Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03063

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03062 and MPMX19_03063 are separated by 15 nucleotidesMPMX19_03063 and MPMX19_03064 overlap by 4 nucleotidesMPMX19_03064 and MPMX19_03065 are separated by 229 nucleotides MPMX19_03062: MPMX19_03062 - Periplasmic nitrate reductase, at 326,069 to 328,561 _03062 MPMX19_03063: MPMX19_03063 - hypothetical protein, at 328,577 to 329,062 _03063 MPMX19_03064: MPMX19_03064 - Cytochrome c-type protein NapC, at 329,059 to 329,730 _03064 MPMX19_03065: MPMX19_03065 - Nucleoid occlusion protein, at 329,960 to 330,847 _03065 Position (kb) 328 329 330Strain fitness (log2 ratio) -2 -1 0 1at 327.606 kb on - strand, within MPMX19_03062at 327.772 kb on + strand, within MPMX19_03062at 327.773 kb on - strand, within MPMX19_03062at 327.773 kb on - strand, within MPMX19_03062at 327.830 kb on + strand, within MPMX19_03062at 327.861 kb on - strand, within MPMX19_03062at 327.861 kb on - strand, within MPMX19_03062at 327.911 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.945 kb on - strand, within MPMX19_03062at 327.945 kb on - strand, within MPMX19_03062at 327.945 kb on - strand, within MPMX19_03062at 327.971 kb on + strand, within MPMX19_03062at 327.971 kb on + strand, within MPMX19_03062at 327.971 kb on + strand, within MPMX19_03062at 327.971 kb on + strand, within MPMX19_03062at 327.972 kb on - strand, within MPMX19_03062at 327.972 kb on - strand, within MPMX19_03062at 327.972 kb on - strand, within MPMX19_03062at 327.972 kb on - strand, within MPMX19_03062at 328.023 kb on - strand, within MPMX19_03062at 328.023 kb on - strand, within MPMX19_03062at 328.023 kb on - strand, within MPMX19_03062at 328.133 kb on + strand, within MPMX19_03062at 328.133 kb on + strand, within MPMX19_03062at 328.133 kb on + strand, within MPMX19_03062at 328.133 kb on + strand, within MPMX19_03062at 328.134 kb on - strand, within MPMX19_03062at 328.134 kb on - strand, within MPMX19_03062at 328.134 kb on - strand, within MPMX19_03062at 328.176 kb on - strand, within MPMX19_03062at 328.176 kb on - strand, within MPMX19_03062at 328.176 kb on - strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.287 kb on - strand, within MPMX19_03062at 328.287 kb on - strand, within MPMX19_03062at 328.287 kb on - strand, within MPMX19_03062at 328.287 kb on - strand, within MPMX19_03062at 328.648 kb on + strand, within MPMX19_03063at 328.649 kb on - strand, within MPMX19_03063at 328.649 kb on - strand, within MPMX19_03063at 328.649 kb on - strand, within MPMX19_03063at 328.649 kb on - strand, within MPMX19_03063at 328.763 kb on + strand, within MPMX19_03063at 328.764 kb on - strand, within MPMX19_03063at 328.764 kb on - strand, within MPMX19_03063at 328.805 kb on + strand, within MPMX19_03063at 328.805 kb on + strand, within MPMX19_03063at 328.898 kb on + strand, within MPMX19_03063at 329.258 kb on - strand, within MPMX19_03064at 329.258 kb on - strand, within MPMX19_03064at 329.258 kb on - strand, within MPMX19_03064at 329.569 kb on + strand, within MPMX19_03064at 329.569 kb on + strand, within MPMX19_03064at 329.569 kb on + strand, within MPMX19_03064at 329.569 kb on + strand, within MPMX19_03064at 329.570 kb on - strand, within MPMX19_03064at 329.570 kb on - strand, within MPMX19_03064at 329.570 kb on - strand, within MPMX19_03064at 329.570 kb on - strand, within MPMX19_03064at 329.570 kb on - strand, within MPMX19_03064at 329.570 kb on - strand, within MPMX19_03064at 329.570 kb on - strand, within MPMX19_03064at 329.635 kb on - strand, within MPMX19_03064at 329.635 kb on - strand, within MPMX19_03064at 329.961 kb on + strandat 329.961 kb on + strandat 329.961 kb on + strandat 329.962 kb on - strandat 329.962 kb on - strandat 329.962 kb on - strandat 329.962 kb on - strandat 329.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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327,606 - MPMX19_03062 0.62 -0.5
327,772 + MPMX19_03062 0.68 +1.1
327,773 - MPMX19_03062 0.68 -0.0
327,773 - MPMX19_03062 0.68 -0.6
327,830 + MPMX19_03062 0.71 +1.7
327,861 - MPMX19_03062 0.72 +0.2
327,861 - MPMX19_03062 0.72 +1.1
327,911 + MPMX19_03062 0.74 -0.5
327,944 + MPMX19_03062 0.75 -0.1
327,944 + MPMX19_03062 0.75 +1.3
327,944 + MPMX19_03062 0.75 -0.2
327,944 + MPMX19_03062 0.75 -0.6
327,944 + MPMX19_03062 0.75 +1.0
327,944 + MPMX19_03062 0.75 +0.7
327,944 + MPMX19_03062 0.75 -1.5
327,945 - MPMX19_03062 0.75 +0.9
327,945 - MPMX19_03062 0.75 -1.1
327,945 - MPMX19_03062 0.75 -0.1
327,971 + MPMX19_03062 0.76 +0.2
327,971 + MPMX19_03062 0.76 -0.9
327,971 + MPMX19_03062 0.76 -2.3
327,971 + MPMX19_03062 0.76 -0.5
327,972 - MPMX19_03062 0.76 -0.1
327,972 - MPMX19_03062 0.76 -0.4
327,972 - MPMX19_03062 0.76 +0.4
327,972 - MPMX19_03062 0.76 -0.7
328,023 - MPMX19_03062 0.78 -1.5
328,023 - MPMX19_03062 0.78 -0.3
328,023 - MPMX19_03062 0.78 -0.5
328,133 + MPMX19_03062 0.83 -0.7
328,133 + MPMX19_03062 0.83 +0.8
328,133 + MPMX19_03062 0.83 -1.5
328,133 + MPMX19_03062 0.83 -0.8
328,134 - MPMX19_03062 0.83 -0.7
328,134 - MPMX19_03062 0.83 -1.0
328,134 - MPMX19_03062 0.83 +0.0
328,176 - MPMX19_03062 0.85 -1.5
328,176 - MPMX19_03062 0.85 +1.1
328,176 - MPMX19_03062 0.85 -0.1
328,286 + MPMX19_03062 0.89 +1.0
328,286 + MPMX19_03062 0.89 +0.4
328,286 + MPMX19_03062 0.89 -1.7
328,286 + MPMX19_03062 0.89 -0.5
328,286 + MPMX19_03062 0.89 -0.3
328,286 + MPMX19_03062 0.89 +0.1
328,286 + MPMX19_03062 0.89 -0.2
328,287 - MPMX19_03062 0.89 -0.7
328,287 - MPMX19_03062 0.89 +0.1
328,287 - MPMX19_03062 0.89 -0.8
328,287 - MPMX19_03062 0.89 +0.7
328,648 + MPMX19_03063 0.15 -1.4
328,649 - MPMX19_03063 0.15 -2.2
328,649 - MPMX19_03063 0.15 +0.2
328,649 - MPMX19_03063 0.15 -0.2
328,649 - MPMX19_03063 0.15 +1.1
328,763 + MPMX19_03063 0.38 -0.1
328,764 - MPMX19_03063 0.38 -1.7
328,764 - MPMX19_03063 0.38 -1.1
328,805 + MPMX19_03063 0.47 +0.1
328,805 + MPMX19_03063 0.47 -0.4
328,898 + MPMX19_03063 0.66 -1.5
329,258 - MPMX19_03064 0.30 +0.0
329,258 - MPMX19_03064 0.30 -1.3
329,258 - MPMX19_03064 0.30 -0.2
329,569 + MPMX19_03064 0.76 +0.4
329,569 + MPMX19_03064 0.76 +0.9
329,569 + MPMX19_03064 0.76 +0.1
329,569 + MPMX19_03064 0.76 -1.3
329,570 - MPMX19_03064 0.76 -2.3
329,570 - MPMX19_03064 0.76 -0.5
329,570 - MPMX19_03064 0.76 +1.1
329,570 - MPMX19_03064 0.76 -0.0
329,570 - MPMX19_03064 0.76 -0.9
329,570 - MPMX19_03064 0.76 +1.0
329,570 - MPMX19_03064 0.76 -0.9
329,635 - MPMX19_03064 0.86 -0.7
329,635 - MPMX19_03064 0.86 -0.5
329,961 + -0.2
329,961 + -0.9
329,961 + -0.3
329,962 - -0.3
329,962 - -1.6
329,962 - -0.2
329,962 - +1.7
329,962 - +0.5

Or see this region's nucleotide sequence