Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04953

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04951 and MPMX19_04952 overlap by 4 nucleotidesMPMX19_04952 and MPMX19_04953 are separated by 4 nucleotidesMPMX19_04953 and MPMX19_04954 are separated by 54 nucleotidesMPMX19_04954 and MPMX19_04955 are separated by 86 nucleotides MPMX19_04951: MPMX19_04951 - hypothetical protein, at 414,769 to 415,785 _04951 MPMX19_04952: MPMX19_04952 - Lipopolysaccharide export system ATP-binding protein LptB, at 415,782 to 416,501 _04952 MPMX19_04953: MPMX19_04953 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 416,506 to 417,279 _04953 MPMX19_04954: MPMX19_04954 - Putative hydro-lyase, at 417,334 to 418,122 _04954 MPMX19_04955: MPMX19_04955 - hypothetical protein, at 418,209 to 418,970 _04955 Position (kb) 416 417 418Strain fitness (log2 ratio) -2 -1 0 1at 415.600 kb on + strand, within MPMX19_04951at 415.601 kb on - strand, within MPMX19_04951at 415.601 kb on - strand, within MPMX19_04951at 415.651 kb on + strand, within MPMX19_04951at 415.651 kb on + strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 416.305 kb on + strand, within MPMX19_04952at 416.306 kb on - strand, within MPMX19_04952at 416.306 kb on - strand, within MPMX19_04952at 416.421 kb on + strand, within MPMX19_04952at 416.421 kb on + strand, within MPMX19_04952at 416.487 kb on + strandat 416.488 kb on - strandat 416.488 kb on - strandat 416.488 kb on - strandat 416.605 kb on + strand, within MPMX19_04953at 416.926 kb on + strand, within MPMX19_04953at 417.187 kb on + strand, within MPMX19_04953at 417.187 kb on + strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.188 kb on - strand, within MPMX19_04953at 417.265 kb on + strandat 417.265 kb on + strandat 417.265 kb on + strandat 417.266 kb on - strandat 417.266 kb on - strandat 417.266 kb on - strandat 417.266 kb on - strandat 417.266 kb on - strandat 417.601 kb on + strand, within MPMX19_04954at 417.763 kb on + strand, within MPMX19_04954at 417.763 kb on + strand, within MPMX19_04954at 417.763 kb on + strand, within MPMX19_04954at 417.763 kb on + strand, within MPMX19_04954at 417.763 kb on + strand, within MPMX19_04954at 417.763 kb on + strand, within MPMX19_04954at 417.764 kb on - strand, within MPMX19_04954at 417.764 kb on - strand, within MPMX19_04954at 417.936 kb on + strand, within MPMX19_04954at 417.936 kb on + strand, within MPMX19_04954at 417.937 kb on - strand, within MPMX19_04954at 418.154 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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415,600 + MPMX19_04951 0.82 +0.1
415,601 - MPMX19_04951 0.82 -1.5
415,601 - MPMX19_04951 0.82 -0.3
415,651 + MPMX19_04951 0.87 -0.4
415,651 + MPMX19_04951 0.87 -0.7
415,652 - MPMX19_04951 0.87 -0.8
415,652 - MPMX19_04951 0.87 -0.9
415,652 - MPMX19_04951 0.87 -1.9
415,652 - MPMX19_04951 0.87 -0.4
415,652 - MPMX19_04951 0.87 -2.4
415,652 - MPMX19_04951 0.87 +0.1
416,305 + MPMX19_04952 0.73 +0.2
416,306 - MPMX19_04952 0.73 -0.0
416,306 - MPMX19_04952 0.73 -1.6
416,421 + MPMX19_04952 0.89 +0.1
416,421 + MPMX19_04952 0.89 -1.1
416,487 + +0.5
416,488 - -1.4
416,488 - -0.9
416,488 - -0.1
416,605 + MPMX19_04953 0.13 +0.1
416,926 + MPMX19_04953 0.54 -0.6
417,187 + MPMX19_04953 0.88 +0.4
417,187 + MPMX19_04953 0.88 -1.9
417,188 - MPMX19_04953 0.88 -1.6
417,188 - MPMX19_04953 0.88 -1.2
417,188 - MPMX19_04953 0.88 -2.1
417,188 - MPMX19_04953 0.88 +0.1
417,188 - MPMX19_04953 0.88 -2.1
417,265 + -1.2
417,265 + -1.4
417,265 + -2.3
417,266 - -0.1
417,266 - -0.7
417,266 - -2.4
417,266 - -0.6
417,266 - -0.5
417,601 + MPMX19_04954 0.34 -0.8
417,763 + MPMX19_04954 0.54 -0.4
417,763 + MPMX19_04954 0.54 +0.2
417,763 + MPMX19_04954 0.54 -0.4
417,763 + MPMX19_04954 0.54 -2.1
417,763 + MPMX19_04954 0.54 -1.4
417,763 + MPMX19_04954 0.54 +0.2
417,764 - MPMX19_04954 0.54 -1.5
417,764 - MPMX19_04954 0.54 -0.8
417,936 + MPMX19_04954 0.76 -0.7
417,936 + MPMX19_04954 0.76 +0.8
417,937 - MPMX19_04954 0.76 +1.2
418,154 + -0.9

Or see this region's nucleotide sequence