Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04422 and MPMX19_04423 are separated by 223 nucleotides MPMX19_04423 and MPMX19_04424 are separated by 947 nucleotides
MPMX19_04422: MPMX19_04422 - Benzoate--CoA ligase, at 785,905 to 787,671
_04422
MPMX19_04423: MPMX19_04423 - hypothetical protein, at 787,895 to 788,398
_04423
MPMX19_04424: MPMX19_04424 - Phyllosphere-induced regulator PhyR, at 789,346 to 790,149
_04424
Position (kb) 787
788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 787.283 kb on + strand, within MPMX19_04422 at 787.283 kb on + strand, within MPMX19_04422 at 787.337 kb on + strand, within MPMX19_04422 at 787.337 kb on + strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.443 kb on - strand, within MPMX19_04422 at 787.639 kb on - strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.743 kb on + strand at 787.743 kb on + strand at 787.743 kb on + strand at 787.744 kb on - strand at 787.744 kb on - strand at 787.744 kb on - strand at 787.744 kb on - strand at 787.744 kb on - strand at 787.849 kb on + strand at 787.850 kb on - strand at 787.911 kb on + strand at 787.911 kb on + strand at 787.911 kb on + strand at 787.912 kb on - strand at 787.912 kb on - strand at 788.146 kb on - strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.548 kb on + strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.695 kb on + strand at 788.695 kb on + strand at 788.695 kb on + strand at 788.696 kb on - strand at 788.696 kb on - strand at 788.913 kb on + strand at 788.914 kb on - strand at 788.914 kb on - strand at 788.914 kb on - strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.922 kb on - strand at 788.922 kb on - strand at 788.922 kb on - strand at 788.922 kb on - strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.940 kb on - strand at 788.940 kb on - strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.964 kb on - strand at 788.964 kb on - strand at 788.964 kb on - strand at 788.964 kb on - strand at 788.978 kb on + strand at 788.978 kb on + strand at 788.978 kb on + strand at 788.978 kb on + strand at 788.979 kb on - strand at 789.023 kb on + strand at 789.023 kb on + strand at 789.024 kb on - strand at 789.024 kb on - strand at 789.026 kb on + strand at 789.026 kb on + strand at 789.027 kb on - strand at 789.053 kb on + strand at 789.062 kb on + strand at 789.087 kb on - strand at 789.105 kb on + strand at 789.105 kb on + strand at 789.105 kb on + strand at 789.105 kb on + strand at 789.106 kb on - strand at 789.106 kb on - strand at 789.106 kb on - strand at 789.106 kb on - strand at 789.273 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.385 kb on + strand at 789.386 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 787,283 + MPMX19_04422 0.78 -0.6 787,283 + MPMX19_04422 0.78 +0.5 787,337 + MPMX19_04422 0.81 +0.8 787,337 + MPMX19_04422 0.81 +0.5 787,338 - MPMX19_04422 0.81 +0.2 787,338 - MPMX19_04422 0.81 +1.0 787,338 - MPMX19_04422 0.81 -0.2 787,338 - MPMX19_04422 0.81 -0.9 787,338 - MPMX19_04422 0.81 -0.3 787,338 - MPMX19_04422 0.81 -1.8 787,338 - MPMX19_04422 0.81 +0.4 787,346 - MPMX19_04422 0.82 -1.0 787,346 - MPMX19_04422 0.82 -1.4 787,346 - MPMX19_04422 0.82 +0.3 787,346 - MPMX19_04422 0.82 +0.3 787,346 - MPMX19_04422 0.82 +0.4 787,443 - MPMX19_04422 0.87 -0.7 787,639 - -0.2 787,730 + -1.4 787,730 + -2.9 787,730 + +0.1 787,730 + -2.8 787,730 + -1.0 787,730 + -1.2 787,731 - -2.2 787,731 - -0.8 787,731 - +0.1 787,731 - +0.3 787,731 - -1.9 787,731 - -1.5 787,741 + -0.0 787,741 + +1.8 787,741 + +0.1 787,741 + -0.9 787,741 + +1.0 787,741 + -0.2 787,742 - +1.2 787,742 - +0.5 787,742 - +1.6 787,742 - -1.0 787,742 - +0.5 787,742 - -0.2 787,742 - +0.0 787,742 - -1.0 787,742 - +0.2 787,742 - -0.6 787,743 + -0.7 787,743 + +0.3 787,743 + +1.2 787,744 - +0.5 787,744 - -0.6 787,744 - +0.2 787,744 - -0.2 787,744 - +0.6 787,849 + +0.7 787,850 - -0.9 787,911 + +0.5 787,911 + +0.5 787,911 + -2.4 787,912 - -1.8 787,912 - -0.6 788,146 - MPMX19_04423 0.50 +0.9 788,202 + MPMX19_04423 0.61 +0.0 788,202 + MPMX19_04423 0.61 +0.4 788,202 + MPMX19_04423 0.61 -1.9 788,202 + MPMX19_04423 0.61 +1.3 788,202 + MPMX19_04423 0.61 -0.7 788,202 + MPMX19_04423 0.61 -0.0 788,202 + MPMX19_04423 0.61 -1.4 788,202 + MPMX19_04423 0.61 -0.7 788,202 + MPMX19_04423 0.61 -0.6 788,203 - MPMX19_04423 0.61 -0.7 788,203 - MPMX19_04423 0.61 -0.2 788,203 - MPMX19_04423 0.61 -0.1 788,203 - MPMX19_04423 0.61 +0.9 788,203 - MPMX19_04423 0.61 -0.8 788,203 - MPMX19_04423 0.61 -0.4 788,203 - MPMX19_04423 0.61 -0.4 788,203 - MPMX19_04423 0.61 +0.4 788,203 - MPMX19_04423 0.61 -1.9 788,203 - MPMX19_04423 0.61 +1.2 788,203 - MPMX19_04423 0.61 -0.6 788,298 + MPMX19_04423 0.80 +0.2 788,298 + MPMX19_04423 0.80 -0.7 788,298 + MPMX19_04423 0.80 -0.6 788,298 + MPMX19_04423 0.80 +0.8 788,298 + MPMX19_04423 0.80 +0.2 788,298 + MPMX19_04423 0.80 +0.8 788,298 + MPMX19_04423 0.80 +0.4 788,298 + MPMX19_04423 0.80 -0.8 788,298 + MPMX19_04423 0.80 -1.7 788,298 + MPMX19_04423 0.80 -1.5 788,298 + MPMX19_04423 0.80 -0.1 788,298 + MPMX19_04423 0.80 -1.0 788,298 + MPMX19_04423 0.80 -1.2 788,299 - MPMX19_04423 0.80 -1.6 788,299 - MPMX19_04423 0.80 +0.2 788,299 - MPMX19_04423 0.80 +0.9 788,299 - MPMX19_04423 0.80 -0.6 788,299 - MPMX19_04423 0.80 -0.2 788,299 - MPMX19_04423 0.80 +0.4 788,548 + +0.4 788,560 - -1.3 788,560 - -1.3 788,560 - -0.2 788,560 - +0.5 788,628 - +1.2 788,628 - +0.2 788,628 - +1.8 788,628 - -1.9 788,628 - -1.2 788,628 - -0.4 788,628 - -0.1 788,639 + -1.4 788,639 + -2.2 788,639 + +0.6 788,639 + -0.9 788,639 + -0.1 788,640 - -1.8 788,640 - +0.2 788,640 - -1.3 788,640 - -0.2 788,640 - -1.1 788,640 - -0.9 788,695 + +0.2 788,695 + -0.1 788,695 + +0.6 788,696 - -0.4 788,696 - -0.1 788,913 + -0.4 788,914 - -3.6 788,914 - +1.2 788,914 - -0.3 788,921 + +0.3 788,921 + -1.0 788,921 + -0.7 788,921 + -0.6 788,921 + +0.6 788,921 + +1.3 788,921 + +0.5 788,921 + -1.6 788,921 + -0.6 788,921 + -0.6 788,922 - -1.9 788,922 - -1.0 788,922 - -1.7 788,922 - -2.0 788,939 + +0.4 788,939 + +0.4 788,939 + -2.6 788,939 + -0.6 788,939 + +0.0 788,940 - -1.4 788,940 - -0.4 788,963 + +0.5 788,963 + -0.2 788,963 + +0.1 788,963 + -0.9 788,963 + -1.6 788,964 - -0.3 788,964 - -0.7 788,964 - -0.6 788,964 - -0.2 788,978 + -0.7 788,978 + -0.7 788,978 + -1.0 788,978 + -0.6 788,979 - -0.4 789,023 + +0.2 789,023 + +0.0 789,024 - +1.8 789,024 - -2.0 789,026 + +1.0 789,026 + -0.7 789,027 - +0.5 789,053 + -0.7 789,062 + -0.7 789,087 - -0.0 789,105 + -0.6 789,105 + +0.5 789,105 + -1.5 789,105 + -1.4 789,106 - -1.3 789,106 - +0.2 789,106 - -0.6 789,106 - -2.1 789,273 + -1.4 789,355 + -0.3 789,355 + -1.2 789,355 + +1.8 789,355 + +0.3 789,355 + -0.4 789,355 + -0.7 789,355 + -1.2 789,355 + -1.1 789,355 + +0.9 789,355 + +0.3 789,355 + -1.8 789,355 + -0.7 789,355 + -0.4 789,355 + -2.0 789,356 - +0.3 789,356 - -1.6 789,356 - +0.3 789,356 - +0.2 789,356 - -1.4 789,385 + -0.4 789,386 - -0.7
Or see this region's nucleotide sequence