Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03345

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03344 and MPMX19_03345 are separated by 123 nucleotidesMPMX19_03345 and MPMX19_03346 are separated by 144 nucleotidesMPMX19_03346 and MPMX19_03347 overlap by 16 nucleotides MPMX19_03344: MPMX19_03344 - 3-[(3aS,4S,7aS)-7a-methyl-1, 5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase, at 701,406 to 703,115 _03344 MPMX19_03345: MPMX19_03345 - Phenylacetaldehyde dehydrogenase, at 703,239 to 704,654 _03345 MPMX19_03346: MPMX19_03346 - hypothetical protein, at 704,799 to 705,449 _03346 MPMX19_03347: MPMX19_03347 - Putative multidrug export ATP-binding/permease protein, at 705,434 to 707,137 _03347 Position (kb) 703 704 705Strain fitness (log2 ratio) -2 -1 0 1 2 3at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.340 kb on + strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.341 kb on - strand, within MPMX19_03344at 702.703 kb on + strand, within MPMX19_03344at 702.703 kb on + strand, within MPMX19_03344at 702.703 kb on + strand, within MPMX19_03344at 702.703 kb on + strand, within MPMX19_03344at 702.703 kb on + strand, within MPMX19_03344at 702.703 kb on + strand, within MPMX19_03344at 702.704 kb on - strand, within MPMX19_03344at 702.704 kb on - strand, within MPMX19_03344at 702.766 kb on + strand, within MPMX19_03344at 702.766 kb on + strand, within MPMX19_03344at 702.766 kb on + strand, within MPMX19_03344at 702.766 kb on + strand, within MPMX19_03344at 702.766 kb on + strand, within MPMX19_03344at 702.766 kb on + strand, within MPMX19_03344at 702.766 kb on + strand, within MPMX19_03344at 702.766 kb on + strand, within MPMX19_03344at 702.766 kb on + strand, within MPMX19_03344at 702.767 kb on - strand, within MPMX19_03344at 702.767 kb on - strand, within MPMX19_03344at 702.767 kb on - strand, within MPMX19_03344at 702.955 kb on + strandat 702.956 kb on - strandat 702.956 kb on - strandat 702.956 kb on - strandat 702.956 kb on - strandat 702.956 kb on - strandat 702.956 kb on - strandat 702.956 kb on - strandat 702.956 kb on - strandat 702.956 kb on - strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.081 kb on + strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.082 kb on - strandat 703.110 kb on - strandat 703.110 kb on - strandat 703.141 kb on + strandat 703.141 kb on + strandat 703.142 kb on - strandat 703.142 kb on - strandat 703.142 kb on - strandat 703.142 kb on - strandat 703.197 kb on + strandat 703.240 kb on + strandat 703.240 kb on + strandat 703.420 kb on + strand, within MPMX19_03345at 703.421 kb on - strand, within MPMX19_03345at 703.465 kb on + strand, within MPMX19_03345at 703.465 kb on + strand, within MPMX19_03345at 703.687 kb on + strand, within MPMX19_03345at 703.687 kb on + strand, within MPMX19_03345at 703.688 kb on - strand, within MPMX19_03345at 703.688 kb on - strand, within MPMX19_03345at 703.688 kb on - strand, within MPMX19_03345at 703.688 kb on - strand, within MPMX19_03345at 703.688 kb on - strand, within MPMX19_03345at 703.792 kb on + strand, within MPMX19_03345at 703.792 kb on + strand, within MPMX19_03345at 703.792 kb on + strand, within MPMX19_03345at 703.793 kb on - strand, within MPMX19_03345at 703.793 kb on - strand, within MPMX19_03345at 703.793 kb on - strand, within MPMX19_03345at 703.810 kb on + strand, within MPMX19_03345at 703.811 kb on - strand, within MPMX19_03345at 703.811 kb on - strand, within MPMX19_03345at 703.811 kb on - strand, within MPMX19_03345at 703.811 kb on - strand, within MPMX19_03345at 703.811 kb on - strand, within MPMX19_03345at 704.348 kb on + strand, within MPMX19_03345at 704.348 kb on + strand, within MPMX19_03345at 704.348 kb on + strand, within MPMX19_03345at 704.350 kb on + strand, within MPMX19_03345at 704.350 kb on + strand, within MPMX19_03345at 704.351 kb on - strand, within MPMX19_03345at 704.351 kb on - strand, within MPMX19_03345at 704.351 kb on - strand, within MPMX19_03345at 704.351 kb on - strand, within MPMX19_03345at 704.351 kb on - strand, within MPMX19_03345at 704.351 kb on - strand, within MPMX19_03345at 704.351 kb on - strand, within MPMX19_03345at 704.351 kb on - strand, within MPMX19_03345at 704.644 kb on + strandat 704.644 kb on + strandat 704.645 kb on - strandat 704.645 kb on - strandat 704.645 kb on - strandat 704.711 kb on + strandat 704.711 kb on + strandat 704.711 kb on + strandat 704.711 kb on + strandat 704.711 kb on + strandat 704.711 kb on + strandat 704.712 kb on - strandat 704.712 kb on - strandat 704.712 kb on - strandat 704.712 kb on - strandat 704.712 kb on - strandat 704.712 kb on - strandat 705.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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702,340 + MPMX19_03344 0.55 -1.3
702,340 + MPMX19_03344 0.55 -1.0
702,340 + MPMX19_03344 0.55 +0.0
702,340 + MPMX19_03344 0.55 -0.4
702,340 + MPMX19_03344 0.55 +0.4
702,340 + MPMX19_03344 0.55 -0.7
702,340 + MPMX19_03344 0.55 +0.3
702,340 + MPMX19_03344 0.55 -1.0
702,340 + MPMX19_03344 0.55 -0.3
702,340 + MPMX19_03344 0.55 +0.7
702,340 + MPMX19_03344 0.55 -0.5
702,341 - MPMX19_03344 0.55 -1.2
702,341 - MPMX19_03344 0.55 -0.1
702,341 - MPMX19_03344 0.55 +1.3
702,341 - MPMX19_03344 0.55 -0.9
702,341 - MPMX19_03344 0.55 -0.2
702,341 - MPMX19_03344 0.55 -0.7
702,341 - MPMX19_03344 0.55 +1.3
702,341 - MPMX19_03344 0.55 +0.8
702,341 - MPMX19_03344 0.55 -0.5
702,341 - MPMX19_03344 0.55 +1.5
702,341 - MPMX19_03344 0.55 -1.6
702,341 - MPMX19_03344 0.55 -0.5
702,341 - MPMX19_03344 0.55 -0.4
702,341 - MPMX19_03344 0.55 -0.3
702,703 + MPMX19_03344 0.76 +0.4
702,703 + MPMX19_03344 0.76 -1.1
702,703 + MPMX19_03344 0.76 +0.0
702,703 + MPMX19_03344 0.76 -0.4
702,703 + MPMX19_03344 0.76 -0.5
702,703 + MPMX19_03344 0.76 -0.9
702,704 - MPMX19_03344 0.76 +0.4
702,704 - MPMX19_03344 0.76 -0.3
702,766 + MPMX19_03344 0.80 -1.5
702,766 + MPMX19_03344 0.80 -1.4
702,766 + MPMX19_03344 0.80 -0.7
702,766 + MPMX19_03344 0.80 +0.8
702,766 + MPMX19_03344 0.80 -2.1
702,766 + MPMX19_03344 0.80 -1.1
702,766 + MPMX19_03344 0.80 -0.3
702,766 + MPMX19_03344 0.80 -0.5
702,766 + MPMX19_03344 0.80 -0.2
702,767 - MPMX19_03344 0.80 +0.2
702,767 - MPMX19_03344 0.80 -2.0
702,767 - MPMX19_03344 0.80 +0.9
702,955 + -0.7
702,956 - +1.6
702,956 - +0.4
702,956 - -0.3
702,956 - -0.4
702,956 - -0.2
702,956 - +0.6
702,956 - -1.1
702,956 - -1.9
702,956 - -0.9
703,081 + -1.1
703,081 + -0.1
703,081 + -0.3
703,081 + -0.2
703,081 + -2.1
703,081 + -0.4
703,081 + +1.9
703,081 + -1.6
703,081 + -0.6
703,081 + +0.6
703,081 + +1.3
703,081 + -0.4
703,081 + +0.3
703,081 + -0.3
703,081 + +0.1
703,081 + -1.6
703,081 + -1.0
703,081 + +0.0
703,082 - -0.5
703,082 - -1.3
703,082 - +0.0
703,082 - -0.4
703,082 - -0.5
703,082 - +0.3
703,082 - -0.9
703,082 - -0.7
703,082 - -0.6
703,082 - -1.3
703,082 - -0.6
703,082 - -0.9
703,082 - -0.8
703,082 - -1.4
703,110 - +2.9
703,110 - -0.6
703,141 + -1.0
703,141 + +1.2
703,142 - +0.4
703,142 - +1.0
703,142 - +0.4
703,142 - -0.7
703,197 + -1.7
703,240 + -0.4
703,240 + +0.2
703,420 + MPMX19_03345 0.13 -0.8
703,421 - MPMX19_03345 0.13 -1.8
703,465 + MPMX19_03345 0.16 -0.6
703,465 + MPMX19_03345 0.16 -0.1
703,687 + MPMX19_03345 0.32 +0.0
703,687 + MPMX19_03345 0.32 -0.6
703,688 - MPMX19_03345 0.32 -1.1
703,688 - MPMX19_03345 0.32 -1.0
703,688 - MPMX19_03345 0.32 -0.3
703,688 - MPMX19_03345 0.32 -1.3
703,688 - MPMX19_03345 0.32 -0.2
703,792 + MPMX19_03345 0.39 -0.2
703,792 + MPMX19_03345 0.39 +0.1
703,792 + MPMX19_03345 0.39 -0.1
703,793 - MPMX19_03345 0.39 +0.6
703,793 - MPMX19_03345 0.39 +0.0
703,793 - MPMX19_03345 0.39 -0.3
703,810 + MPMX19_03345 0.40 -0.5
703,811 - MPMX19_03345 0.40 -1.6
703,811 - MPMX19_03345 0.40 -0.1
703,811 - MPMX19_03345 0.40 +0.0
703,811 - MPMX19_03345 0.40 +0.9
703,811 - MPMX19_03345 0.40 -1.4
704,348 + MPMX19_03345 0.78 -0.8
704,348 + MPMX19_03345 0.78 +0.1
704,348 + MPMX19_03345 0.78 -0.9
704,350 + MPMX19_03345 0.78 -0.4
704,350 + MPMX19_03345 0.78 -2.1
704,351 - MPMX19_03345 0.79 -0.4
704,351 - MPMX19_03345 0.79 -0.1
704,351 - MPMX19_03345 0.79 -0.3
704,351 - MPMX19_03345 0.79 +1.3
704,351 - MPMX19_03345 0.79 -0.9
704,351 - MPMX19_03345 0.79 +0.4
704,351 - MPMX19_03345 0.79 +0.0
704,351 - MPMX19_03345 0.79 -1.1
704,644 + -0.2
704,644 + -0.7
704,645 - -0.6
704,645 - -1.1
704,645 - -0.1
704,711 + +0.5
704,711 + -0.1
704,711 + +0.2
704,711 + -0.5
704,711 + +0.4
704,711 + +1.8
704,712 - +0.6
704,712 - -1.3
704,712 - -1.2
704,712 - +0.8
704,712 - +0.0
704,712 - +0.3
705,502 - -1.4

Or see this region's nucleotide sequence