574 - -0.4
257,574 - +1.0
257,574 - -0.8
257,574 - +0.9
257,574 - -0.6
257,574 - -1.1
257,574 - -0.3
257,574 - -0.1
257,574 - -0.6
257,711 - -1.3
257,711 - -0.3
257,711 - -1.1
257,711 - -0.8
257,780 - +0.4
257,780 - +0.1
257,780 - +0.1
257,780 - -0.9
257,804 + -1.0
257,805 - -1.6
257,891 + -1.3
257,891 + -1.3
257,891 + -0.0
257,891 + -1.3
257,891 + +0.1
257,891 + -0.5
257,892 - -0.1
257,892 - -1.2
257,892 - +0.5
257,892 - -0.9
257,892 - -0.3
257,892 - -0.3
257,892 - +0.5
258,125 + MPMX19_06082 0.23 -0.6
258,126 - MPMX19_06082 0.23 -0.9
258,212 + MPMX19_06082 0.34 -1.3
258,212 + MPMX19_06082 0.34 -1.3
258,212 + MPMX19_06082 0.34 +0.1
258,212 + MPMX19_06082 0.34 -1.9
258,212 + MPMX19_06082 0.34 -0.9
258,212 + MPMX19_06082 0.34 -1.3
258,212 + MPMX19_06082 0.34 +1.7
258,213 - MPMX19_06082 0.34 +0.7
258,213 - MPMX19_06082 0.34 -0.0
258,213 - MPMX19_06082 0.34 -1.5
258,213 - MPMX19_06082 0.34 -0.3
258,213 - MPMX19_06082 0.34 -0.7
258,213 - MPMX19_06082 0.34 -0.0
258,365 + MPMX19_06082 0.52 -0.4
258,365 + MPMX19_06082 0.52 -1.5
258,366 - MPMX19_06082 0.52 +0.5
258,366 - MPMX19_06082 0.52 -1.1
258,366 - MPMX19_06082 0.52 +1.1
258,366 - MPMX19_06082 0.52 -2.2
258,366 - MPMX19_06082 0.52 -0.5
258,410 + MPMX19_06082 0.57 -0.9
258,411 - MPMX19_06082 0.57 +0.0
258,411 - MPMX19_06082 0.57 +0.0
258,515 + MPMX19_06082 0.70 +0.4
258,515 + MPMX19_06082 0.70 -0.5
258,515 + MPMX19_06082 0.70 -0.7
258,515 + MPMX19_06082 0.70 -0.6
258,515 + MPMX19_06082 0.70 -0.3
258,515 + MPMX19_06082 0.70 +0.2
258,515 + MPMX19_06082 0.70 -0.1
258,515 + MPMX19_06082 0.70 -0.7
258,515 + MPMX19_06082 0.70 +0.7
258,515 + MPMX19_06082 0.70 -1.8
258,515 + MPMX19_06082 0.70 -2.0
258,515 + MPMX19_06082 0.70 -0.8
258,516 - MPMX19_06082 0.70 -0.2
258,516 - MPMX19_06082 0.70 -0.3
258,516 - MPMX19_06082 0.70 -0.5
258,516 - MPMX19_06082 0.70 -1.2
258,516 - MPMX19_06082 0.70 +0.5
258,516 - MPMX19_06082 0.70 -0.6
258,516 - MPMX19_06082 0.70 -0.1
258,516 - MPMX19_06082 0.70 -0.6
258,516 - MPMX19_06082 0.70 -0.3
258,516 - MPMX19_06082 0.70 -1.1
258,516 - MPMX19_06082 0.70 -0.3
258,516 - MPMX19_06082 0.70 -1.1
258,516 - MPMX19_06082 0.70 -0.8
258,516 - MPMX19_06082 0.70 -0.6
258,516 - MPMX19_06082 0.70 +1.3
258,516 - MPMX19_06082 0.70 +0.7
258,516 - MPMX19_06082 0.70 -0.9
258,516 - MPMX19_06082 0.70 +0.3
258,539 + MPMX19_06082 0.72 -0.8
258,539 + MPMX19_06082 0.72 -0.1
258,539 + MPMX19_06082 0.72 -0.6
258,539 + MPMX19_06082 0.72 -0.5
258,539 + MPMX19_06082 0.72 -0.1
258,540 - MPMX19_06082 0.73 -0.1
258,540 - MPMX19_06082 0.73 -0.6
258,540 - MPMX19_06082 0.73 -1.3
258,540 - MPMX19_06082 0.73 -0.4
258,540 - MPMX19_06082 0.73 -0.3
258,540 - MPMX19_06082 0.73 -0.6
259,045 + MPMX19_06083 0.32 -1.0
259,045 + MPMX19_06083 0.32 -0.7
259,045 + MPMX19_06083 0.32 +0.4
259,045 + MPMX19_06083 0.32 -2.3
259,046 - MPMX19_06083 0.32 -0.8
259,046 - MPMX19_06083 0.32 -1.4
259,125 + MPMX19_06083 0.41 -0.2
259,162 + MPMX19_06083 0.46 +0.1
259,162 + MPMX19_06083 0.46 +0.2
259,162 + MPMX19_06083 0.46 -0.4
259,162 + MPMX19_06083 0.46 -0.3
259,162 + MPMX19_06083 0.46 -0.3
259,162 + MPMX19_06083 0.46 -2.4
259,162 + MPMX19_06083 0.46 +0.3
259,162 + MPMX19_06083 0.46 -0.9
259,162 + MPMX19_06083 0.46 -0.3
259,162 + MPMX19_06083 0.46 -0.9
259,162 + MPMX19_06083 0.46 -2.0
259,162 + MPMX19_06083 0.46 +1.7
259,162 + MPMX19_06083 0.46 -0.3
259,162 + MPMX19_06083 0.46 -0.8
259,162 + MPMX19_06083 0.46 -0.0
259,162 + MPMX19_06083 0.46 -0.7
259,162 + MPMX19_06083 0.46 +0.3
259,163 - MPMX19_06083 0.46 -0.9
259,163 - MPMX19_06083 0.46 -2.0
259,163 - MPMX19_06083 0.46 -0.9
259,163 - MPMX19_06083 0.46 +0.9
259,163 - MPMX19_06083 0.46 +1.0
259,163 - MPMX19_06083 0.46 -1.0
259,163 - MPMX19_06083 0.46 -1.5
259,163 - MPMX19_06083 0.46 -1.5
259,163 - MPMX19_06083 0.46 -0.2
259,163 - MPMX19_06083 0.46 +0.3
259,163 - MPMX19_06083 0.46 -0.5
259,163 - MPMX19_06083 0.46 +1.1
259,163 - MPMX19_06083 0.46 -0.8
259,163 - MPMX19_06083 0.46 -1.8
259,163 - MPMX19_06083 0.46 -0.7
259,163 - MPMX19_06083 0.46 +0.8
259,163 - MPMX19_06083 0.46 +1.7
259,163 - MPMX19_06083 0.46 +0.7
259,246 + MPMX19_06083 0.56 -0.6
259,246 + MPMX19_06083 0.56 -0.9
259,247 - MPMX19_06083 0.56 +1.1
259,247 - MPMX19_06083 0.56 -0.9
259,369 + MPMX19_06083 0.71 -0.6
259,369 + MPMX19_06083 0.71 -0.8
259,369 + MPMX19_06083 0.71 +0.0
259,369 + MPMX19_06083 0.71 +1.1
259,369 + MPMX19_06083 0.71 -0.3
259,369 + MPMX19_06083 0.71 -1.3
259,369 + MPMX19_06083 0.71 -1.2
259,369 + MPMX19_06083 0.71 -0.2
259,369 + MPMX19_06083 0.71 -3.2
259,369 + MPMX19_06083 0.71 -1.9
259,369 + MPMX19_06083 0.71 -0.0
259,369 + MPMX19_06083 0.71 +0.7
259,369 + MPMX19_06083 0.71 +0.5
259,369 + MPMX19_06083 0.71 +0.1
259,370 - MPMX19_06083 0.71 -1.2
259,370 - MPMX19_06083 0.71 -1.3
259,370 - MPMX19_06083 0.71 -0.3
259,370 - MPMX19_06083 0.71 -2.5
259,370 - MPMX19_06083 0.71 -1.0
259,370 - MPMX19_06083 0.71 -0.7
259,370 - MPMX19_06083 0.71 -0.3
259,370 - MPMX19_06083 0.71 -0.6
259,370 - MPMX19_06083 0.71 -0.0
259,660 + -1.3
259,689 + -1.9
259,689 + -0.3
259,689 + -1.9
259,689 + -0.3
259,690 - -0.5
259,690 - -0.1
259,690 - -1.1
259,690 - -1.3
259,710 - -0.5

Or see this region's nucleotide sequence