Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05932 and MPMX19_05933 are separated by 119 nucleotides MPMX19_05933 and MPMX19_05934 are separated by 41 nucleotides
MPMX19_05932: MPMX19_05932 - Bifunctional protein PutA, at 71,593 to 75,351
_05932
MPMX19_05933: MPMX19_05933 - hypothetical protein, at 75,471 to 76,337
_05933
MPMX19_05934: MPMX19_05934 - Arylesterase, at 76,379 to 77,206
_05934
Position (kb) 75
76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 74.560 kb on + strand, within MPMX19_05932 at 74.641 kb on + strand, within MPMX19_05932 at 74.641 kb on + strand, within MPMX19_05932 at 74.641 kb on + strand, within MPMX19_05932 at 74.641 kb on + strand, within MPMX19_05932 at 74.641 kb on + strand, within MPMX19_05932 at 74.641 kb on + strand, within MPMX19_05932 at 74.642 kb on - strand, within MPMX19_05932 at 74.642 kb on - strand, within MPMX19_05932 at 74.642 kb on - strand, within MPMX19_05932 at 74.642 kb on - strand, within MPMX19_05932 at 74.642 kb on - strand, within MPMX19_05932 at 74.642 kb on - strand, within MPMX19_05932 at 74.642 kb on - strand, within MPMX19_05932 at 74.678 kb on + strand, within MPMX19_05932 at 74.678 kb on + strand, within MPMX19_05932 at 74.679 kb on - strand, within MPMX19_05932 at 74.679 kb on - strand, within MPMX19_05932 at 74.737 kb on + strand, within MPMX19_05932 at 74.737 kb on + strand, within MPMX19_05932 at 74.737 kb on + strand, within MPMX19_05932 at 74.738 kb on - strand, within MPMX19_05932 at 74.738 kb on - strand, within MPMX19_05932 at 74.738 kb on - strand, within MPMX19_05932 at 74.738 kb on - strand, within MPMX19_05932 at 74.759 kb on + strand, within MPMX19_05932 at 74.759 kb on + strand, within MPMX19_05932 at 74.760 kb on - strand, within MPMX19_05932 at 74.760 kb on - strand, within MPMX19_05932 at 74.760 kb on - strand, within MPMX19_05932 at 74.801 kb on + strand, within MPMX19_05932 at 74.801 kb on + strand, within MPMX19_05932 at 74.801 kb on + strand, within MPMX19_05932 at 74.802 kb on - strand, within MPMX19_05932 at 74.802 kb on - strand, within MPMX19_05932 at 74.802 kb on - strand, within MPMX19_05932 at 74.944 kb on + strand, within MPMX19_05932 at 74.944 kb on + strand, within MPMX19_05932 at 74.945 kb on - strand, within MPMX19_05932 at 74.945 kb on - strand, within MPMX19_05932 at 74.945 kb on - strand, within MPMX19_05932 at 74.945 kb on - strand, within MPMX19_05932 at 74.945 kb on - strand, within MPMX19_05932 at 74.967 kb on + strand, within MPMX19_05932 at 74.968 kb on - strand, within MPMX19_05932 at 75.001 kb on + strand at 75.001 kb on + strand at 75.002 kb on - strand at 75.002 kb on - strand at 75.002 kb on - strand at 75.002 kb on - strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.403 kb on - strand at 75.403 kb on - strand at 75.403 kb on - strand at 75.403 kb on - strand at 75.403 kb on - strand at 75.403 kb on - strand at 75.403 kb on - strand at 75.430 kb on + strand at 75.431 kb on - strand at 75.473 kb on - strand at 75.725 kb on - strand, within MPMX19_05933 at 76.064 kb on - strand, within MPMX19_05933 at 76.076 kb on - strand, within MPMX19_05933 at 76.311 kb on - strand at 76.369 kb on - strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.875 kb on + strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.166 kb on + strand at 77.166 kb on + strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.285 kb on + strand at 77.285 kb on + strand at 77.285 kb on + strand at 77.285 kb on + strand at 77.286 kb on - strand at 77.286 kb on - strand at 77.286 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 74,560 + MPMX19_05932 0.79 +0.1 74,641 + MPMX19_05932 0.81 +1.3 74,641 + MPMX19_05932 0.81 +0.1 74,641 + MPMX19_05932 0.81 +0.7 74,641 + MPMX19_05932 0.81 +0.7 74,641 + MPMX19_05932 0.81 -1.5 74,641 + MPMX19_05932 0.81 -1.6 74,642 - MPMX19_05932 0.81 +2.1 74,642 - MPMX19_05932 0.81 -1.1 74,642 - MPMX19_05932 0.81 +0.1 74,642 - MPMX19_05932 0.81 +1.4 74,642 - MPMX19_05932 0.81 -1.5 74,642 - MPMX19_05932 0.81 -0.2 74,642 - MPMX19_05932 0.81 +1.1 74,678 + MPMX19_05932 0.82 -0.7 74,678 + MPMX19_05932 0.82 -0.5 74,679 - MPMX19_05932 0.82 +0.1 74,679 - MPMX19_05932 0.82 +0.7 74,737 + MPMX19_05932 0.84 +0.9 74,737 + MPMX19_05932 0.84 +0.7 74,737 + MPMX19_05932 0.84 +0.3 74,738 - MPMX19_05932 0.84 -0.6 74,738 - MPMX19_05932 0.84 -2.4 74,738 - MPMX19_05932 0.84 -1.5 74,738 - MPMX19_05932 0.84 -1.6 74,759 + MPMX19_05932 0.84 +1.1 74,759 + MPMX19_05932 0.84 +0.9 74,760 - MPMX19_05932 0.84 -0.9 74,760 - MPMX19_05932 0.84 +0.1 74,760 - MPMX19_05932 0.84 +0.3 74,801 + MPMX19_05932 0.85 -0.8 74,801 + MPMX19_05932 0.85 -0.5 74,801 + MPMX19_05932 0.85 +1.0 74,802 - MPMX19_05932 0.85 +0.7 74,802 - MPMX19_05932 0.85 +1.0 74,802 - MPMX19_05932 0.85 -2.2 74,944 + MPMX19_05932 0.89 -1.2 74,944 + MPMX19_05932 0.89 -0.0 74,945 - MPMX19_05932 0.89 -0.9 74,945 - MPMX19_05932 0.89 -2.0 74,945 - MPMX19_05932 0.89 +0.6 74,945 - MPMX19_05932 0.89 -0.7 74,945 - MPMX19_05932 0.89 -1.7 74,967 + MPMX19_05932 0.90 +0.3 74,968 - MPMX19_05932 0.90 -0.3 75,001 + -1.6 75,001 + +0.3 75,002 - +0.1 75,002 - -0.3 75,002 - -2.2 75,002 - -0.7 75,398 + +1.2 75,398 + +1.1 75,398 + +0.2 75,398 + +0.5 75,398 + -0.7 75,398 + -0.3 75,398 + -0.1 75,398 + +0.6 75,398 + +0.3 75,398 + -1.7 75,398 + -1.6 75,398 + +0.0 75,398 + +0.8 75,398 + +0.1 75,398 + -1.5 75,398 + +0.2 75,398 + -1.2 75,398 + -1.6 75,398 + +0.1 75,398 + -0.1 75,398 + -0.8 75,398 + -0.5 75,402 + +2.2 75,402 + +0.7 75,402 + -0.1 75,402 + -1.3 75,402 + -0.1 75,402 + -0.7 75,402 + -1.0 75,402 + -0.5 75,402 + -0.2 75,402 + +0.3 75,402 + +1.0 75,402 + -1.2 75,402 + -1.7 75,402 + -0.5 75,402 + -0.0 75,402 + +1.7 75,402 + +0.4 75,402 + -1.6 75,402 + -0.1 75,402 + -1.2 75,402 + -0.7 75,402 + +0.5 75,403 - -1.3 75,403 - -0.4 75,403 - +0.7 75,403 - +0.3 75,403 - +0.5 75,403 - -1.2 75,403 - -0.9 75,430 + -1.3 75,431 - -2.0 75,473 - -1.0 75,725 - MPMX19_05933 0.29 -0.2 76,064 - MPMX19_05933 0.68 -1.7 76,076 - MPMX19_05933 0.70 -0.9 76,311 - -0.7 76,369 - -1.0 76,458 + +0.0 76,458 + +0.4 76,458 + -1.0 76,458 + -0.3 76,458 + -1.3 76,458 + +0.6 76,458 + +0.2 76,458 + -0.6 76,458 + -0.9 76,458 + -0.9 76,459 - +0.1 76,459 - +0.1 76,459 - -0.7 76,459 - -3.1 76,459 - -0.3 76,459 - +0.1 76,459 - -0.6 76,459 - -0.5 76,875 + MPMX19_05934 0.60 +0.4 76,876 - MPMX19_05934 0.60 -0.2 76,876 - MPMX19_05934 0.60 -0.5 76,876 - MPMX19_05934 0.60 +0.5 76,876 - MPMX19_05934 0.60 -1.6 76,876 - MPMX19_05934 0.60 -0.9 76,876 - MPMX19_05934 0.60 -2.1 76,876 - MPMX19_05934 0.60 -0.9 77,074 - MPMX19_05934 0.84 -0.6 77,074 - MPMX19_05934 0.84 -0.1 77,074 - MPMX19_05934 0.84 -0.8 77,074 - MPMX19_05934 0.84 -0.5 77,166 + +0.0 77,166 + +0.1 77,167 - -0.5 77,167 - -2.1 77,167 - -1.6 77,167 - -0.1 77,167 - -0.9 77,167 - -0.0 77,285 + -0.6 77,285 + -0.4 77,285 + -0.3 77,285 + +1.0 77,286 - -0.6 77,286 - -0.1 77,286 - -2.5
Or see this region's nucleotide sequence