Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05290 and MPMX19_05291 are separated by 45 nucleotides MPMX19_05291 and MPMX19_05292 overlap by 8 nucleotides MPMX19_05292 and MPMX19_05293 overlap by 4 nucleotides MPMX19_05293 and MPMX19_05294 overlap by 4 nucleotides
MPMX19_05290: MPMX19_05290 - Hydrogenase transcriptional regulatory protein hupR1, at 825,538 to 827,025
_05290
MPMX19_05291: MPMX19_05291 - Hydrogenase maturation factor HybF, at 827,071 to 827,412
_05291
MPMX19_05292: MPMX19_05292 - hypothetical protein, at 827,405 to 828,241
_05292
MPMX19_05293: MPMX19_05293 - hypothetical protein, at 828,238 to 829,122
_05293
MPMX19_05294: MPMX19_05294 - hypothetical protein, at 829,119 to 829,547
_05294
Position (kb) 827
828
829 Strain fitness (log2 ratio) -2
-1
0
1
2 at 826.547 kb on + strand, within MPMX19_05290 at 826.769 kb on + strand, within MPMX19_05290 at 826.769 kb on + strand, within MPMX19_05290 at 826.770 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 826.832 kb on - strand, within MPMX19_05290 at 827.661 kb on + strand, within MPMX19_05292 at 827.661 kb on + strand, within MPMX19_05292 at 827.661 kb on + strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.662 kb on - strand, within MPMX19_05292 at 827.700 kb on + strand, within MPMX19_05292 at 828.141 kb on + strand, within MPMX19_05292 at 828.141 kb on + strand, within MPMX19_05292 at 828.141 kb on + strand, within MPMX19_05292 at 828.141 kb on + strand, within MPMX19_05292 at 828.141 kb on + strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.142 kb on - strand, within MPMX19_05292 at 828.207 kb on + strand at 828.207 kb on + strand at 828.207 kb on + strand at 828.207 kb on + strand at 828.207 kb on + strand at 828.208 kb on - strand at 828.208 kb on - strand at 828.208 kb on - strand at 828.208 kb on - strand at 828.208 kb on - strand at 828.390 kb on - strand, within MPMX19_05293 at 828.390 kb on - strand, within MPMX19_05293 at 828.390 kb on - strand, within MPMX19_05293 at 828.390 kb on - strand, within MPMX19_05293 at 828.390 kb on - strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.392 kb on + strand, within MPMX19_05293 at 828.393 kb on - strand, within MPMX19_05293 at 828.393 kb on - strand, within MPMX19_05293 at 829.007 kb on + strand, within MPMX19_05293 at 829.007 kb on + strand, within MPMX19_05293 at 829.008 kb on - strand, within MPMX19_05293 at 829.008 kb on - strand, within MPMX19_05293 at 829.037 kb on + strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.175 kb on - strand, within MPMX19_05294 at 829.175 kb on - strand, within MPMX19_05294 at 829.175 kb on - strand, within MPMX19_05294
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 826,547 + MPMX19_05290 0.68 +0.1 826,769 + MPMX19_05290 0.83 -0.7 826,769 + MPMX19_05290 0.83 +0.4 826,770 - MPMX19_05290 0.83 +0.4 826,832 - MPMX19_05290 0.87 +0.6 826,832 - MPMX19_05290 0.87 -0.3 826,832 - MPMX19_05290 0.87 +0.2 826,832 - MPMX19_05290 0.87 -0.6 826,832 - MPMX19_05290 0.87 +1.0 826,832 - MPMX19_05290 0.87 -0.7 826,832 - MPMX19_05290 0.87 +0.3 826,832 - MPMX19_05290 0.87 -2.7 827,661 + MPMX19_05292 0.31 -0.9 827,661 + MPMX19_05292 0.31 -0.7 827,661 + MPMX19_05292 0.31 -1.9 827,662 - MPMX19_05292 0.31 -0.9 827,662 - MPMX19_05292 0.31 -1.1 827,662 - MPMX19_05292 0.31 +0.6 827,662 - MPMX19_05292 0.31 +0.9 827,662 - MPMX19_05292 0.31 -0.9 827,662 - MPMX19_05292 0.31 +0.3 827,662 - MPMX19_05292 0.31 -0.0 827,662 - MPMX19_05292 0.31 -1.7 827,700 + MPMX19_05292 0.35 -1.0 828,141 + MPMX19_05292 0.88 -0.7 828,141 + MPMX19_05292 0.88 -1.0 828,141 + MPMX19_05292 0.88 -0.6 828,141 + MPMX19_05292 0.88 +0.6 828,141 + MPMX19_05292 0.88 -1.2 828,142 - MPMX19_05292 0.88 -1.6 828,142 - MPMX19_05292 0.88 -0.1 828,142 - MPMX19_05292 0.88 +0.7 828,142 - MPMX19_05292 0.88 +0.0 828,142 - MPMX19_05292 0.88 -1.5 828,142 - MPMX19_05292 0.88 -1.0 828,142 - MPMX19_05292 0.88 -1.2 828,142 - MPMX19_05292 0.88 -2.1 828,207 + -1.2 828,207 + -0.6 828,207 + -0.1 828,207 + +0.2 828,207 + +0.6 828,208 - +0.9 828,208 - +0.3 828,208 - +0.5 828,208 - +0.6 828,208 - -1.2 828,390 - MPMX19_05293 0.17 +0.6 828,390 - MPMX19_05293 0.17 -1.5 828,390 - MPMX19_05293 0.17 -1.3 828,390 - MPMX19_05293 0.17 -1.0 828,390 - MPMX19_05293 0.17 -0.4 828,392 + MPMX19_05293 0.17 -2.0 828,392 + MPMX19_05293 0.17 -2.4 828,392 + MPMX19_05293 0.17 +1.7 828,392 + MPMX19_05293 0.17 +0.6 828,392 + MPMX19_05293 0.17 -1.0 828,392 + MPMX19_05293 0.17 -1.7 828,392 + MPMX19_05293 0.17 +1.0 828,392 + MPMX19_05293 0.17 -0.5 828,392 + MPMX19_05293 0.17 +1.3 828,393 - MPMX19_05293 0.18 -0.2 828,393 - MPMX19_05293 0.18 -0.7 829,007 + MPMX19_05293 0.87 +0.3 829,007 + MPMX19_05293 0.87 -0.1 829,008 - MPMX19_05293 0.87 -2.1 829,008 - MPMX19_05293 0.87 -0.5 829,037 + -0.6 829,038 - +1.0 829,038 - +0.4 829,038 - -0.4 829,038 - -1.0 829,038 - -1.4 829,038 - +0.6 829,038 - +0.2 829,038 - -2.7 829,174 + MPMX19_05294 0.13 -1.6 829,174 + MPMX19_05294 0.13 -0.8 829,174 + MPMX19_05294 0.13 -0.0 829,174 + MPMX19_05294 0.13 -0.4 829,174 + MPMX19_05294 0.13 -0.3 829,175 - MPMX19_05294 0.13 +1.9 829,175 - MPMX19_05294 0.13 +0.0 829,175 - MPMX19_05294 0.13 -0.5
Or see this region's nucleotide sequence