Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05971

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM; high oxygen
				remove
121,701	+			-0.7
121,701	+			+0.4
121,747	+			-0.6
121,748	-			+0.0
121,748	-			-1.5
121,748	-			-0.6
121,841	+	MPMX19_05970	0.11	-0.6
121,841	+	MPMX19_05970	0.11	-0.3
121,841	+	MPMX19_05970	0.11	-0.3
121,842	-	MPMX19_05970	0.11	-1.1
121,842	-	MPMX19_05970	0.11	-1.5
121,842	-	MPMX19_05970	0.11	-0.3
121,842	-	MPMX19_05970	0.11	-2.2
121,842	-	MPMX19_05970	0.11	-0.6
121,955	+	MPMX19_05970	0.24	-2.3
121,956	-	MPMX19_05970	0.24	-1.1
121,956	-	MPMX19_05970	0.24	+0.5
122,032	+	MPMX19_05970	0.33	-1.1
122,033	-	MPMX19_05970	0.33	-1.1
122,033	-	MPMX19_05970	0.33	+0.5
122,033	-	MPMX19_05970	0.33	-1.6
122,168	+	MPMX19_05970	0.49	-0.1
122,168	+	MPMX19_05970	0.49	+1.7
122,168	+	MPMX19_05970	0.49	+0.3
122,168	+	MPMX19_05970	0.49	-0.4
122,169	-	MPMX19_05970	0.49	-0.4
122,174	+	MPMX19_05970	0.49	-1.3
122,174	+	MPMX19_05970	0.49	+0.0
122,174	+	MPMX19_05970	0.49	-0.5
122,174	+	MPMX19_05970	0.49	-0.7
122,174	+	MPMX19_05970	0.49	-0.1
122,174	+	MPMX19_05970	0.49	+0.1
122,174	+	MPMX19_05970	0.49	+0.0
122,174	+	MPMX19_05970	0.49	-2.8
122,174	+	MPMX19_05970	0.49	-2.5
122,174	+	MPMX19_05970	0.49	-0.2
122,174	+	MPMX19_05970	0.49	-0.8
122,174	+	MPMX19_05970	0.49	-1.5
122,174	+	MPMX19_05970	0.49	-2.5
122,174	+	MPMX19_05970	0.49	-0.2
122,175	-	MPMX19_05970	0.49	-0.2
122,175	-	MPMX19_05970	0.49	-1.1
122,175	-	MPMX19_05970	0.49	-1.6
122,175	-	MPMX19_05970	0.49	-1.4
122,175	-	MPMX19_05970	0.49	-2.7
122,175	-	MPMX19_05970	0.49	-0.2
122,175	-	MPMX19_05970	0.49	-0.6
122,175	-	MPMX19_05970	0.49	-0.6
122,258	+	MPMX19_05970	0.59	+0.4
122,259	-	MPMX19_05970	0.59	-2.2
122,291	+	MPMX19_05970	0.63	+0.4
122,291	+	MPMX19_05970	0.63	-0.5
122,291	+	MPMX19_05970	0.63	-1.6
122,292	-	MPMX19_05970	0.63	-0.1
122,292	-	MPMX19_05970	0.63	-0.7
122,292	-	MPMX19_05970	0.63	-0.9
122,292	-	MPMX19_05970	0.63	+0.6
122,292	-	MPMX19_05970	0.63	-0.0
122,292	-	MPMX19_05970	0.63	-0.5
122,292	-	MPMX19_05970	0.63	-0.6
122,339	+	MPMX19_05970	0.68	+0.5
122,339	+	MPMX19_05970	0.68	-2.1
122,339	+	MPMX19_05970	0.68	-1.4
122,340	-	MPMX19_05970	0.68	+0.7
122,340	-	MPMX19_05970	0.68	-1.0
122,340	-	MPMX19_05970	0.68	+0.3
122,414	+	MPMX19_05970	0.77	-0.1
122,414	+	MPMX19_05970	0.77	+0.2
122,414	+	MPMX19_05970	0.77	+0.1
122,414	+	MPMX19_05970	0.77	-1.5
122,414	+	MPMX19_05970	0.77	+0.2
122,414	+	MPMX19_05970	0.77	+0.1
122,415	-	MPMX19_05970	0.77	-1.3
122,415	-	MPMX19_05970	0.77	-0.3
122,415	-	MPMX19_05970	0.77	+0.1
122,415	-	MPMX19_05970	0.77	-0.1
122,477	+	MPMX19_05970	0.84	+1.0
122,478	-	MPMX19_05970	0.84	+0.6
122,478	-	MPMX19_05970	0.84	-1.0
122,540	+			-1.9
122,540	+			-0.9
122,540	+			-1.2
122,541	-			+0.5
122,541	-			-1.9
122,541	-			-1.3
122,541	-			-0.6
122,541	-			-0.3
122,541	-			+0.4
122,576	+			-0.0
122,576	+			-1.6
122,576	+			-0.5
122,577	-			-0.7
122,577	-			-1.5
122,577	-			-0.6
122,577	-			-0.3
122,577	-			-0.5
122,577	-			-1.7
122,577	-			-1.5
122,577	-			-0.9
122,577	-			-0.4
122,716	+	MPMX19_05971	0.12	-0.2
122,717	-	MPMX19_05971	0.12	-1.6
122,717	-	MPMX19_05971	0.12	+0.5
122,717	-	MPMX19_05971	0.12	-2.5
122,717	-	MPMX19_05971	0.12	-1.2
122,717	-	MPMX19_05971	0.12	-1.5
122,717	-	MPMX19_05971	0.12	-1.7
122,717	-	MPMX19_05971	0.12	+0.1
122,720	+	MPMX19_05971	0.12	+0.3
122,720	+	MPMX19_05971	0.12	-1.3
122,721	-	MPMX19_05971	0.12	+0.3
122,743	+	MPMX19_05971	0.15	-2.1
122,743	+	MPMX19_05971	0.15	-1.0
122,743	+	MPMX19_05971	0.15	-0.3
122,744	-	MPMX19_05971	0.15	-1.0
122,744	-	MPMX19_05971	0.15	-0.0
122,744	-	MPMX19_05971	0.15	+0.6
122,744	-	MPMX19_05971	0.15	-1.3
122,804	-	MPMX19_05971	0.22	+1.5
122,830	+	MPMX19_05971	0.25	-1.1
122,830	+	MPMX19_05971	0.25	-0.3
122,830	+	MPMX19_05971	0.25	+0.1
122,830	+	MPMX19_05971	0.25	-0.3
122,831	-	MPMX19_05971	0.25	-2.3
122,831	-	MPMX19_05971	0.25	+0.4
122,831	-	MPMX19_05971	0.25	-1.9
122,831	-	MPMX19_05971	0.25	+0.0
122,861	-	MPMX19_05971	0.28	+0.5
122,861	-	MPMX19_05971	0.28	-1.3
122,869	+	MPMX19_05971	0.29	-1.3
122,869	+	MPMX19_05971	0.29	-1.2
122,870	-	MPMX19_05971	0.29	-0.9
122,884	+	MPMX19_05971	0.31	-0.9
122,884	+	MPMX19_05971	0.31	-1.1
122,884	+	MPMX19_05971	0.31	-0.5
122,884	+	MPMX19_05971	0.31	-1.0
122,884	+	MPMX19_05971	0.31	-0.1
122,884	+	MPMX19_05971	0.31	-0.8
122,884	+	MPMX19_05971	0.31	-1.9
122,884	+	MPMX19_05971	0.31	+0.3
122,884	+	MPMX19_05971	0.31	-0.9
122,884	+	MPMX19_05971	0.31	-2.0
122,884	+	MPMX19_05971	0.31	+0.1
122,885	-	MPMX19_05971	0.31	-0.8
122,885	-	MPMX19_05971	0.31	+0.3
122,885	-	MPMX19_05971	0.31	-1.2
122,885	-	MPMX19_05971	0.31	-0.1
122,885	-	MPMX19_05971	0.31	-1.3
122,885	-	MPMX19_05971	0.31	-2.8
122,885	-	MPMX19_05971	0.31	-0.6
122,885	-	MPMX19_05971	0.31	+0.5
122,885	-	MPMX19_05971	0.31	-1.0
122,885	-	MPMX19_05971	0.31	+0.3
122,885	-	MPMX19_05971	0.31	+0.0
122,887	+	MPMX19_05971	0.31	+0.8
122,887	+	MPMX19_05971	0.31	+1.1
122,887	+	MPMX19_05971	0.31	-1.1
122,887	+	MPMX19_05971	0.31	-1.3
122,887	+	MPMX19_05971	0.31	+0.2
122,887	+	MPMX19_05971	0.31	-0.7
122,887	+	MPMX19_05971	0.31	-2.2
122,887	+	MPMX19_05971	0.31	+1.7
122,887	+	MPMX19_05971	0.31	-1.5
122,888	-	MPMX19_05971	0.31	+0.4
122,888	-	MPMX19_05971	0.31	+0.1
122,888	-	MPMX19_05971	0.31	-0.1
122,888	-	MPMX19_05971	0.31	-0.1
122,888	-	MPMX19_05971	0.31	-0.6
122,888	-	MPMX19_05971	0.31	+1.7
122,938	+	MPMX19_05971	0.37	-0.3
122,938	+	MPMX19_05971	0.37	-1.0
122,938	+	MPMX19_05971	0.37	+1.0
122,938	+	MPMX19_05971	0.37	-1.2
122,938	+	MPMX19_05971	0.37	-1.0
122,939	-	MPMX19_05971	0.37	+0.1
122,939	-	MPMX19_05971	0.37	-1.1
123,046	+	MPMX19_05971	0.50	-1.0
123,046	+	MPMX19_05971	0.50	-0.5
123,046	+	MPMX19_05971	0.50	+0.5
123,047	-	MPMX19_05971	0.50	-1.3
123,047	-	MPMX19_05971	0.50	-1.9
123,047	-	MPMX19_05971	0.50	-0.2
123,047	-	MPMX19_05971	0.50	-1.0
123,047	-	MPMX19_05971	0.50	-2.1
123,178	+	MPMX19_05971	0.65	+1.0
123,178	+	MPMX19_05971	0.65	-1.0
123,178	+	MPMX19_05971	0.65	-1.5
123,178	+	MPMX19_05971	0.65	-0.5
123,178	+	MPMX19_05971	0.65	-1.0
123,178	+	MPMX19_05971	0.65	-0.3
123,178	+	MPMX19_05971	0.65	-0.8
123,178	+	MPMX19_05971	0.65	-1.3
123,178	+	MPMX19_05971	0.65	-1.9
123,179	-	MPMX19_05971	0.65	-1.6
123,179	-	MPMX19_05971	0.65	+0.2
123,179	-	MPMX19_05971	0.65	-1.1
123,179	-	MPMX19_05971	0.65	-0.3
123,179	-	MPMX19_05971	0.65	-0.5
123,179	-	MPMX19_05971	0.65	-0.7
123,179	-	MPMX19_05971	0.65	-0.5
123,179	-	MPMX19_05971	0.65	+0.9
123,179	-	MPMX19_05971	0.65	-0.1
123,190	+	MPMX19_05971	0.66	-1.1
123,191	-	MPMX19_05971	0.66	-0.9
123,448	+			-1.0
123,448	+			-0.7
123,448	+			+0.3
123,448	+			+0.3
123,448	+			-0.0
123,448	+			-0.8
123,448	+			+1.1
123,448	+			+0.2
123,448	+			-1.0
123,448	+			+0.9
123,448	+			-2.3
123,449	-			+0.4
123,449	-			+0.1
123,449	-			-0.5
123,449	-			-1.5
123,449	-			-0.7
123,449	-			+0.3
123,449	-			-0.4
123,449	-			+0.3
123,449	-			+1.3
123,449	-			-0.1
123,449	-			+1.1
123,449	-			-1.6
123,449	-			-0.3
123,449	-			+0.0
123,502	+			-0.1
123,503	-			+0.1
123,867	+			+0.5
123,867	+			+0.7
123,867	+			+0.2
123,867	+			-0.3
123,867	+			+0.1
123,868	-			-1.6
123,868	-			+1.7
123,868	-			-1.3
123,868	-			+1.1
123,868	-			+1.0
123,868	-			-0.3
123,876	+			-0.6
123,876	+			-1.0
123,876	+			-0.5
123,877	-			+0.5
123,877	-			+1.1
124,152	+	MPMX19_05973	0.13	-0.9
124,152	+	MPMX19_05973	0.13	+0.1
124,152	+	MPMX19_05973	0.13	-0.1
124,152	+	MPMX19_05973	0.13	-1.5
124,152	+	MPMX19_05973	0.13	+0.7
124,152	+	MPMX19_05973	0.13	-1.1
124,152	+	MPMX19_05973	0.13	+0.9
124,152	+	MPMX19_05973	0.13	-1.4
124,153	-	MPMX19_05973	0.13	-1.1
124,153	-	MPMX19_05973	0.13	-0.1
124,153	-	MPMX19_05973	0.13	-1.5
124,153	-	MPMX19_05973	0.13	+0.5
124,153	-	MPMX19_05973	0.13	+0.1
124,329	+	MPMX19_05973	0.23	-0.4
124,329	+	MPMX19_05973	0.23	-0.1
124,329	+	MPMX19_05973	0.23	+0.7
124,330	-	MPMX19_05973	0.23	+0.1
124,330	-	MPMX19_05973	0.23	+0.6
124,330	-	MPMX19_05973	0.23	-1.5
124,330	-	MPMX19_05973	0.23	-0.1
124,330	-	MPMX19_05973	0.23	+0.1
124,330	-	MPMX19_05973	0.23	+1.5
124,330	-	MPMX19_05973	0.23	-0.1
124,338	+	MPMX19_05973	0.23	-1.0
124,338	+	MPMX19_05973	0.23	+1.0
124,338	+	MPMX19_05973	0.23	-0.8
124,339	-	MPMX19_05973	0.24	+1.0
124,339	-	MPMX19_05973	0.24	-1.2
124,339	-	MPMX19_05973	0.24	-0.7
124,339	-	MPMX19_05973	0.24	-1.1
124,339	-	MPMX19_05973	0.24	+0.9
124,339	-	MPMX19_05973	0.24	-0.1
124,339	-	MPMX19_05973	0.24	-0.6
124,339	-	MPMX19_05973	0.24	-1.5
124,339	-	MPMX19_05973	0.24	-1.0

Or see this region's nucleotide sequence