Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05239

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05238 and MPMX19_05239 are separated by 46 nucleotidesMPMX19_05239 and MPMX19_05240 are separated by 380 nucleotides MPMX19_05238: MPMX19_05238 - Periplasmic dipeptide transport protein, at 766,339 to 767,961 _05238 MPMX19_05239: MPMX19_05239 - hypothetical protein, at 768,008 to 769,462 _05239 MPMX19_05240: MPMX19_05240 - L-threonine dehydratase catabolic TdcB, at 769,843 to 770,817 _05240 Position (kb) 768 769 770Strain fitness (log2 ratio) -3 -2 -1 0 1at 767.023 kb on + strand, within MPMX19_05238at 767.023 kb on + strand, within MPMX19_05238at 767.023 kb on + strand, within MPMX19_05238at 767.023 kb on + strand, within MPMX19_05238at 767.023 kb on + strand, within MPMX19_05238at 767.024 kb on - strand, within MPMX19_05238at 767.077 kb on + strand, within MPMX19_05238at 767.077 kb on + strand, within MPMX19_05238at 767.077 kb on + strand, within MPMX19_05238at 767.077 kb on + strand, within MPMX19_05238at 767.077 kb on + strand, within MPMX19_05238at 767.078 kb on - strand, within MPMX19_05238at 767.078 kb on - strand, within MPMX19_05238at 767.078 kb on - strand, within MPMX19_05238at 767.227 kb on + strand, within MPMX19_05238at 767.227 kb on + strand, within MPMX19_05238at 767.227 kb on + strand, within MPMX19_05238at 767.227 kb on + strand, within MPMX19_05238at 767.227 kb on + strand, within MPMX19_05238at 767.227 kb on + strand, within MPMX19_05238at 767.227 kb on + strand, within MPMX19_05238at 767.227 kb on + strand, within MPMX19_05238at 767.227 kb on + strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.228 kb on - strand, within MPMX19_05238at 767.229 kb on + strand, within MPMX19_05238at 767.229 kb on + strand, within MPMX19_05238at 767.229 kb on + strand, within MPMX19_05238at 767.229 kb on + strand, within MPMX19_05238at 767.229 kb on + strand, within MPMX19_05238at 767.229 kb on + strand, within MPMX19_05238at 767.229 kb on + strand, within MPMX19_05238at 767.229 kb on + strand, within MPMX19_05238at 767.230 kb on - strand, within MPMX19_05238at 767.230 kb on - strand, within MPMX19_05238at 767.230 kb on - strand, within MPMX19_05238at 767.230 kb on - strand, within MPMX19_05238at 767.230 kb on - strand, within MPMX19_05238at 767.230 kb on - strand, within MPMX19_05238at 767.230 kb on - strand, within MPMX19_05238at 767.230 kb on - strand, within MPMX19_05238at 767.230 kb on - strand, within MPMX19_05238at 767.230 kb on - strand, within MPMX19_05238at 767.230 kb on - strand, within MPMX19_05238at 767.326 kb on + strand, within MPMX19_05238at 767.326 kb on + strand, within MPMX19_05238at 767.326 kb on + strand, within MPMX19_05238at 767.380 kb on + strand, within MPMX19_05238at 767.380 kb on + strand, within MPMX19_05238at 767.380 kb on + strand, within MPMX19_05238at 767.380 kb on + strand, within MPMX19_05238at 767.380 kb on + strand, within MPMX19_05238at 767.380 kb on + strand, within MPMX19_05238at 767.380 kb on + strand, within MPMX19_05238at 767.380 kb on + strand, within MPMX19_05238at 767.380 kb on + strand, within MPMX19_05238at 767.380 kb on + strand, within MPMX19_05238at 767.381 kb on - strand, within MPMX19_05238at 767.381 kb on - strand, within MPMX19_05238at 767.381 kb on - strand, within MPMX19_05238at 767.381 kb on - strand, within MPMX19_05238at 767.381 kb on - strand, within MPMX19_05238at 767.381 kb on - strand, within MPMX19_05238at 767.381 kb on - strand, within MPMX19_05238at 767.381 kb on - strand, within MPMX19_05238at 767.381 kb on - strand, within MPMX19_05238at 767.381 kb on - strand, within MPMX19_05238at 767.381 kb on - strand, within MPMX19_05238at 767.381 kb on - strand, within MPMX19_05238at 767.479 kb on + strand, within MPMX19_05238at 767.479 kb on + strand, within MPMX19_05238at 767.479 kb on + strand, within MPMX19_05238at 767.480 kb on - strand, within MPMX19_05238at 767.480 kb on - strand, within MPMX19_05238at 767.480 kb on - strand, within MPMX19_05238at 767.480 kb on - strand, within MPMX19_05238at 767.480 kb on - strand, within MPMX19_05238at 767.500 kb on + strand, within MPMX19_05238at 767.500 kb on + strand, within MPMX19_05238at 767.500 kb on + strand, within MPMX19_05238at 767.501 kb on - strand, within MPMX19_05238at 767.501 kb on - strand, within MPMX19_05238at 767.501 kb on - strand, within MPMX19_05238at 767.501 kb on - strand, within MPMX19_05238at 767.596 kb on + strand, within MPMX19_05238at 767.596 kb on + strand, within MPMX19_05238at 767.596 kb on + strand, within MPMX19_05238at 767.597 kb on - strand, within MPMX19_05238at 767.638 kb on + strand, within MPMX19_05238at 767.638 kb on + strand, within MPMX19_05238at 767.638 kb on + strand, within MPMX19_05238at 767.638 kb on + strand, within MPMX19_05238at 767.638 kb on + strand, within MPMX19_05238at 767.639 kb on - strand, within MPMX19_05238at 767.639 kb on - strand, within MPMX19_05238at 767.639 kb on - strand, within MPMX19_05238at 767.680 kb on + strand, within MPMX19_05238at 767.680 kb on + strand, within MPMX19_05238at 767.680 kb on + strand, within MPMX19_05238at 767.681 kb on - strand, within MPMX19_05238at 767.809 kb on + strandat 767.906 kb on - strandat 767.963 kb on + strandat 767.971 kb on + strandat 767.971 kb on + strandat 767.971 kb on + strandat 767.971 kb on + strandat 767.971 kb on + strandat 767.971 kb on + strandat 767.972 kb on - strandat 767.972 kb on - strandat 767.972 kb on - strandat 767.972 kb on - strandat 767.972 kb on - strandat 768.392 kb on + strand, within MPMX19_05239at 768.393 kb on - strand, within MPMX19_05239at 768.393 kb on - strand, within MPMX19_05239at 768.393 kb on - strand, within MPMX19_05239at 768.407 kb on + strand, within MPMX19_05239at 768.407 kb on + strand, within MPMX19_05239at 768.407 kb on + strand, within MPMX19_05239at 768.408 kb on - strand, within MPMX19_05239at 768.626 kb on + strand, within MPMX19_05239at 768.626 kb on + strand, within MPMX19_05239at 768.626 kb on + strand, within MPMX19_05239at 768.626 kb on + strand, within MPMX19_05239at 768.626 kb on + strand, within MPMX19_05239at 768.626 kb on + strand, within MPMX19_05239at 768.626 kb on + strand, within MPMX19_05239at 768.626 kb on + strand, within MPMX19_05239at 768.626 kb on + strand, within MPMX19_05239at 768.626 kb on + strand, within MPMX19_05239at 768.627 kb on - strand, within MPMX19_05239at 768.627 kb on - strand, within MPMX19_05239at 768.627 kb on - strand, within MPMX19_05239at 768.627 kb on - strand, within MPMX19_05239at 768.627 kb on - strand, within MPMX19_05239at 768.627 kb on - strand, within MPMX19_05239at 768.627 kb on - strand, within MPMX19_05239at 768.627 kb on - strand, within MPMX19_05239at 768.648 kb on - strand, within MPMX19_05239at 768.648 kb on - strand, within MPMX19_05239at 768.648 kb on - strand, within MPMX19_05239at 768.994 kb on + strand, within MPMX19_05239at 768.994 kb on + strand, within MPMX19_05239at 768.995 kb on - strand, within MPMX19_05239at 768.995 kb on - strand, within MPMX19_05239at 768.995 kb on - strand, within MPMX19_05239at 769.378 kb on + strandat 769.378 kb on + strandat 769.378 kb on + strandat 769.378 kb on + strandat 769.378 kb on + strandat 769.378 kb on + strandat 769.378 kb on + strandat 769.378 kb on + strandat 769.379 kb on - strandat 769.418 kb on + strandat 769.418 kb on + strandat 769.418 kb on + strandat 769.470 kb on + strandat 769.470 kb on + strandat 769.471 kb on - strandat 769.768 kb on + strandat 769.768 kb on + strandat 769.768 kb on + strandat 769.768 kb on + strandat 769.769 kb on - strandat 769.769 kb on - strandat 769.769 kb on - strandat 769.769 kb on - strandat 769.811 kb on - strandat 770.190 kb on - strand, within MPMX19_05240at 770.204 kb on + strand, within MPMX19_05240at 770.204 kb on + strand, within MPMX19_05240at 770.204 kb on + strand, within MPMX19_05240at 770.204 kb on + strand, within MPMX19_05240at 770.204 kb on + strand, within MPMX19_05240at 770.204 kb on + strand, within MPMX19_05240at 770.204 kb on + strand, within MPMX19_05240at 770.204 kb on + strand, within MPMX19_05240at 770.204 kb on + strand, within MPMX19_05240at 770.204 kb on + strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.205 kb on - strand, within MPMX19_05240at 770.229 kb on + strand, within MPMX19_05240at 770.229 kb on + strand, within MPMX19_05240at 770.229 kb on + strand, within MPMX19_05240at 770.229 kb on + strand, within MPMX19_05240at 770.230 kb on - strand, within MPMX19_05240at 770.230 kb on - strand, within MPMX19_05240at 770.230 kb on - strand, within MPMX19_05240at 770.230 kb on - strand, within MPMX19_05240at 770.230 kb on - strand, within MPMX19_05240at 770.230 kb on - strand, within MPMX19_05240at 770.230 kb on - strand, within MPMX19_05240at 770.350 kb on + strand, within MPMX19_05240at 770.350 kb on + strand, within MPMX19_05240at 770.350 kb on + strand, within MPMX19_05240at 770.350 kb on + strand, within MPMX19_05240at 770.351 kb on - strand, within MPMX19_05240at 770.351 kb on - strand, within MPMX19_05240

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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767,023 + MPMX19_05238 0.42 -0.2
767,023 + MPMX19_05238 0.42 +0.4
767,023 + MPMX19_05238 0.42 -0.8
767,023 + MPMX19_05238 0.42 +0.2
767,023 + MPMX19_05238 0.42 -0.7
767,024 - MPMX19_05238 0.42 +1.2
767,077 + MPMX19_05238 0.45 -0.4
767,077 + MPMX19_05238 0.45 -0.3
767,077 + MPMX19_05238 0.45 +0.3
767,077 + MPMX19_05238 0.45 -0.2
767,077 + MPMX19_05238 0.45 -0.2
767,078 - MPMX19_05238 0.46 -0.1
767,078 - MPMX19_05238 0.46 +1.0
767,078 - MPMX19_05238 0.46 +0.7
767,227 + MPMX19_05238 0.55 +0.5
767,227 + MPMX19_05238 0.55 -0.3
767,227 + MPMX19_05238 0.55 -0.4
767,227 + MPMX19_05238 0.55 +0.3
767,227 + MPMX19_05238 0.55 -1.1
767,227 + MPMX19_05238 0.55 +0.4
767,227 + MPMX19_05238 0.55 -0.4
767,227 + MPMX19_05238 0.55 -0.7
767,227 + MPMX19_05238 0.55 -0.3
767,228 - MPMX19_05238 0.55 -1.1
767,228 - MPMX19_05238 0.55 -1.5
767,228 - MPMX19_05238 0.55 -0.3
767,228 - MPMX19_05238 0.55 -0.2
767,228 - MPMX19_05238 0.55 -1.2
767,228 - MPMX19_05238 0.55 +0.3
767,228 - MPMX19_05238 0.55 +0.9
767,228 - MPMX19_05238 0.55 -0.3
767,228 - MPMX19_05238 0.55 -1.7
767,228 - MPMX19_05238 0.55 -0.9
767,228 - MPMX19_05238 0.55 -1.1
767,228 - MPMX19_05238 0.55 -1.0
767,228 - MPMX19_05238 0.55 -0.1
767,228 - MPMX19_05238 0.55 -0.2
767,229 + MPMX19_05238 0.55 +0.0
767,229 + MPMX19_05238 0.55 +0.1
767,229 + MPMX19_05238 0.55 -1.3
767,229 + MPMX19_05238 0.55 +0.4
767,229 + MPMX19_05238 0.55 -1.2
767,229 + MPMX19_05238 0.55 +0.9
767,229 + MPMX19_05238 0.55 -1.5
767,229 + MPMX19_05238 0.55 +0.7
767,230 - MPMX19_05238 0.55 +0.9
767,230 - MPMX19_05238 0.55 +0.4
767,230 - MPMX19_05238 0.55 +1.1
767,230 - MPMX19_05238 0.55 +0.0
767,230 - MPMX19_05238 0.55 +0.0
767,230 - MPMX19_05238 0.55 +0.3
767,230 - MPMX19_05238 0.55 +0.6
767,230 - MPMX19_05238 0.55 -0.4
767,230 - MPMX19_05238 0.55 +0.4
767,230 - MPMX19_05238 0.55 -1.1
767,230 - MPMX19_05238 0.55 -2.1
767,326 + MPMX19_05238 0.61 -2.2
767,326 + MPMX19_05238 0.61 -0.6
767,326 + MPMX19_05238 0.61 +0.6
767,380 + MPMX19_05238 0.64 -0.4
767,380 + MPMX19_05238 0.64 +0.1
767,380 + MPMX19_05238 0.64 -0.7
767,380 + MPMX19_05238 0.64 -1.6
767,380 + MPMX19_05238 0.64 -0.1
767,380 + MPMX19_05238 0.64 -0.7
767,380 + MPMX19_05238 0.64 +0.0
767,380 + MPMX19_05238 0.64 -0.7
767,380 + MPMX19_05238 0.64 -1.3
767,380 + MPMX19_05238 0.64 -0.6
767,381 - MPMX19_05238 0.64 -0.6
767,381 - MPMX19_05238 0.64 -0.5
767,381 - MPMX19_05238 0.64 +0.6
767,381 - MPMX19_05238 0.64 +1.6
767,381 - MPMX19_05238 0.64 +0.0
767,381 - MPMX19_05238 0.64 +1.0
767,381 - MPMX19_05238 0.64 -1.0
767,381 - MPMX19_05238 0.64 +0.2
767,381 - MPMX19_05238 0.64 +0.6
767,381 - MPMX19_05238 0.64 +0.4
767,381 - MPMX19_05238 0.64 +0.4
767,381 - MPMX19_05238 0.64 +0.2
767,479 + MPMX19_05238 0.70 -1.4
767,479 + MPMX19_05238 0.70 -0.7
767,479 + MPMX19_05238 0.70 +0.9
767,480 - MPMX19_05238 0.70 +0.5
767,480 - MPMX19_05238 0.70 +0.6
767,480 - MPMX19_05238 0.70 +0.8
767,480 - MPMX19_05238 0.70 +0.0
767,480 - MPMX19_05238 0.70 -0.9
767,500 + MPMX19_05238 0.72 +0.7
767,500 + MPMX19_05238 0.72 -1.9
767,500 + MPMX19_05238 0.72 +0.2
767,501 - MPMX19_05238 0.72 -0.9
767,501 - MPMX19_05238 0.72 -1.7
767,501 - MPMX19_05238 0.72 -0.8
767,501 - MPMX19_05238 0.72 +1.1
767,596 + MPMX19_05238 0.77 -2.2
767,596 + MPMX19_05238 0.77 -0.5
767,596 + MPMX19_05238 0.77 -0.5
767,597 - MPMX19_05238 0.78 -0.8
767,638 + MPMX19_05238 0.80 -1.5
767,638 + MPMX19_05238 0.80 -1.0
767,638 + MPMX19_05238 0.80 -1.8
767,638 + MPMX19_05238 0.80 +0.0
767,638 + MPMX19_05238 0.80 -0.5
767,639 - MPMX19_05238 0.80 -1.9
767,639 - MPMX19_05238 0.80 -0.9
767,639 - MPMX19_05238 0.80 -2.3
767,680 + MPMX19_05238 0.83 -0.2
767,680 + MPMX19_05238 0.83 +0.4
767,680 + MPMX19_05238 0.83 -0.4
767,681 - MPMX19_05238 0.83 -0.7
767,809 + +0.4
767,906 - -1.2
767,963 + -0.7
767,971 + +0.7
767,971 + -1.0
767,971 + -3.1
767,971 + -0.5
767,971 + +0.0
767,971 + -1.7
767,972 - -0.4
767,972 - +0.6
767,972 - +0.5
767,972 - -0.6
767,972 - +0.9
768,392 + MPMX19_05239 0.26 -0.9
768,393 - MPMX19_05239 0.26 -0.7
768,393 - MPMX19_05239 0.26 -0.2
768,393 - MPMX19_05239 0.26 -0.9
768,407 + MPMX19_05239 0.27 +0.4
768,407 + MPMX19_05239 0.27 -1.2
768,407 + MPMX19_05239 0.27 -0.2
768,408 - MPMX19_05239 0.27 -0.7
768,626 + MPMX19_05239 0.42 -0.5
768,626 + MPMX19_05239 0.42 +0.5
768,626 + MPMX19_05239 0.42 -0.7
768,626 + MPMX19_05239 0.42 -1.4
768,626 + MPMX19_05239 0.42 -1.1
768,626 + MPMX19_05239 0.42 -0.3
768,626 + MPMX19_05239 0.42 -0.6
768,626 + MPMX19_05239 0.42 +0.0
768,626 + MPMX19_05239 0.42 -0.2
768,626 + MPMX19_05239 0.42 -0.4
768,627 - MPMX19_05239 0.43 -0.4
768,627 - MPMX19_05239 0.43 -1.6
768,627 - MPMX19_05239 0.43 -1.6
768,627 - MPMX19_05239 0.43 -0.4
768,627 - MPMX19_05239 0.43 -0.3
768,627 - MPMX19_05239 0.43 -1.7
768,627 - MPMX19_05239 0.43 +1.0
768,627 - MPMX19_05239 0.43 -1.6
768,648 - MPMX19_05239 0.44 -1.4
768,648 - MPMX19_05239 0.44 -0.5
768,648 - MPMX19_05239 0.44 -1.1
768,994 + MPMX19_05239 0.68 +0.6
768,994 + MPMX19_05239 0.68 -0.2
768,995 - MPMX19_05239 0.68 -0.7
768,995 - MPMX19_05239 0.68 -1.7
768,995 - MPMX19_05239 0.68 -0.1
769,378 + +0.6
769,378 + +0.0
769,378 + -1.3
769,378 + -0.3
769,378 + +0.1
769,378 + -0.8
769,378 + +1.2
769,378 + +0.4
769,379 - -1.0
769,418 + -0.4
769,418 + +0.5
769,418 + +0.0
769,470 + +0.4
769,470 + +0.9
769,471 - -0.6
769,768 + -1.7
769,768 + -2.4
769,768 + -1.1
769,768 + -0.7
769,769 - +1.2
769,769 - -0.1
769,769 - -1.2
769,769 - -0.2
769,811 - +0.4
770,190 - MPMX19_05240 0.36 +0.6
770,204 + MPMX19_05240 0.37 +0.8
770,204 + MPMX19_05240 0.37 +0.8
770,204 + MPMX19_05240 0.37 +0.3
770,204 + MPMX19_05240 0.37 -1.5
770,204 + MPMX19_05240 0.37 -0.8
770,204 + MPMX19_05240 0.37 -0.5
770,204 + MPMX19_05240 0.37 -0.1
770,204 + MPMX19_05240 0.37 -2.3
770,204 + MPMX19_05240 0.37 -1.6
770,204 + MPMX19_05240 0.37 +0.0
770,205 - MPMX19_05240 0.37 -0.4
770,205 - MPMX19_05240 0.37 +0.6
770,205 - MPMX19_05240 0.37 -0.3
770,205 - MPMX19_05240 0.37 +0.1
770,205 - MPMX19_05240 0.37 -1.1
770,205 - MPMX19_05240 0.37 -0.4
770,205 - MPMX19_05240 0.37 -1.8
770,205 - MPMX19_05240 0.37 -0.2
770,205 - MPMX19_05240 0.37 -0.4
770,205 - MPMX19_05240 0.37 -1.1
770,205 - MPMX19_05240 0.37 -0.6
770,205 - MPMX19_05240 0.37 -0.1
770,205 - MPMX19_05240 0.37 +0.4
770,205 - MPMX19_05240 0.37 -0.1
770,205 - MPMX19_05240 0.37 -0.4
770,229 + MPMX19_05240 0.40 +0.0
770,229 + MPMX19_05240 0.40 -1.6
770,229 + MPMX19_05240 0.40 -0.7
770,229 + MPMX19_05240 0.40 -1.4
770,230 - MPMX19_05240 0.40 +0.5
770,230 - MPMX19_05240 0.40 -0.4
770,230 - MPMX19_05240 0.40 -0.7
770,230 - MPMX19_05240 0.40 -0.6
770,230 - MPMX19_05240 0.40 -2.3
770,230 - MPMX19_05240 0.40 -0.9
770,230 - MPMX19_05240 0.40 -0.5
770,350 + MPMX19_05240 0.52 +0.0
770,350 + MPMX19_05240 0.52 -1.2
770,350 + MPMX19_05240 0.52 +0.2
770,350 + MPMX19_05240 0.52 -0.7
770,351 - MPMX19_05240 0.52 +0.9
770,351 - MPMX19_05240 0.52 -1.9

Or see this region's nucleotide sequence