Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04870 and MPMX19_04871 are separated by 118 nucleotides MPMX19_04871 and MPMX19_04872 are separated by 461 nucleotides
MPMX19_04870: MPMX19_04870 - Transcriptional regulatory protein OmpR, at 313,532 to 314,317
_04870
MPMX19_04871: MPMX19_04871 - hypothetical protein, at 314,436 to 315,311
_04871
MPMX19_04872: MPMX19_04872 - hypothetical protein, at 315,773 to 317,494
_04872
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 313.584 kb on + strand at 313.584 kb on + strand at 313.584 kb on + strand at 313.585 kb on - strand at 313.683 kb on + strand, within MPMX19_04870 at 313.683 kb on + strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.822 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.259 kb on + strand at 314.259 kb on + strand at 314.259 kb on + strand at 314.260 kb on - strand at 314.260 kb on - strand at 314.260 kb on - strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.359 kb on - strand at 314.386 kb on + strand at 314.402 kb on + strand at 314.403 kb on - strand at 314.403 kb on - strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.437 kb on + strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.438 kb on - strand at 314.452 kb on + strand at 314.452 kb on + strand at 314.453 kb on - strand at 314.477 kb on - strand at 314.477 kb on - strand at 314.477 kb on - strand at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.587 kb on + strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.588 kb on - strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.686 kb on + strand, within MPMX19_04871 at 314.687 kb on - strand, within MPMX19_04871 at 314.687 kb on - strand, within MPMX19_04871 at 314.923 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.932 kb on + strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 314.933 kb on - strand, within MPMX19_04871 at 315.046 kb on + strand, within MPMX19_04871 at 315.368 kb on + strand at 315.368 kb on + strand at 315.368 kb on + strand at 315.369 kb on - strand at 315.369 kb on - strand at 315.369 kb on - strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.378 kb on + strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.379 kb on - strand at 315.457 kb on + strand at 315.457 kb on + strand at 315.458 kb on - strand at 315.458 kb on - strand at 315.501 kb on + strand at 315.501 kb on + strand at 315.502 kb on - strand at 315.502 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.536 kb on - strand at 315.557 kb on - strand at 315.557 kb on - strand at 315.557 kb on - strand at 315.585 kb on + strand at 315.585 kb on + strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.667 kb on + strand at 315.685 kb on + strand at 315.686 kb on - strand at 315.806 kb on + strand at 315.806 kb on + strand at 315.807 kb on - strand at 315.807 kb on - strand at 315.807 kb on - strand at 315.808 kb on + strand at 315.808 kb on + strand at 315.808 kb on + strand at 315.808 kb on + strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 315.809 kb on - strand at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.271 kb on + strand, within MPMX19_04872 at 316.272 kb on - strand, within MPMX19_04872 at 316.272 kb on - strand, within MPMX19_04872 at 316.272 kb on - strand, within MPMX19_04872
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 313,584 + +1.0 313,584 + -1.2 313,584 + +0.1 313,585 - -0.4 313,683 + MPMX19_04870 0.19 +2.1 313,683 + MPMX19_04870 0.19 -0.7 313,684 - MPMX19_04870 0.19 -0.9 313,684 - MPMX19_04870 0.19 +0.8 313,684 - MPMX19_04870 0.19 +0.3 313,684 - MPMX19_04870 0.19 +0.5 313,776 + MPMX19_04870 0.31 -0.9 313,776 + MPMX19_04870 0.31 -0.4 313,776 + MPMX19_04870 0.31 -0.9 313,776 + MPMX19_04870 0.31 +1.1 313,776 + MPMX19_04870 0.31 -0.8 313,776 + MPMX19_04870 0.31 -1.1 313,776 + MPMX19_04870 0.31 +0.1 313,776 + MPMX19_04870 0.31 -1.4 313,776 + MPMX19_04870 0.31 -0.4 313,777 - MPMX19_04870 0.31 +0.6 313,777 - MPMX19_04870 0.31 -0.9 313,777 - MPMX19_04870 0.31 +0.1 313,777 - MPMX19_04870 0.31 -1.2 313,777 - MPMX19_04870 0.31 -0.1 313,777 - MPMX19_04870 0.31 -0.0 313,777 - MPMX19_04870 0.31 -0.9 313,777 - MPMX19_04870 0.31 +0.1 313,822 + MPMX19_04870 0.37 -0.2 314,025 + MPMX19_04870 0.63 -0.2 314,025 + MPMX19_04870 0.63 -0.6 314,025 + MPMX19_04870 0.63 -0.5 314,025 + MPMX19_04870 0.63 -0.9 314,025 + MPMX19_04870 0.63 +0.2 314,025 + MPMX19_04870 0.63 -0.0 314,025 + MPMX19_04870 0.63 -1.8 314,025 + MPMX19_04870 0.63 +0.1 314,026 - MPMX19_04870 0.63 +0.6 314,026 - MPMX19_04870 0.63 -1.4 314,026 - MPMX19_04870 0.63 +1.6 314,026 - MPMX19_04870 0.63 -0.1 314,026 - MPMX19_04870 0.63 +1.1 314,026 - MPMX19_04870 0.63 -0.7 314,026 - MPMX19_04870 0.63 -0.5 314,026 - MPMX19_04870 0.63 -0.3 314,026 - MPMX19_04870 0.63 -0.2 314,026 - MPMX19_04870 0.63 +1.4 314,026 - MPMX19_04870 0.63 +2.2 314,026 - MPMX19_04870 0.63 -0.7 314,259 + +1.2 314,259 + +0.1 314,259 + -0.2 314,260 - +1.1 314,260 - +2.1 314,260 - -0.9 314,345 + +0.4 314,345 + -0.8 314,345 + -0.7 314,345 + +1.4 314,345 + +0.8 314,346 - -0.8 314,346 - +0.1 314,346 - +1.1 314,346 - -0.5 314,346 - +1.2 314,346 - +0.1 314,353 + +1.4 314,353 + -0.9 314,353 + -0.9 314,353 + +1.2 314,353 + +0.1 314,353 + -0.9 314,353 + +0.5 314,353 + +0.6 314,353 + -0.2 314,354 - -0.1 314,354 - -0.9 314,354 - -0.4 314,354 - +0.4 314,354 - +0.3 314,355 + +0.1 314,355 + -0.2 314,355 + -1.7 314,355 + +1.1 314,355 + +0.4 314,355 + -0.4 314,355 + -0.4 314,355 + -1.5 314,355 + -1.1 314,356 - -0.5 314,356 - -0.3 314,356 - -1.4 314,356 - +0.4 314,356 - -0.8 314,356 - +0.8 314,358 + -0.3 314,358 + -0.6 314,358 + -0.4 314,358 + +1.2 314,358 + -1.2 314,359 - -2.5 314,386 + -1.2 314,402 + +0.2 314,403 - -0.8 314,403 - +0.1 314,437 + -0.9 314,437 + +0.3 314,437 + -1.1 314,437 + -0.1 314,437 + +1.6 314,438 - +0.2 314,438 - -0.6 314,438 - +0.9 314,438 - -0.9 314,438 - -2.6 314,438 - +1.2 314,438 - -0.5 314,452 + -2.4 314,452 + -0.8 314,453 - +0.6 314,477 - -0.7 314,477 - -1.4 314,477 - +0.4 314,587 + MPMX19_04871 0.17 +0.1 314,587 + MPMX19_04871 0.17 -0.4 314,587 + MPMX19_04871 0.17 +1.6 314,587 + MPMX19_04871 0.17 +1.8 314,587 + MPMX19_04871 0.17 -0.4 314,587 + MPMX19_04871 0.17 -3.1 314,587 + MPMX19_04871 0.17 +0.4 314,588 - MPMX19_04871 0.17 -0.2 314,588 - MPMX19_04871 0.17 +0.1 314,588 - MPMX19_04871 0.17 -0.4 314,588 - MPMX19_04871 0.17 -0.1 314,686 + MPMX19_04871 0.29 -0.4 314,686 + MPMX19_04871 0.29 -0.0 314,686 + MPMX19_04871 0.29 -0.1 314,686 + MPMX19_04871 0.29 -0.1 314,686 + MPMX19_04871 0.29 +0.6 314,686 + MPMX19_04871 0.29 +1.5 314,686 + MPMX19_04871 0.29 -1.1 314,687 - MPMX19_04871 0.29 -0.7 314,687 - MPMX19_04871 0.29 -0.2 314,923 + MPMX19_04871 0.56 +0.1 314,932 + MPMX19_04871 0.57 +0.6 314,932 + MPMX19_04871 0.57 -0.5 314,932 + MPMX19_04871 0.57 -1.2 314,932 + MPMX19_04871 0.57 +0.4 314,932 + MPMX19_04871 0.57 +0.1 314,932 + MPMX19_04871 0.57 +0.2 314,932 + MPMX19_04871 0.57 +0.5 314,932 + MPMX19_04871 0.57 -0.1 314,933 - MPMX19_04871 0.57 +1.2 314,933 - MPMX19_04871 0.57 -0.7 314,933 - MPMX19_04871 0.57 +0.0 314,933 - MPMX19_04871 0.57 -0.4 314,933 - MPMX19_04871 0.57 -0.6 314,933 - MPMX19_04871 0.57 +0.8 314,933 - MPMX19_04871 0.57 -1.8 314,933 - MPMX19_04871 0.57 -0.4 314,933 - MPMX19_04871 0.57 -0.7 314,933 - MPMX19_04871 0.57 +1.3 315,046 + MPMX19_04871 0.70 -0.7 315,368 + -0.2 315,368 + -0.3 315,368 + -0.5 315,369 - -0.2 315,369 - -0.3 315,369 - +1.4 315,378 + -0.9 315,378 + -0.8 315,378 + -0.8 315,378 + +2.1 315,378 + +0.9 315,378 + +0.2 315,379 - -0.3 315,379 - -0.9 315,379 - -0.7 315,379 - -0.0 315,379 - +1.2 315,379 - -0.3 315,457 + -0.6 315,457 + -1.7 315,458 - +0.1 315,458 - +0.5 315,501 + -1.1 315,501 + +1.4 315,502 - +0.7 315,502 - +0.3 315,536 - -1.7 315,536 - -1.2 315,536 - +0.8 315,536 - +0.1 315,536 - -1.4 315,536 - -1.3 315,557 - -0.2 315,557 - +0.4 315,557 - +0.5 315,585 + -0.5 315,585 + -0.1 315,592 - -0.1 315,592 - -0.4 315,592 - -0.4 315,592 - -0.7 315,667 + -0.9 315,685 + -0.4 315,686 - -0.6 315,806 + -1.4 315,806 + +0.5 315,807 - -2.1 315,807 - -0.9 315,807 - +0.4 315,808 + -2.1 315,808 + -0.4 315,808 + -0.7 315,808 + -0.4 315,809 - +0.3 315,809 - -1.2 315,809 - -1.8 315,809 - +0.8 315,809 - +0.1 315,809 - -0.4 315,809 - -0.8 315,809 - +2.2 316,271 + MPMX19_04872 0.29 +0.1 316,271 + MPMX19_04872 0.29 +0.7 316,271 + MPMX19_04872 0.29 +0.6 316,271 + MPMX19_04872 0.29 -0.9 316,271 + MPMX19_04872 0.29 -0.9 316,271 + MPMX19_04872 0.29 -0.3 316,271 + MPMX19_04872 0.29 -0.5 316,271 + MPMX19_04872 0.29 +0.3 316,271 + MPMX19_04872 0.29 -0.3 316,272 - MPMX19_04872 0.29 -0.7 316,272 - MPMX19_04872 0.29 -0.7 316,272 - MPMX19_04872 0.29 -1.1
Or see this region's nucleotide sequence