Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04339 and MPMX19_04340 are separated by 98 nucleotides MPMX19_04340 and MPMX19_04341 are separated by 294 nucleotides MPMX19_04341 and MPMX19_04342 are separated by 171 nucleotides MPMX19_04342 and MPMX19_04343 overlap by 44 nucleotides
MPMX19_04339: MPMX19_04339 - Bifunctional folate synthesis protein, at 703,496 to 704,029
_04339
MPMX19_04340: MPMX19_04340 - hypothetical protein, at 704,128 to 704,535
_04340
MPMX19_04341: MPMX19_04341 - hypothetical protein, at 704,830 to 704,988
_04341
MPMX19_04342: MPMX19_04342 - Chemotaxis protein CheY, at 705,160 to 705,597
_04342
MPMX19_04343: MPMX19_04343 - Efflux pump membrane transporter BepE, at 705,554 to 708,682
_04343
Position (kb) 704
705 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.073 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.075 kb on + strand at 704.188 kb on + strand, within MPMX19_04340 at 704.562 kb on + strand at 704.563 kb on - strand at 704.563 kb on - strand at 704.566 kb on - strand at 704.574 kb on - strand at 704.574 kb on - strand at 704.583 kb on + strand at 704.583 kb on + strand at 704.584 kb on - strand at 704.584 kb on - strand at 704.584 kb on - strand at 704.584 kb on - strand at 704.585 kb on + strand at 704.585 kb on + strand at 704.586 kb on - strand at 704.616 kb on + strand at 704.616 kb on + strand at 704.617 kb on - strand at 704.617 kb on - strand at 704.617 kb on - strand at 704.633 kb on + strand at 704.633 kb on + strand at 704.633 kb on + strand at 704.633 kb on + strand at 704.634 kb on - strand at 704.634 kb on - strand at 704.644 kb on + strand at 704.681 kb on + strand at 704.681 kb on + strand at 704.681 kb on + strand at 704.681 kb on + strand at 704.682 kb on - strand at 704.682 kb on - strand at 704.683 kb on + strand at 704.683 kb on + strand at 704.683 kb on + strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.738 kb on - strand at 704.738 kb on - strand at 704.816 kb on + strand at 704.816 kb on + strand at 704.816 kb on + strand at 704.816 kb on + strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.817 kb on - strand at 704.892 kb on + strand, within MPMX19_04341 at 704.892 kb on + strand, within MPMX19_04341 at 704.892 kb on + strand, within MPMX19_04341 at 704.893 kb on - strand, within MPMX19_04341 at 704.963 kb on + strand, within MPMX19_04341 at 704.963 kb on + strand, within MPMX19_04341 at 704.963 kb on + strand, within MPMX19_04341 at 704.963 kb on + strand, within MPMX19_04341 at 704.963 kb on + strand, within MPMX19_04341 at 704.964 kb on - strand, within MPMX19_04341 at 704.964 kb on - strand, within MPMX19_04341 at 704.964 kb on - strand, within MPMX19_04341 at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.030 kb on + strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.031 kb on - strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.055 kb on + strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.056 kb on - strand at 705.067 kb on - strand at 705.169 kb on + strand at 705.169 kb on + strand at 705.169 kb on + strand at 705.169 kb on + strand at 705.170 kb on - strand at 705.170 kb on - strand at 705.170 kb on - strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.660 kb on + strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.661 kb on - strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.666 kb on + strand at 705.667 kb on - strand at 705.667 kb on - strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.771 kb on + strand at 705.772 kb on - strand at 705.772 kb on - strand at 705.772 kb on - strand at 705.772 kb on - strand at 705.772 kb on - strand at 705.772 kb on - strand at 705.963 kb on + strand, within MPMX19_04343 at 705.963 kb on + strand, within MPMX19_04343 at 705.963 kb on + strand, within MPMX19_04343 at 705.963 kb on + strand, within MPMX19_04343 at 705.963 kb on + strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343 at 705.964 kb on - strand, within MPMX19_04343
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 704,073 + -1.6 704,073 + +0.2 704,073 + +0.0 704,073 + -0.2 704,073 + -0.8 704,073 + -1.6 704,073 + -0.0 704,073 + -0.7 704,073 + +0.8 704,073 + +0.5 704,073 + +0.3 704,073 + -1.0 704,073 + +0.9 704,073 + +0.8 704,075 + -1.1 704,075 + +0.2 704,075 + +0.0 704,075 + +0.3 704,075 + +1.2 704,075 + -1.8 704,075 + +0.2 704,075 + -3.2 704,075 + -0.5 704,075 + -1.6 704,075 + +0.8 704,075 + -0.7 704,075 + -0.1 704,075 + -1.1 704,075 + -0.2 704,075 + +0.4 704,075 + -1.8 704,188 + MPMX19_04340 0.15 -1.2 704,562 + +0.2 704,563 - -1.6 704,563 - +0.3 704,566 - -0.5 704,574 - -1.3 704,574 - +0.4 704,583 + -0.8 704,583 + -0.4 704,584 - +0.2 704,584 - -3.0 704,584 - -0.1 704,584 - +0.5 704,585 + +0.2 704,585 + -1.5 704,586 - +0.9 704,616 + -1.6 704,616 + -0.8 704,617 - -0.4 704,617 - -0.6 704,617 - -0.5 704,633 + -1.2 704,633 + -0.6 704,633 + -1.1 704,633 + +0.5 704,634 - -1.8 704,634 - -1.1 704,644 + -0.2 704,681 + -0.3 704,681 + -1.2 704,681 + +0.3 704,681 + -0.2 704,682 - +0.4 704,682 - +0.2 704,683 + +1.2 704,683 + -0.5 704,683 + -0.6 704,737 + -0.6 704,737 + +0.2 704,737 + -1.9 704,737 + +0.3 704,737 + -0.4 704,737 + -0.7 704,738 - -0.6 704,738 - -0.6 704,816 + -0.6 704,816 + +0.4 704,816 + +0.6 704,816 + +0.0 704,817 - -0.1 704,817 - -0.8 704,817 - +0.1 704,817 - +0.5 704,817 - +1.1 704,817 - +0.0 704,817 - -1.6 704,817 - -0.5 704,817 - +0.2 704,817 - +0.8 704,817 - -0.3 704,892 + MPMX19_04341 0.39 -0.7 704,892 + MPMX19_04341 0.39 -1.2 704,892 + MPMX19_04341 0.39 -0.1 704,893 - MPMX19_04341 0.40 +0.1 704,963 + MPMX19_04341 0.84 -0.3 704,963 + MPMX19_04341 0.84 -1.2 704,963 + MPMX19_04341 0.84 -2.4 704,963 + MPMX19_04341 0.84 -0.6 704,963 + MPMX19_04341 0.84 +0.8 704,964 - MPMX19_04341 0.84 -0.1 704,964 - MPMX19_04341 0.84 -0.8 704,964 - MPMX19_04341 0.84 -0.3 705,030 + -1.4 705,030 + +0.3 705,030 + +1.0 705,030 + -0.1 705,030 + +0.4 705,030 + -0.7 705,030 + -0.6 705,030 + +0.4 705,030 + -0.9 705,030 + -0.4 705,030 + +0.6 705,030 + +0.5 705,031 - +1.5 705,031 - -0.0 705,031 - -1.6 705,031 - +0.8 705,031 - +0.1 705,031 - +0.2 705,031 - +0.5 705,031 - -0.8 705,031 - -0.1 705,031 - +1.2 705,031 - -0.6 705,031 - -0.2 705,031 - -0.0 705,055 + -0.4 705,055 + -0.1 705,055 + -1.6 705,055 + -1.5 705,055 + +0.4 705,055 + -0.8 705,055 + -0.2 705,055 + -1.1 705,055 + -1.7 705,055 + -0.2 705,055 + +1.0 705,055 + +0.2 705,055 + -1.8 705,055 + -1.2 705,055 + +0.0 705,055 + -1.1 705,056 - -0.9 705,056 - -0.7 705,056 - +0.0 705,056 - -0.6 705,056 - -1.1 705,056 - -1.1 705,056 - -0.8 705,056 - -0.2 705,056 - +0.1 705,056 - +0.2 705,056 - -1.4 705,056 - +0.4 705,056 - -0.7 705,056 - +1.2 705,056 - +0.5 705,056 - -1.8 705,056 - -0.6 705,067 - -0.2 705,169 + -0.6 705,169 + -1.1 705,169 + +1.8 705,169 + -0.1 705,170 - -1.3 705,170 - +0.8 705,170 - -1.0 705,660 + -0.2 705,660 + -0.8 705,660 + -0.4 705,660 + +0.3 705,660 + -0.5 705,660 + -1.2 705,660 + -0.2 705,660 + +0.3 705,660 + +0.2 705,660 + +1.2 705,660 + -1.0 705,660 + -0.6 705,660 + -1.2 705,660 + -0.2 705,660 + -2.3 705,660 + +0.2 705,660 + -1.6 705,660 + +0.9 705,660 + +0.6 705,660 + -1.9 705,661 - -1.8 705,661 - +0.1 705,661 - +1.0 705,661 - -1.2 705,661 - -1.9 705,661 - -0.1 705,661 - -0.2 705,661 - -0.2 705,661 - -1.4 705,661 - +1.5 705,661 - -0.2 705,661 - -0.8 705,661 - -1.6 705,661 - -1.9 705,661 - +0.8 705,661 - -2.8 705,661 - -0.8 705,661 - +1.8 705,661 - +1.0 705,661 - -0.4 705,661 - +0.7 705,661 - -2.1 705,661 - +1.3 705,661 - -0.9 705,666 + -1.4 705,666 + -2.6 705,666 + -0.3 705,666 + +0.3 705,666 + -0.6 705,666 + +0.8 705,666 + -1.2 705,667 - -1.0 705,667 - -1.2 705,771 + +0.6 705,771 + -0.1 705,771 + +0.6 705,771 + +0.2 705,771 + +0.8 705,771 + -0.4 705,771 + -0.1 705,771 + +0.6 705,771 + -0.3 705,771 + +2.1 705,771 + -1.0 705,771 + +1.8 705,772 - +0.9 705,772 - -0.8 705,772 - -0.1 705,772 - +0.3 705,772 - -0.4 705,772 - +0.3 705,963 + MPMX19_04343 0.13 -0.9 705,963 + MPMX19_04343 0.13 -0.2 705,963 + MPMX19_04343 0.13 -2.1 705,963 + MPMX19_04343 0.13 +0.1 705,963 + MPMX19_04343 0.13 +0.8 705,964 - MPMX19_04343 0.13 -0.9 705,964 - MPMX19_04343 0.13 -2.8 705,964 - MPMX19_04343 0.13 +1.2 705,964 - MPMX19_04343 0.13 -0.5 705,964 - MPMX19_04343 0.13 -1.4 705,964 - MPMX19_04343 0.13 -1.2 705,964 - MPMX19_04343 0.13 +0.4 705,964 - MPMX19_04343 0.13 -0.6
Or see this region's nucleotide sequence