Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03534 and MPMX19_03535 overlap by 4 nucleotides MPMX19_03535 and MPMX19_03536 overlap by 8 nucleotides MPMX19_03536 and MPMX19_03537 overlap by 1 nucleotides MPMX19_03537 and MPMX19_03538 are separated by 69 nucleotides
MPMX19_03534: MPMX19_03534 - High-affinity branched-chain amino acid transport system permease protein LivH, at 953,595 to 954,527
_03534
MPMX19_03535: MPMX19_03535 - hypothetical protein, at 954,524 to 955,513
_03535
MPMX19_03536: MPMX19_03536 - Lipopolysaccharide export system ATP-binding protein LptB, at 955,506 to 956,261
_03536
MPMX19_03537: MPMX19_03537 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 956,261 to 956,962
_03537
MPMX19_03538: MPMX19_03538 - HTH-type transcriptional repressor NagR, at 957,032 to 957,781
_03538
Position (kb) 955
956
957 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 954.746 kb on + strand, within MPMX19_03535 at 954.747 kb on - strand, within MPMX19_03535 at 954.827 kb on + strand, within MPMX19_03535 at 954.827 kb on + strand, within MPMX19_03535 at 954.827 kb on + strand, within MPMX19_03535 at 954.828 kb on - strand, within MPMX19_03535 at 954.957 kb on - strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 955.151 kb on + strand, within MPMX19_03535 at 955.158 kb on - strand, within MPMX19_03535 at 955.172 kb on + strand, within MPMX19_03535 at 955.172 kb on + strand, within MPMX19_03535 at 955.173 kb on - strand, within MPMX19_03535 at 955.379 kb on + strand, within MPMX19_03535 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.235 kb on + strand at 956.235 kb on + strand at 956.235 kb on + strand at 956.235 kb on + strand at 956.236 kb on - strand at 956.291 kb on + strand at 956.292 kb on - strand at 956.400 kb on + strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.949 kb on - strand at 956.949 kb on - strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.255 kb on + strand, within MPMX19_03538 at 957.255 kb on + strand, within MPMX19_03538 at 957.256 kb on - strand, within MPMX19_03538 at 957.256 kb on - strand, within MPMX19_03538 at 957.256 kb on - strand, within MPMX19_03538
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 954,746 + MPMX19_03535 0.22 +0.1 954,747 - MPMX19_03535 0.23 -1.5 954,827 + MPMX19_03535 0.31 -2.2 954,827 + MPMX19_03535 0.31 +1.6 954,827 + MPMX19_03535 0.31 +0.7 954,828 - MPMX19_03535 0.31 -0.7 954,957 - MPMX19_03535 0.44 -1.0 954,965 + MPMX19_03535 0.45 +0.7 954,965 + MPMX19_03535 0.45 +0.6 954,965 + MPMX19_03535 0.45 +0.8 954,965 + MPMX19_03535 0.45 -0.2 954,965 + MPMX19_03535 0.45 +0.1 954,966 - MPMX19_03535 0.45 -2.0 954,966 - MPMX19_03535 0.45 +1.0 954,966 - MPMX19_03535 0.45 -1.0 954,966 - MPMX19_03535 0.45 -2.5 954,966 - MPMX19_03535 0.45 -0.3 954,966 - MPMX19_03535 0.45 -1.0 954,966 - MPMX19_03535 0.45 -0.4 954,966 - MPMX19_03535 0.45 -0.5 954,966 - MPMX19_03535 0.45 -1.1 955,151 + MPMX19_03535 0.63 -0.9 955,158 - MPMX19_03535 0.64 -1.7 955,172 + MPMX19_03535 0.65 +0.0 955,172 + MPMX19_03535 0.65 -0.1 955,173 - MPMX19_03535 0.66 +0.4 955,379 + MPMX19_03535 0.86 +0.6 955,912 + MPMX19_03536 0.54 +0.9 955,912 + MPMX19_03536 0.54 -0.7 955,912 + MPMX19_03536 0.54 +0.0 955,912 + MPMX19_03536 0.54 +0.2 955,912 + MPMX19_03536 0.54 -0.7 955,913 - MPMX19_03536 0.54 +1.1 955,913 - MPMX19_03536 0.54 -1.4 955,913 - MPMX19_03536 0.54 -1.2 956,169 + MPMX19_03536 0.88 -0.7 956,169 + MPMX19_03536 0.88 +0.5 956,169 + MPMX19_03536 0.88 +1.2 956,169 + MPMX19_03536 0.88 -1.9 956,170 - MPMX19_03536 0.88 +0.6 956,170 - MPMX19_03536 0.88 -0.2 956,170 - MPMX19_03536 0.88 +0.4 956,235 + -0.7 956,235 + +0.8 956,235 + -1.1 956,235 + -1.3 956,236 - -0.2 956,291 + +0.5 956,292 - -0.7 956,400 + MPMX19_03537 0.20 -0.7 956,401 - MPMX19_03537 0.20 +1.2 956,401 - MPMX19_03537 0.20 -0.2 956,401 - MPMX19_03537 0.20 -1.1 956,948 + +1.2 956,948 + -0.1 956,948 + +1.0 956,948 + -0.1 956,948 + +1.0 956,948 + +1.3 956,948 + -0.4 956,948 + -0.1 956,949 - -0.8 956,949 - -0.4 957,051 + -1.2 957,051 + +1.4 957,051 + +0.4 957,051 + -0.3 957,051 + -0.2 957,051 + -0.6 957,051 + -1.3 957,051 + -1.0 957,051 + -1.9 957,051 + +0.2 957,051 + -2.2 957,051 + -1.0 957,051 + -0.8 957,052 - -0.6 957,052 - -0.7 957,052 - +0.0 957,052 - -2.5 957,052 - -0.3 957,052 - -1.2 957,052 - -2.6 957,052 - -0.9 957,052 - -1.0 957,052 - -1.1 957,052 - -0.6 957,052 - -1.6 957,052 - +0.6 957,052 - -0.3 957,052 - +2.9 957,052 - -0.7 957,052 - +1.0 957,255 + MPMX19_03538 0.30 -2.6 957,255 + MPMX19_03538 0.30 -0.5 957,256 - MPMX19_03538 0.30 -0.6 957,256 - MPMX19_03538 0.30 -0.4 957,256 - MPMX19_03538 0.30 -0.7
Or see this region's nucleotide sequence