Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04951 and MPMX19_04952 overlap by 4 nucleotides MPMX19_04952 and MPMX19_04953 are separated by 4 nucleotides MPMX19_04953 and MPMX19_04954 are separated by 54 nucleotides MPMX19_04954 and MPMX19_04955 are separated by 86 nucleotides
MPMX19_04951: MPMX19_04951 - hypothetical protein, at 414,769 to 415,785
_04951
MPMX19_04952: MPMX19_04952 - Lipopolysaccharide export system ATP-binding protein LptB, at 415,782 to 416,501
_04952
MPMX19_04953: MPMX19_04953 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 416,506 to 417,279
_04953
MPMX19_04954: MPMX19_04954 - Putative hydro-lyase, at 417,334 to 418,122
_04954
MPMX19_04955: MPMX19_04955 - hypothetical protein, at 418,209 to 418,970
_04955
Position (kb)
416
417
418 Strain fitness (log2 ratio)
-2
-1
0
1 at 415.600 kb on + strand, within MPMX19_04951 at 415.601 kb on - strand, within MPMX19_04951 at 415.601 kb on - strand, within MPMX19_04951 at 415.651 kb on + strand, within MPMX19_04951 at 415.651 kb on + strand, within MPMX19_04951 at 415.652 kb on - strand, within MPMX19_04951 at 415.652 kb on - strand, within MPMX19_04951 at 415.652 kb on - strand, within MPMX19_04951 at 415.652 kb on - strand, within MPMX19_04951 at 415.652 kb on - strand, within MPMX19_04951 at 415.652 kb on - strand, within MPMX19_04951 at 416.305 kb on + strand, within MPMX19_04952 at 416.306 kb on - strand, within MPMX19_04952 at 416.306 kb on - strand, within MPMX19_04952 at 416.421 kb on + strand, within MPMX19_04952 at 416.421 kb on + strand, within MPMX19_04952 at 416.487 kb on + strand at 416.488 kb on - strand at 416.488 kb on - strand at 416.488 kb on - strand at 416.605 kb on + strand, within MPMX19_04953 at 416.926 kb on + strand, within MPMX19_04953 at 417.187 kb on + strand, within MPMX19_04953 at 417.187 kb on + strand, within MPMX19_04953 at 417.188 kb on - strand, within MPMX19_04953 at 417.188 kb on - strand, within MPMX19_04953 at 417.188 kb on - strand, within MPMX19_04953 at 417.188 kb on - strand, within MPMX19_04953 at 417.188 kb on - strand, within MPMX19_04953 at 417.265 kb on + strand at 417.265 kb on + strand at 417.265 kb on + strand at 417.266 kb on - strand at 417.266 kb on - strand at 417.266 kb on - strand at 417.266 kb on - strand at 417.266 kb on - strand at 417.601 kb on + strand, within MPMX19_04954 at 417.763 kb on + strand, within MPMX19_04954 at 417.763 kb on + strand, within MPMX19_04954 at 417.763 kb on + strand, within MPMX19_04954 at 417.763 kb on + strand, within MPMX19_04954 at 417.763 kb on + strand, within MPMX19_04954 at 417.763 kb on + strand, within MPMX19_04954 at 417.764 kb on - strand, within MPMX19_04954 at 417.764 kb on - strand, within MPMX19_04954 at 417.936 kb on + strand, within MPMX19_04954 at 417.936 kb on + strand, within MPMX19_04954 at 417.937 kb on - strand, within MPMX19_04954 at 418.154 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 415,600 + MPMX19_04951 0.82 +0.1 415,601 - MPMX19_04951 0.82 -1.5 415,601 - MPMX19_04951 0.82 -0.3 415,651 + MPMX19_04951 0.87 -0.4 415,651 + MPMX19_04951 0.87 -0.7 415,652 - MPMX19_04951 0.87 -0.8 415,652 - MPMX19_04951 0.87 -0.9 415,652 - MPMX19_04951 0.87 -1.9 415,652 - MPMX19_04951 0.87 -0.4 415,652 - MPMX19_04951 0.87 -2.4 415,652 - MPMX19_04951 0.87 +0.1 416,305 + MPMX19_04952 0.73 +0.2 416,306 - MPMX19_04952 0.73 -0.0 416,306 - MPMX19_04952 0.73 -1.6 416,421 + MPMX19_04952 0.89 +0.1 416,421 + MPMX19_04952 0.89 -1.1 416,487 + +0.5 416,488 - -1.4 416,488 - -0.9 416,488 - -0.1 416,605 + MPMX19_04953 0.13 +0.1 416,926 + MPMX19_04953 0.54 -0.6 417,187 + MPMX19_04953 0.88 +0.4 417,187 + MPMX19_04953 0.88 -1.9 417,188 - MPMX19_04953 0.88 -1.6 417,188 - MPMX19_04953 0.88 -1.2 417,188 - MPMX19_04953 0.88 -2.1 417,188 - MPMX19_04953 0.88 +0.1 417,188 - MPMX19_04953 0.88 -2.1 417,265 + -1.2 417,265 + -1.4 417,265 + -2.3 417,266 - -0.1 417,266 - -0.7 417,266 - -2.4 417,266 - -0.6 417,266 - -0.5 417,601 + MPMX19_04954 0.34 -0.8 417,763 + MPMX19_04954 0.54 -0.4 417,763 + MPMX19_04954 0.54 +0.2 417,763 + MPMX19_04954 0.54 -0.4 417,763 + MPMX19_04954 0.54 -2.1 417,763 + MPMX19_04954 0.54 -1.4 417,763 + MPMX19_04954 0.54 +0.2 417,764 - MPMX19_04954 0.54 -1.5 417,764 - MPMX19_04954 0.54 -0.8 417,936 + MPMX19_04954 0.76 -0.7 417,936 + MPMX19_04954 0.76 +0.8 417,937 - MPMX19_04954 0.76 +1.2 418,154 + -0.9
Or see this region's nucleotide sequence