Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00781 and MPMX19_00782 are separated by 166 nucleotides MPMX19_00782 and MPMX19_00783 are separated by 22 nucleotides MPMX19_00783 and MPMX19_00784 are separated by 19 nucleotides
MPMX19_00781: MPMX19_00781 - hypothetical protein, at 800,174 to 801,046
_00781
MPMX19_00782: MPMX19_00782 - 3-dehydroquinate dehydratase, at 801,213 to 801,662
_00782
MPMX19_00783: MPMX19_00783 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 801,685 to 802,134
_00783
MPMX19_00784: MPMX19_00784 - Biotin carboxylase, at 802,154 to 803,494
_00784
Position (kb) 801
802
803 Strain fitness (log2 ratio) -2
-1
0
1
2 at 800.699 kb on + strand, within MPMX19_00781 at 800.699 kb on + strand, within MPMX19_00781 at 800.700 kb on - strand, within MPMX19_00781 at 800.700 kb on - strand, within MPMX19_00781 at 800.700 kb on - strand, within MPMX19_00781 at 800.700 kb on - strand, within MPMX19_00781 at 801.002 kb on + strand at 801.002 kb on + strand at 801.003 kb on - strand at 801.003 kb on - strand at 801.003 kb on - strand at 801.047 kb on + strand at 801.047 kb on + strand at 801.047 kb on + strand at 801.048 kb on - strand at 801.048 kb on - strand at 801.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 800,699 + MPMX19_00781 0.60 -0.2 800,699 + MPMX19_00781 0.60 -0.7 800,700 - MPMX19_00781 0.60 +0.5 800,700 - MPMX19_00781 0.60 -1.2 800,700 - MPMX19_00781 0.60 +0.1 800,700 - MPMX19_00781 0.60 -0.9 801,002 + -0.1 801,002 + -1.1 801,003 - -1.7 801,003 - +0.8 801,003 - -0.4 801,047 + -0.2 801,047 + +0.2 801,047 + +1.8 801,048 - -0.4 801,048 - -1.9 801,174 + -1.6
Or see this region's nucleotide sequence